Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31]
29 sequences; 20,308,363 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq2 239 8e-58
seq6 159 6e-34
seq5 114 2e-20
>seq2
Length=3052417
Score = 239 bits (264), Expect = 8e-58
Identities = 597/894 (67%), Gaps = 27/894 (3%)
Strand=Plus/Plus
Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994
|||||| || ||||||||||| || || || || |||||| ||||||| |||||| |
Sbjct 506579 CATGACACCGGCCTTCTGGTAGTCGGACACTCGCTTCTCGAAAAAGTTGGTCTTGCCGGC 506638
Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054
|| || ||| |||||||||||| |||||||| || | | || ||||| || |||
Sbjct 506639 CAGAGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGAGTTATACACCTTGGAGTTACC 506698
Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114
||| || | | |||||||| || |||||||||||||||| |||||| | | |||
Sbjct 506699 GAGAGCAACTAGCAGACGGTCAGCGACAAACTCGATGTACTGGCACATCAGCTTGGCGTT 506758
Query 10115 CATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGC 10174
||| |||| || | ||||| | ||||| || ||| |||| ||| || | || |
Sbjct 506759 CATACCAAGCAGACCACAGGGCAGAGCGTCAGTAAGGAACTCCTGCTCGATGCCAACAG- 506817
Query 10175 TTCCTCGACGATG--CTCTTTACCA-----CGTCAAGGGACAGCTTGTTCTCGAGCTTCG 10227
||||||| ||| || | | || | | |||| | |||||| || | ||
Sbjct 506818 --CCTCGACAATGACGTCCTCAACAATCTTCTTTGAGGGTC----GGTTCTCAAGGTGCG 506871
Query 10228 AATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGG 10287
| | || || |||| | ||| || |||||||| ||| ||||| ||||||||
Sbjct 506872 AGAAAAGCAGGCAGGCAAAGTCAGTGTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGG 506931
Query 10288 ACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACC 10347
| || || || |||||||| || || || |||||||| |||| | ||| || |
Sbjct 506932 AGAAGGTGAGGCCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGC 506991
Query 10348 CGGAGAACAGAAGA--CCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAA---GGA 10402
|||||| |||||| ||||| ||| | |||| | ||| |||||| | || |||
Sbjct 506992 CGGAGA--AGAAGATGCCCTCGACGGCGGCAAAGGCAATGAGTCGCTCTCCAAAGGTGGA 507049
Query 10403 GCGGTCGCGCGAAAAGTATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCA-GGGATCG 10461
||| || | | || |||||| | ||||| |||| ||| ||||| |
Sbjct 507050 CTCTTCGTCGGAGATCCACTTGAGGGCCCAGTCGGCCTT-TTTCTTGATGCAGGGGATGG 507108
Query 10462 TCTCGATAGCCTCGAAGAGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGA 10521
||||||| || | ||| || | | | ||||| | ||||| || | || | |
Sbjct 507109 TCTCGATGGCGTTGAACAGGTAGGTTCGCTCTTTGGGGTCCTTGATGTATGTGTCGATCA 507168
Query 10522 GCAGGGAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAA-CATA 10580
|||| ||||| |||| ||||| | |||| | |||| | ||||||| ||
Sbjct 507169 GCAGCGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACT 507228
Query 10581 CGTGCCGAGGGGTCCGTGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATG 10640
| ||| |||| || || || ||| || | ||||||||| | || ||
Sbjct 507229 TG-GCCTCGGGGGCCTGCACCTCGCCGGAGAATCGCTCAACCAGGTTCTCGTTAACGATA 507287
Query 10641 CCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTC 10700
|| ||| | | |||||||| |||| | ||| ||||||| |||||||| | |||
Sbjct 507288 CCGTCGGAGGCAGCAAAGAATGCGAGAACGTGGGAGATGAAGAACCGCTCATCGTTGTTG 507347
Query 10701 AGT-TTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAA 10759
||| | ||| | |||||| ||| |||| || | | |||||| | ||||||||
Sbjct 507348 AGTCTGTTCTC-CCAGTCACCCATGTCCTTTCCAAGATCAATCTCCTCAGCTGTCCAGAA 507406
Query 10760 AGTGGCAACGGCCTTCTTGTACATCTGGAAAATGTCGGGGTACCGGATGGGGAA 10813
|| ||| ||||||||||||||||||| | || ||| ||||| ||||||||||
Sbjct 507407 AGAGGCCTCGGCCTTCTTGTACATCTGCCAGATTTCGTGGTACTGGATGGGGAA 507460
Score = 134 bits (148), Expect = 3e-26
Identities = 438/669 (65%), Gaps = 20/669 (3%)
Strand=Plus/Minus
Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037
|| |||||||| | ||||||||| |||||| | ||| ||| | ||| | ||| || |
Sbjct 586317 TATCGCCACTGCAAGTACTGGTTAGGGGTCTTCTCCTTGTGCTGCTCGACATGCTGCAGC 586258
Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTC 225097
|| |||||||| | ||| | || |||| ||||| |||||| || ||| ||
Sbjct 586257 GCGTGCTGGGCAATGTATCCGATTCGCAGATTGGGGTGCTTCTCGACCTTACCCTCGGTA 586198
