Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31] 29 sequences; 20,308,363 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq2 174 3e-38 seq5 165 2e-35 seq6 132 1e-25 seq4 87.8 4e-12 >seq2 Length=3052417 Score = 174 bits (192), Expect = 3e-38 Identities = 565/861 (66%), Gaps = 26/861 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 ||||| || || | |||||| |||||||||| ||||||||||||||||||||| ||| Sbjct 506616 TCGAAAAAGTTGGTCTTGCCGGCCAGAGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTG 506675 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | || ||| ||||| | || || || || | | ||||| || |||||||| | Sbjct 506676 GAGTTATACACCTTGGAGTTACCGAGAGCAACTAGCAGACGGTCAGCGACAAACTCGATG 506735 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| | |||||| | | |||||| |||| || || ||| || | || ||| | | Sbjct 506736 TACTGGCACATCAGCTTGGCGTTCATACCAAGCAGACCACAGGGCAGAGCGTCAGTAAGG 506795 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAAT--TGCCTTCACCTGT-GCCAGAGAC 251799 || |||| ||| || |||| | |||| ||||| | | ||| | | | || Sbjct 506796 AACTCCTGCTCGATGCCAACAG---CCTCGACAATGACGTCCTCAACAATCTTCTTTGAG 506852 Query 251800 AGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCG 251859 | |||||| || | ||| | || || | |||| | ||||||||||||||| Sbjct 506853 GGTCGGTTCTCAAGGTGCGAGAAAAGCAGGCAGGCAAAGTCAGTGTGCAGACCCTCGTCT 506912 Query 251860 CGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAG 251919 || ||||| ||||||||| | ||||||||||| | || || ||| |||||||| Sbjct 506913 CGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCAGGCATGAGACCTCGCTTCTTGAGCCAG 506972 Query 251920 AAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGG 251979 ||||| | | || || || ||||| | | |||||||| | | |||| || Sbjct 506973 AAGATGGAGGCGAAAGAGCCGGAGAAGAAGATGCCCTCGACGGCGGCAAAGGCAATGAGT 507032 Query 251980 CGCTCAGCAAA---CGACTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCTTCTTT 252036 ||||| |||| |||| || | || | |||| | ||||| | ||||| ||| Sbjct 507033 CGCTCTCCAAAGGTGGACTCTTCGTCGGAGATCCACTTGAGGGCCCAGTCGGCCTT-TTT 507091 Query 252037 CCAACCGC-GGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCTC 252095 | || |||||| || ||||| || | || || || | ||||| ||||| Sbjct 507092 CTTGATGCAGGGGATGGTCTCGATGGCGTTGAACAGGTAGGTTCGCTCTTTGGGGTCCTT 507151 Query 252096 GATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATCTG 252155 |||| | || | ||| || ||||| |||| || |||||| || | | ||||| Sbjct 507152 GATGTATGTGTCGATCAGCAGCGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTG 507211 Query 252156 GTAAGCATAGAA----TAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTG 252211 | | | ||||| | | | | ||| ||| | | || || ||| || | Sbjct 507212 GAAGCCGTAGAAGCACTTGGC-CTCGG--GGGCCTG-CACCTCGCCGGAGAATCGCTCAA 507267 Query 252212 CAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGA 252271 | | |||||| | || || || ||| | | |||||||| | |||| | ||||| Sbjct 507268 CCAGGTTCTCGTTAACGATACCGTCGGAGGCAGCAAAGAATGCGAGAACGTGGGAGATGA 507327 Query 252272 AGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTC--AGAGG 252329 || |||||||||| |||||| ||| |||||| | ||||||| ||| ||| Sbjct 507328 AGAACCGCTCATCGTTGTTGAGTCTGTTCTCCCAGTCACCCATGTCCT--TTCCAAGATC 507385 Query 252330 AACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT-TGCGAACACATCAG 252388 || || || | |||||||| | || | | |||||||||||||| ||| | | || Sbjct 507386 AATCTCCTCAGCTGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATCTGC-CAGATTTCGT 507444 Query 252389 GGTACTTGATTGGGAA-AGCA 252408 |||||| ||| ||||| |||| Sbjct 