Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31] 29 sequences; 20,308,363 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq2 239 8e-58 seq6 159 6e-34 seq5 114 2e-20 >seq2 Length=3052417 Score = 239 bits (264), Expect = 8e-58 Identities = 597/894 (67%), Gaps = 27/894 (3%) Strand=Plus/Plus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||| || ||||||||||| || || || || |||||| ||||||| |||||| | Sbjct 506579 CATGACACCGGCCTTCTGGTAGTCGGACACTCGCTTCTCGAAAAAGTTGGTCTTGCCGGC 506638 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054 || || ||| |||||||||||| |||||||| || | | || ||||| || ||| Sbjct 506639 CAGAGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGAGTTATACACCTTGGAGTTACC 506698 Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114 ||| || | | |||||||| || |||||||||||||||| |||||| | | ||| Sbjct 506699 GAGAGCAACTAGCAGACGGTCAGCGACAAACTCGATGTACTGGCACATCAGCTTGGCGTT 506758 Query 10115 CATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGC 10174 ||| |||| || | ||||| | ||||| || ||| |||| ||| || | || | Sbjct 506759 CATACCAAGCAGACCACAGGGCAGAGCGTCAGTAAGGAACTCCTGCTCGATGCCAACAG- 506817 Query 10175 TTCCTCGACGATG--CTCTTTACCA-----CGTCAAGGGACAGCTTGTTCTCGAGCTTCG 10227 ||||||| ||| || | | || | | |||| | |||||| || | || Sbjct 506818 --CCTCGACAATGACGTCCTCAACAATCTTCTTTGAGGGTC----GGTTCTCAAGGTGCG 506871 Query 10228 AATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGG 10287 | | || || |||| | ||| || |||||||| ||| ||||| |||||||| Sbjct 506872 AGAAAAGCAGGCAGGCAAAGTCAGTGTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGG 506931 Query 10288 ACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACC 10347 | || || || |||||||| || || || |||||||| |||| | ||| || | Sbjct 506932 AGAAGGTGAGGCCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGC 506991 Query 10348 CGGAGAACAGAAGA--CCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAA---GGA 10402 |||||| |||||| ||||| ||| | |||| | ||| |||||| | || ||| Sbjct 506992 CGGAGA--AGAAGATGCCCTCGACGGCGGCAAAGGCAATGAGTCGCTCTCCAAAGGTGGA 507049 Query 10403 GCGGTCGCGCGAAAAGTATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCA-GGGATCG 10461 ||| || | | || |||||| | ||||| |||| ||| ||||| | Sbjct 507050 CTCTTCGTCGGAGATCCACTTGAGGGCCCAGTCGGCCTT-TTTCTTGATGCAGGGGATGG 507108 Query 10462 TCTCGATAGCCTCGAAGAGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGA 10521 ||||||| || | ||| || | | | ||||| | ||||| || | || | | Sbjct 507109 TCTCGATGGCGTTGAACAGGTAGGTTCGCTCTTTGGGGTCCTTGATGTATGTGTCGATCA 507168 Query 10522 GCAGGGAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAA-CATA 10580 |||| ||||| |||| ||||| | |||| | |||| | ||||||| || Sbjct 507169 GCAGCGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACT 507228 Query 10581 CGTGCCGAGGGGTCCGTGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATG 10640 | ||| |||| || || || ||| || | ||||||||| | || || Sbjct 507229 TG-GCCTCGGGGGCCTGCACCTCGCCGGAGAATCGCTCAACCAGGTTCTCGTTAACGATA 507287 Query 10641 CCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTC 10700 || ||| | | |||||||| |||| | ||| ||||||| |||||||| | ||| Sbjct 507288 CCGTCGGAGGCAGCAAAGAATGCGAGAACGTGGGAGATGAAGAACCGCTCATCGTTGTTG 507347 Query 10701 AGT-TTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAA 10759 ||| | ||| | |||||| ||| |||| || | | |||||| | |||||||| Sbjct 507348 AGTCTGTTCTC-CCAGTCACCCATGTCCTTTCCAAGATCAATCTCCTCAGCTGTCCAGAA 507406 Query 10760 AGTGGCAACGGCCTTCTTGTACATCTGGAAAATGTCGGGGTACCGGATGGGGAA 10813 || ||| ||||||||||||||||||| | || ||| ||||| |||||||||| Sbjct 507407 AGAGGCCTCGGCCTTCTTGTACATCTGCCAGATTTCGTGGTACTGGATGGGGAA 507460 Score = 134 bits (148), Expect = 3e-26 Identities = 438/669 (65%), Gaps = 20/669 (3%) Strand=Plus/Minus Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037 || |||||||| | ||||||||| |||||| | ||| ||| | ||| | ||| || | Sbjct 586317 TATCGCCACTGCAAGTACTGGTTAGGGGTCTTCTCCTTGTGCTGCTCGACATGCTGCAGC 586258 Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTC 225097 || |||||||| | ||| | || |||| ||||| |||||| || ||| || Sbjct 586257 GCGTGCTGGGCAATGTATCCGATTCGCAGATTGGGGTGCTTCTCGACCTTACCCTCGGTA 586198 Query 225098 GGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCA 225157 || |||||||||| || ||||||||||| || | ||| || || || |||||||| Sbjct 586197 GGCACCACCTCGCCGGTCAGCACCTTGATGAGGGTTGACTTTCCAGCTCCGTTGGGGCCC 586138 Query 225158 ATCACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGTTGCTGA---AGATCTCA 225214 | ||| | | || || ||||| | || | | |||| ||| || || Sbjct 586137 AGAACGGCGACTCGAGACGACATGGAAAGCGAACAAGAGGCGTTCTTGAGAGAGGGCTTG 586078 Query 225215 GGGCCAGTTTGGTAAGCAAAGGCCACGCCACGCAGCTTCATG--ATGGCACGGTCCTTGG 225272 ||| || | |||| | |||| | | || || | || | ||||| ||| |||| Sbjct 586077 GGGGCATTGGGGTAGGTGAAGGACGCATCA-ACAAC-TCGGGCAATGGCTCGGGTGTTGG 586020 Query 225273 AAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTT--GGTCACCGCGTCCTT 225330 | || ||| ||| | ||||| ||||| || ||| ||| | ||| | Sbjct 586019 ATCGAACACCAGACAGAATACCGGGAGGAGGGAAGGCCATCTTCAGGT--TGGTGTCGGT 585962 Query 225331 CAGGTCGTAGTAAGATGCAGCCTCGGGTCG--CTTTGCCACGAAAGCAGACAGGTTTCCG 225388 ||| ||||||||| | |||||||||| | ||| || || | | |||||| || Sbjct 585961 CAGAGTGTAGTAAGACTTACCCTCGGGTCGGACCTTG--ACAAAGTCGGCCAGGTTACCC 585904 Query 225389 AGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACTGCGTCA 225448 || | |||||| || || ||||| ||| |||| | | ||| || || || Sbjct 585903 TTGTAGTAGACGAGCTT---CTTATTTTCGTAGTGAGCAATGTCGGTGCAGACGGCATCC 585847 Query 225449 AGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGC 225508 ||||| |||||||| || ||||| || | || | | || || || || |||| Sbjct 585846 AGGAAACCAGAGTCATGTGACACGATCAGAGAGGTGATGTCGGTGTGGGCCACAAGGT-A 585788 Query 225509 GTGATG-AGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAG 225567 || || ||||| ||||| | || |||| |||||| ||||| || || || ||||| Sbjct 585787 GTCCTGCAGCCACTTGACGTTTCCAACATCCAGGTGGTTAGTAGGCTCATCGAGCAGCAG 585728 Query 225568 GATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGA 225627 ||||| || | ||||| ||||| || | || ||||||||| ||||| || || || Sbjct 585727 AATGTCGGCCTTCATGAGCATGGCTCGTGCCAGCTCCAGCTTCATCTTCCATCCTCCAGA 585668 Query 225628 CAGGGAGCC 225636 ||| | ||| Sbjct 585667 CAGAGCGCC 585659 >seq6 Length=3777980 Score = 159 bits (176), Expect = 6e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| |||| || | || || |||||||| || |||||||| || || || Sbjct 1363901 CCACCTCGAAGTCGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 1363842 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || |||| || ||||| || ||| Sbjct 1363841 AGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 1363782 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | ||||||| ||||||||||| | || || || Sbjct 1363781 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 1363722 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | |||||| || || || || ||||||||||| || ||||||||| Sbjct 1363721 TCGAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATT 1363674 Score = 147 bits (162), Expect = 4e-30 Identities = 168/226 (74%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || |||| || | || || |||||||| || |||||||| || ||||| Sbjct 1245210 CCTCCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAA 1245151 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || |||| || ||||| || || Sbjct 1245150 AGAGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGG 1245091 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | ||||||| || |||||||| | || || || Sbjct 1245090 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCCACC 1245031 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCA 68460 || | |||||| || || || || ||||||||||| || || |||| Sbjct 1245030 TCGAGGGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 1244985 >seq5 Length=4047401 Score = 114 bits (126), Expect = 2e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || |||||||| || || ||||| || || || || || | ||||| || | |||| Sbjct 2184037 TGGAGAGTGGACTCCTTCTGAATGTTGTAGTCAGACAGGGTTCGGCCATCCTCGAGCTGC 2183978 