Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31] 29 sequences; 20,308,363 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq5 116 8e-21 seq2 86.0 1e-11 >seq5 Length=4047401 Score = 116 bits (128), Expect = 8e-21 Identities = 130/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 334181 GGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCC 334240 |||||| || || | ||||||||| |||| || |||||||| || || ||||| || || Sbjct 1593193 GGGGAAACCCTCGACCTGACCGTTGGCAATGGCTCGCATCAGGGTGGACTTACCAGCACC 1593134 Query 334241 GTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAG 334300 ||| || ||||| |||||||| || || ||||| || | | | || |||||| Sbjct 1593133 GTTAGGACCACAGAGACCGTATCGTCGGCCTCGCTTGAGTCGCAGCTGGGTTCGGTTCAG 1593074 Query 334301 AAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 334354 ||||| || |||| || |||||||| || ||||| | |||||||||||| || Sbjct 1593073 CAGAATCTTAGCACCGTAAGCCAGAGAGAACTCACAGTTACACAGATCCTCGCC 1593020 >seq2 Length=3052417 Score = 86.0 bits (94), Expect = 1e-11 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 243511 GAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGC 243570 || || |||| | ||| |||| ||| || |||||| | || || | || |||| Sbjct 506821 GAGGCTGTTGGCATCGAGCAGGAGTTCCTTACTGACGCTCTGCCCTGTGGTCTGCTTGGT 506762 Query 243571 ATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCG 243630 |||||| | | || ||| | ||||||||||| || || || ||||| | | | || Sbjct 506761 ATGAACGCCAAGCTGATGTGCCAGTACATCGAGTTTGTCGCTGACCGTCTGCTAGTTGCT 506702 Query 243631 CTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCG 243690 || ||| | || ||||| ||||||| |||||||| | ||| |||||| ||| || Sbjct 506701 CTCGGTAACTCCAAGGTGTATAACTCCACCAACCCCTTCGACTTCATGGAGAACATCTCT 506642 Query 243691 CTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 || || || || ||||| ||||| ||||| || Sbjct 506641 CTGGCCGGCAAGACCAACTTTTTCGAGAAGCGAGT 506607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879590211150