507445 GGTACTGGATGGGGAAGAGCA 507465 >seq5 Length=4047401 Score = 165 bits (182), Expect = 2e-35 Identities = 418/624 (67%), Gaps = 29/624 (5%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 || |||||||||||| ||||||| ||||| || || || |||| ||||||||||| ||| Sbjct 1593020 GGCGAGGATCTGTGTAACTGTGAGTTCTCTCTGGCTTACGGTGCTAAGATTCTGCTGAAC 1593079 Query 279405 TCTACCCGCCT-CAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGC 279463 |||| || | || ||||||| ||| || || |||||| ||||| || || || Sbjct 1593080 CGAACCCAGCTGCGAC-TCAAGCGAGGCCGACGATACGGTCTCTGTGGTCCTAACGGTGC 1593138 Query 279464 GGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGC 279523 |||||| ||| || ||||| |||||||| ||||||||| | || || ||||| || | Sbjct 1593139 TGGTAAGTCCACCCTGATGCGAGCCATTGCCAACGGTCAGGTCGAGGG-TTTCCCCACCC 1593197 Query 279524 ATCTGAGGTAAGGA-CAGTGTATGTAGAGCACGACATCGACTCCTCTCTCTCGGATAGCA 279582 | | || || | || | || || |||||||| ||| | | | | || | || Sbjct 1593198 AGGAGGAGTGTCGAACTGTCTTCGTCGACCACGACATTGACGGTACCCACGCCGACACCA 1593257 Query 279583 CTGTGTTCGACTTCCTAACGTCTGACAATCAG--GTTATGGAAATCAGCTCTCCTGAGGA 279640 || |||||| ||||| || | | | | | | ||| | || ||||| Sbjct 1593258 ACGTTGTCGACT-----ACGTCCGAAAGACCGCCGGTGAGTCCATCGGTACTGAGGAGGA 1593312 Query 279641 AATCATCCAGAAACTGGAGGCCAATGGTTT---TGATGAAAGAATGCGTAATCTGCCAGT 279697 || || | ||| | | || ||| || | | || | |||| | Sbjct 1593313 GGTCCGAAAGCAGCTGCTTGACTTCCTGTTCACTGACGAGATGACCCGAA---TGCCCAT 1593369 Query 279698 AGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCT---CACTCGCGCCATTCTACT 279754 |||||||| ||||| ||||||||||||||||| || |||| || | | | | Sbjct 1593370 CACCTCTCTGTCTGGTGGATGGAAGATGAAGCTGGCTCTTGCCACTGCCGTCCTCCGAAA 1593429 Query 279755 GCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGC 279814 | |||||| |||| |||||||||||||| |||||||| |||| ||| |||||| || Sbjct 1593430 G---GCCGATATCCTGCTGCTTGATGAGCCTACCAACCATCTGGATACCGTCAACGTTGC 1593486 Query 279815 CTGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGA 279874 ||||| || |||||| | || ||| | | | | ||| |||| ||||| ||||| Sbjct 1593487 TTGGCTGGTCAACTACCTTAACA-CCTGTGG--TATCACCTCCATCATCGTCTCCCACGA 1593543 Query 279875 CTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCT 279934 |||||| ||||| ||| ||| || |||||||||||| |||| | | ||||| Sbjct 1593544 CTCTGGTTTCCTCGATAACGTCTGTGAGTACATCATTCACTACGAGCGA---TTCAAGCT 1593600 Query 279935 CTCCAAGCACATCGGCAACCTGTC 279958 | ||| ||| || |||||||| Sbjct 1593601 CCGAAAGTACAAGGGTAACCTGTC 1593624 Score = 95.1 bits (104), Expect = 2e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 280677 CTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAG 280736 || ||||| || |||||| || |||||||||| || || ||||| ||||| || ||| Sbjct 1594391 CTTGGTCTCGAGCCCGAGCTTGTCTCTCACTCTCGAATCCGAGGTCTGTCTGGTGGTCAG 1594450 Query 280737 AAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAACACCCTCACGTGATCGTTCTCGAC 280796 |||||||| ||||| | | || | ||||| | || || | ||||| || || Sbjct 1594451 AAGGTCAAGCTTGTGCTTGCCGCCTGTACCTGGCAGCGACCCCATCTTATCGTCCTTGAT 1594510 Query 280797 GAGCCTACCAACTATCTGGACCGCGAGAGCCTGGGCGCTCTG 280838 |||||||||||||||||||| || || || || |||||| Sbjct 1594511 GAGCCTACCAACTATCTGGATCGAGACTCTCTTGGAGCTCTG 1594552 >seq6 Length=3777980 Score = 132 bits (146), Expect = 1e-25 Identities = 495/764 (65%), Gaps = 23/764 (3%) Strand=Plus/Minus Query 293020 TAATACACAAGTGTTTTAAGACCCTTCTTCCATGCGTAGAACAGCATAGATGTCATAGAC 293079 || |||| | ||| || |||||||||||||| ||||||| |||| || || | | Sbjct 3776830 TAGTACATACCTGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGCATGGAGGTGAG---C 3776774 Query 293080 TTCAGTGTGGGAGTGGCCAGGAA---AAGGTTCATGCTCTGCGTCTGATCGACAAAGGCA 293136 || ||| || | || || || ||| | | ||| | ||| || | |||| Sbjct 3776773 TTGCCCATGGTAGGGTCCTTGATGTGAATGTTGAGGGACTGAGACTGGTCAATGAAGGGG 3776714 Query 293137 CCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGAGATCTCCCACGATGTCTTGTAC 293196 || ||||| || | ||||| | | |||| ||| ||||||||| ||||||||| Sbjct 3776713 GATCGGTCAGCGGCCATCTCAATGATTCGCTTCTGAGAAATCTCCCACACGGTCTTGTAC 3776654 Query 293197 ACTGCCTTGACATCAGGATGAATGCCAATAACCTTCTGGATAGACCCTCCGTTG---GCA 293253 | |||||| || | ||||| | ||||| | || ||||||| ||| Sbjct 3776653 AGGTCCTTGATTTCCTGGGGAATGTTGGGGATGTTCTGCACGGA---TCCGTTGTCAGCA 3776597 Query 293254 ATAATCTGGTTCTTCATTGTCTCGGACCA-AGTCCCACGAGCAATGAGCTCGCGGACAAG 293312 | ||| |||||||||| |||||| ||| || || || ||| || || || || Sbjct 3776596 ACAATTCGGTTCTTCATGGTCTCGTTCCACAGGCCAACCT-CAACCAGGTCCTTGAGCAG 3776538 Query 293313 GTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGACGGCTGTAAATGTTCGAAGT 293372 | | |||||||| |||| |||||||| ||| || || ||||||||| ||||| Sbjct 3776537 CCAGGGGTTGACAATCTGGAATTCACCAGCAAGAACTCGTCGAGAGTAAATGTTGGAAGT 3776478 Query 293373 GATGGGTTCGGCTGCCTCAACAGACCCGCAAATCTGAGCAGTAGATGCGGTAGGCATAAG 293432 | ||| ||| |||| | || |||||| | ||| || || || ||||| | Sbjct 3776477 GTAGGGCTCGAAGCACTCATTGAAACCAAGAATCTGGGAAGTGGAGGCAGTGGGCATGGG 3776418 Query 293433 AGCAGTCGTCAGAGAGTTCCTCACACC---CTTCTTGACACGCGATTCGAGACCCGCCCA 293489 ||| | ||| ||||| | || ||| |||| ||| | | |||| | |||| Sbjct 3776417 AGCGACCAACAGCGAGTTTCGCATACCAGTCTTCATGATCTTGGCCTTGAGATCGTCCCA 3776358 Query 293490 GTCC-AGAGCAGTCTGA-GGTGTAACACCCCAGAGATGATACTGCATGATACCCTTGCTG 293547 ||| | ||| || || || || || |||||||| |||| | | ||||||| | Sbjct 3776357 CTCCCACAGC--TCGGAAGGAGTCACGTTCCAGAGATCGAACTGGAGGTCACCCTTGGAG 3776300 Query 293548 GCAGGAGACCCCTCAAAGGTGGGATGGGGGCCATGCTCATCAGAGAGCTCGCAAGATGCC 293607 ||||| || |||| ||||| | || || | |||| || | |||| |||| || Sbjct 3776299 GCAGGGGAGCCCTGGAAGGTCTCGTAGGCACCGTCCTCAAGAGCCATCTCGTAAGAGGCT 3776240 Query 293608 TCAACAGCAGCAAAGTAAATGTGCTCGAAGATCTCACGGTTGAGCTTGCGAGCCTGCTCA 293667 || ||||| | ||| ||| ||||||||||| ||||||||| |||| ||| Sbjct 3776239 TCGACAGCTCCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCTTCTTGGCCTCCTCG 3776180 Query 293668 GAGTCAAACGGCA-TCTTCAGCTGGAAGAACACATCCTGCAGACCCTGTACACCTACACC 293726 || ||||| || | || | || | ||| || ||||||||| ||||| | | | Sbjct 3776179 GACTCAAATGGGAGTCGT-AGAGCCATGAAGGTGTCGGCCAGACCCTGGACACCCAGAGC 3776121 Query 293727 AACGGGGCGACGACGCTTGTTGCTCGTCTCTGCCTCGGGAACCG 293770 || ||| || | ||| |||| | ||| |||||||| |||| Sbjct 3776120 AATGGGTCGGTGTCGCATGTTAGACTTCTTGGCCTCGGGGACCG 3776077 >seq4 Length=3654803 Score = 87.8 bits (96), Expect = 4e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 217837 TGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCCACGCTGGCAACCGCTGGTCTTGCC 217896 ||||| ||||| || || ||||||||||| || || |||| | |||||| || | Sbjct 3112459 TGCACGCTCATTCTCACTGAGGGAGACTCCGCCATGACCATGGCGAACGCTGGACTGTCT 3112518 Query 217897 GTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTCCGTGGTAAGCTGCTCAACGTGCGC 217956 ||| | ||||| ||| | ||||| ||| || || ||||||||| ||||||||||||| Sbjct 3112519 GTGATTGGTCGAGAACGATATGGCGCCTTTCCTCTGCGTGGTAAGATGCTCAACGTGCGA 3112578 Query 217957 GATGCCTC 217964 || || || Sbjct 3112579 GAGGCGTC 3112586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836418094389