Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31] 29 sequences; 20,308,363 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq5 89.7 5e-13 seq6 86.0 6e-12 >seq5 Length=4047401 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | || || || ||||| | || || || || ||||||||||| || | Sbjct 2184062 ACCACCTCGGAGTCGGAGAACGAGATGGAGAGTGGACTCCTTCTGAATGTTGTAGTCAGA 2184003 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| || | || || |||||||| ||||| |||| || ||||||||||| ||||| Sbjct 2184002 CAGGGTTCGGCCATCCTCGAGCTGCTTACCGGCGAAAATCAGTCGCTGCTGGTCCGGAGG 2183943 Query 64336 AATTCCTTCTTTTTCTTGTATTTT 64359 |||||| || || || || || || Sbjct 2183942 AATTCCCTCCTTGTCCTGAATCTT 2183919 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348 || || |||||||| || ||| |||| || ||||||||||| || |||||||| || || Sbjct 2184217 TCCTCGAGCTGCTTACCAGCAAAAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTG 2184158 Query 64349 TCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACG 64408 || || || || ||| ||| || | || ||| | || || || | ||| | | Sbjct 2184157 TCCTGAATCTTGGACTTGACATTATCAATAGTGTCAGAAGACTCAACCTCGAGAGTGATG 2184098 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || |||| ||| || |||||||| ||||| Sbjct 2184097 GTCTTTCCAGTCAGAGTCTTGACGAAAATCTGCAT 2184063 >seq6 Length=3777980 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | || || || ||||| | || || || || || |||||||| || | Sbjct 1363902 ACCACCTCGAAGTCGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 1363843 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| || |||| || |||||||| ||||| | || || ||||||||||| || || Sbjct 1363842 AAGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGG 1363783 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 |||||| || || || || || || ||| || || | || || | ||||| Sbjct 1363782 AATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 1363723 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTT 64445 || | || | ||||| ||||| | || || || ||||| ||||||| Sbjct 1363722 CTCGAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATTT 1363673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499644618878760