Query 225098 GGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCA 225157
|| |||||||||| || ||||||||||| || | ||| || || || ||||||||
Sbjct 586197 GGCACCACCTCGCCGGTCAGCACCTTGATGAGGGTTGACTTTCCAGCTCCGTTGGGGCCC 586138
Query 225158 ATCACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGTTGCTGA---AGATCTCA 225214
| ||| | | || || ||||| | || | | |||| ||| || ||
Sbjct 586137 AGAACGGCGACTCGAGACGACATGGAAAGCGAACAAGAGGCGTTCTTGAGAGAGGGCTTG 586078
Query 225215 GGGCCAGTTTGGTAAGCAAAGGCCACGCCACGCAGCTTCATG--ATGGCACGGTCCTTGG 225272
||| || | |||| | |||| | | || || | || | ||||| ||| ||||
Sbjct 586077 GGGGCATTGGGGTAGGTGAAGGACGCATCA-ACAAC-TCGGGCAATGGCTCGGGTGTTGG 586020
Query 225273 AAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTT--GGTCACCGCGTCCTT 225330
| || ||| ||| | ||||| ||||| || ||| ||| | ||| |
Sbjct 586019 ATCGAACACCAGACAGAATACCGGGAGGAGGGAAGGCCATCTTCAGGT--TGGTGTCGGT 585962
Query 225331 CAGGTCGTAGTAAGATGCAGCCTCGGGTCG--CTTTGCCACGAAAGCAGACAGGTTTCCG 225388
||| ||||||||| | |||||||||| | ||| || || | | |||||| ||
Sbjct 585961 CAGAGTGTAGTAAGACTTACCCTCGGGTCGGACCTTG--ACAAAGTCGGCCAGGTTACCC 585904
Query 225389 AGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACTGCGTCA 225448
|| | |||||| || || ||||| ||| |||| | | ||| || || ||
Sbjct 585903 TTGTAGTAGACGAGCTT---CTTATTTTCGTAGTGAGCAATGTCGGTGCAGACGGCATCC 585847
Query 225449 AGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGC 225508
||||| |||||||| || ||||| || | || | | || || || || ||||
Sbjct 585846 AGGAAACCAGAGTCATGTGACACGATCAGAGAGGTGATGTCGGTGTGGGCCACAAGGT-A 585788
Query 225509 GTGATG-AGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAG 225567
|| || ||||| ||||| | || |||| |||||| ||||| || || || |||||
Sbjct 585787 GTCCTGCAGCCACTTGACGTTTCCAACATCCAGGTGGTTAGTAGGCTCATCGAGCAGCAG 585728
Query 225568 GATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGA 225627
||||| || | ||||| ||||| || | || ||||||||| ||||| || || ||
Sbjct 585727 AATGTCGGCCTTCATGAGCATGGCTCGTGCCAGCTCCAGCTTCATCTTCCATCCTCCAGA 585668
Query 225628 CAGGGAGCC 225636
||| | |||
Sbjct 585667 CAGAGCGCC 585659
>seq6
Length=3777980
Score = 159 bits (176), Expect = 6e-34
Identities = 172/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || ||||| |||| || | || || |||||||| || |||||||| || || ||
Sbjct 1363901 CCACCTCGAAGTCGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 1363842
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| |||||||| || |||| || ||||| || |||
Sbjct 1363841 AGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 1363782
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || |||||||| || ||||| | ||||||| ||||||||||| | || || ||
Sbjct 1363781 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 1363722
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462
|| | |||||| || || || || ||||||||||| || |||||||||
Sbjct 1363721 TCGAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATT 1363674
Score = 147 bits (162), Expect = 4e-30
Identities = 168/226 (74%), Gaps = 0/226 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
||||| || || |||| || | || || |||||||| || |||||||| || |||||
Sbjct 1245210 CCTCCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAA 1245151
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| |||||||| || |||| || ||||| || ||
Sbjct 1245150 AGAGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGG 1245091
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || |||||||| || ||||| | ||||||| || |||||||| | || || ||
Sbjct 1245090 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCCACC 1245031
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCA 68460
|| | |||||| || || || || ||||||||||| || || ||||
Sbjct 1245030 TCGAGGGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 1244985
>seq5
Length=4047401
Score = 114 bits (126), Expect = 2e-20
Identities = 111/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318
|| || |||||||| || || ||||| || || || || || | ||||| || | ||||
Sbjct 2184037 TGGAGAGTGGACTCCTTCTGAATGTTGTAGTCAGACAGGGTTCGGCCATCCTCGAGCTGC 2183978
Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378
|| |||||||| || |||| || ||||| || ||||| || |||||||| ||||||||
Sbjct 2183977 TTACCGGCGAAAATCAGTCGCTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGAATCTTG 2183918
Query 68379 GCCTTGACGGCCTCGATGGTGTC 68401
| ||||||| |||||||||||
Sbjct 2183917 GACTTGACGTTGTCGATGGTGTC 2183895
Score = 114 bits (126), Expect = 2e-20
Identities = 120/158 (76%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363
||||| || | |||||| || || || || |||| || ||||| || ||||| || |||
Sbjct 2184220 CCATCCTCGAGCTGCTTACCAGCAAAAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCC 2184161
Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423
||||| |||||||| | |||||| || || ||||| | || || || || | |||
Sbjct 2184160 TTGTCCTGAATCTTGGACTTGACATTATCAATAGTGTCAGAAGACTCAACCTCGAGAGTG 2184101
Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| ||||| || || ||||||||||| ||||||||
Sbjct 2184100 ATGGTCTTTCCAGTCAGAGTCTTGACGAAAATCTGCAT 2184063
Score = 93.3 bits (102), Expect = 8e-14
Identities = 367/566 (65%), Gaps = 20/566 (4%)
Strand=Plus/Minus
Query 225446 TCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGG 225505
|| ||||| |||||||||||||| || |||||||| | | | | |||| || |||
Sbjct 1593558 TCGAGGAAACCAGAGTCGTGGGAGACGATGATGGAGGTGA--TACCACAGG-TGTTAAGG 1593502
Query 225506 TGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGC 225565
| ||| ||||| || |||||| | |||| ||||| ||||| || || || |||
Sbjct 1593501 TAGTTGACCAGCCAAGCAACGTTGACGGTATCCAGATGGTTGGTAGGCTCATCAAGCAGC 1593442
Query 225566 AGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCG 225625
||||| || || | ||||| ||| | |||| ||||||||| ||||| || ||
Sbjct 1593441 AGGATATCGGCCTTTCGGAGGACGGCAGTGGCAAGAGCCAGCTTCATCTTCCATCCACCA 1593382
Query 225626 GACAGGGAGCCGATTGAAACAGAGTGCTTAGCTTCGTCA---AAGCCGTACTCCAGGAGC 225682
||||| ||| ||| | || | | | | |||||| || | | || || |||
Sbjct 1593381 GACAGAGAGGTGATGG--GCATTCGGGTCATC-TCGTCAGTGAACAGGAAGTCAAGCAGC 1593325
Query 225683 GTCT---GGATAATGCGCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAGAGG 225739
|| ||| ||| | | | || | || || | |||| || || |
Sbjct 1593324 TGCTTTCGGACCTCCTCCTCAGTACCGATG---GACTCACCG--GCGGTCTTTCG-GACG 1593271
Query 225740 TAATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGTC 225799
|| || ||| | |||| | | | |||||||||||||||| ||| | || ||
Sbjct 1593270 TAGTCGACAACGTTGGTGTCGGCGTGGGTACCGTCAATGTCGTGGTCGACGAAGACAGTT 1593211
Query 225800 CGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGG 225859
|| || |||||| ||||| | ||| || || ||||| || || | ||||
Sbjct 1593210 CGACACTCCTCCTGGGTGGGGAAACCCTCGACCTGACCGTTGGCAATGGCTCGCATCAGG 1593151
Query 225860 GTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTG 225919
|| ||| || || ||||| ||||| ||| ||||| | || ||||||| || |
Sbjct 1593150 GTGGACTTACCAGCACCGTTAGGACCACAGAGACCGTATCGTCGGCCTCGCTTGA-GTCG 1593092
Query 225920 -AGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCA 225978
|| | || |||||| || ||||| |||| || || || |||||||| || | ||
Sbjct 1593091 CAGCTGGGTTCGGTTCAGCAGAATCTTAGCACCGTAAGCCAGAGAGAACTCACAGTTACA 1593032
Query 225979 CAGGTCCTCACCCTCCTCGGTCTCCT 226004
||| ||||| ||||| ||| |||||
Sbjct 1593031 CAGATCCTCGCCCTCGTCGTCCTCCT 1593006
Score = 93.3 bits (102), Expect = 8e-14
Identities = 121/167 (72%), Gaps = 8/167 (5%)
Strand=Plus/Minus
Query 224495 GAAAGCGCGCCAAGCGACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAACG 224554
|| || || ||||| || || || || || |||| || |||||||| |||| |||||
Sbjct 1594554 GACAGAGCTCCAAGAGAGTCTCGATCCAGATAGTTGGTAGGCTCATCAAGGACGATAAGA 1594495
Query 224555 TGGGGGCACTGCCA----CAGGGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGA 224610
||||| | |||||| |||| | ||| ||| ||||| ||||||||||| |||||
Sbjct 1594494 TGGGGTCGCTGCCAGGTACAGG----CGGCAAGCACAAGCTTGACCTTCTGACCACCAGA 1594439
Query 224611 GAGGCCGCGGATCCGCGAGTGAGTCGTGAATTCGGGGTCAAGACCAA 224657
|| || ||||| || ||||||| | ||||| || |||||||
Sbjct 1594438 CAGACCTCGGATTCGAGAGTGAGAGACAAGCTCGGGCTCGAGACCAA 1594392
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921622065911880
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