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || |||||||| || |||| || ||||| || ||||| || |||||||| |||||||| Sbjct 2183977 TTACCGGCGAAAATCAGTCGCTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGAATCTTG 2183918 Query 68379 GCCTTGACGGCCTCGATGGTGTC 68401 | ||||||| ||||||||||| Sbjct 2183917 GACTTGACGTTGTCGATGGTGTC 2183895 Score = 114 bits (126), Expect = 2e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 ||||| || | |||||| || || || || |||| || ||||| || ||||| || ||| Sbjct 2184220 CCATCCTCGAGCTGCTTACCAGCAAAAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCC 2184161 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| |||||||| | |||||| || || ||||| | || || || || | ||| Sbjct 2184160 TTGTCCTGAATCTTGGACTTGACATTATCAATAGTGTCAGAAGACTCAACCTCGAGAGTG 2184101 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| ||||| || || ||||||||||| |||||||| Sbjct 2184100 ATGGTCTTTCCAGTCAGAGTCTTGACGAAAATCTGCAT 2184063 Score = 93.3 bits (102), Expect = 8e-14 Identities = 367/566 (65%), Gaps = 20/566 (4%) Strand=Plus/Minus Query 225446 TCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGG 225505 || ||||| |||||||||||||| || |||||||| | | | | |||| || ||| Sbjct 1593558 TCGAGGAAACCAGAGTCGTGGGAGACGATGATGGAGGTGA--TACCACAGG-TGTTAAGG 1593502 Query 225506 TGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGC 225565 | ||| ||||| || |||||| | |||| ||||| ||||| || || || ||| Sbjct 1593501 TAGTTGACCAGCCAAGCAACGTTGACGGTATCCAGATGGTTGGTAGGCTCATCAAGCAGC 1593442 Query 225566 AGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCG 225625 ||||| || || | ||||| ||| | |||| ||||||||| ||||| || || Sbjct 1593441 AGGATATCGGCCTTTCGGAGGACGGCAGTGGCAAGAGCCAGCTTCATCTTCCATCCACCA 1593382 Query 225626 GACAGGGAGCCGATTGAAACAGAGTGCTTAGCTTCGTCA---AAGCCGTACTCCAGGAGC 225682 ||||| ||| ||| | || | | | | |||||| || | | || || ||| Sbjct 1593381 GACAGAGAGGTGATGG--GCATTCGGGTCATC-TCGTCAGTGAACAGGAAGTCAAGCAGC 1593325 Query 225683 GTCT---GGATAATGCGCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAGAGG 225739 || ||| ||| | | | || | || || | |||| || || | Sbjct 1593324 TGCTTTCGGACCTCCTCCTCAGTACCGATG---GACTCACCG--GCGGTCTTTCG-GACG 1593271 Query 225740 TAATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGTC 225799 || || ||| | |||| | | | |||||||||||||||| ||| | || || Sbjct 1593270 TAGTCGACAACGTTGGTGTCGGCGTGGGTACCGTCAATGTCGTGGTCGACGAAGACAGTT 1593211 Query 225800 CGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGG 225859 || || |||||| ||||| | ||| || || ||||| || || | |||| Sbjct 1593210 CGACACTCCTCCTGGGTGGGGAAACCCTCGACCTGACCGTTGGCAATGGCTCGCATCAGG 1593151 Query 225860 GTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTG 225919 || ||| || || ||||| ||||| ||| ||||| | || ||||||| || | Sbjct 1593150 GTGGACTTACCAGCACCGTTAGGACCACAGAGACCGTATCGTCGGCCTCGCTTGA-GTCG 1593092 Query 225920 -AGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCA 225978 || | || |||||| || ||||| |||| || || || |||||||| || | || Sbjct 1593091 CAGCTGGGTTCGGTTCAGCAGAATCTTAGCACCGTAAGCCAGAGAGAACTCACAGTTACA 1593032 Query 225979 CAGGTCCTCACCCTCCTCGGTCTCCT 226004 ||| ||||| ||||| ||| ||||| Sbjct 1593031 CAGATCCTCGCCCTCGTCGTCCTCCT 1593006 Score = 93.3 bits (102), Expect = 8e-14 Identities = 121/167 (72%), Gaps = 8/167 (5%) Strand=Plus/Minus Query 224495 GAAAGCGCGCCAAGCGACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAACG 224554 || || || ||||| || || || || || |||| || |||||||| |||| ||||| Sbjct 1594554 GACAGAGCTCCAAGAGAGTCTCGATCCAGATAGTTGGTAGGCTCATCAAGGACGATAAGA 1594495 Query 224555 TGGGGGCACTGCCA----CAGGGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGA 224610 ||||| | |||||| |||| | ||| ||| ||||| ||||||||||| ||||| Sbjct 1594494 TGGGGTCGCTGCCAGGTACAGG----CGGCAAGCACAAGCTTGACCTTCTGACCACCAGA 1594439 Query 224611 GAGGCCGCGGATCCGCGAGTGAGTCGTGAATTCGGGGTCAAGACCAA 224657 || || ||||| || ||||||| | ||||| || ||||||| Sbjct 1594438 CAGACCTCGGATTCGAGAGTGAGAGACAAGCTCGGGCTCGAGACCAA 1594392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921622065911880