Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31] 29 sequences; 20,308,363 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq6 315 7e-81 seq4 134 1e-26 >seq6 Length=3777980 Score = 315 bits (348), Expect = 7e-81 Identities = 1087/1666 (65%), Gaps = 46/1666 (3%) Strand=Plus/Plus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCT-CAAGATGGATGGCAG 93776 ||| | ||||||| |||||| || |||||| | ||||| || | || | | || Sbjct 3775035 TACAACTACTTTGGCTTCAAGACCCTGGAGCGAGCATACCTGCTGCGAG-TCAACGGTGC 3775093 Query 93777 GGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGA 93836 ||| |||||||||| || ||| || | ||||| ||| | |||| || |||||| || | Sbjct 3775094 TGTTGCCGAGCGACCCCAACAGATGATCATGCGAGTCTCTGTCGGTATCCACGGCGACAA 3775153 Query 93837 CAT-GCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCCA 93895 ||| ||| ||| | || || | ||| | ||| | || || Sbjct 3775154 CATTGCCCGGGCCATTGAGACCTA-CAACTATATGTCTCAGAAGTACTTCACTCACGCTT 3775212 Query 93896 CCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGA 93955 |||| || || | |||||| || || || ||| |||||||| ||||||||||| | | Sbjct 3775213 CCCCCACTCTCTACAACGCCGGAACTCCCCAGCCTCAGATGTCGTCGTGTTTCCTTGTCA 3775272 Query 93956 CGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCT 94015 | |||| |||||||||| ||| || | ||| | |||||| |||||| || | Sbjct 3775273 ACATGAAGGACGACTCCATCGACGGCATCTACGATACCCTCAAAACCTGTGCTCTGATTT 3775332 Query 94016 CAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACA 94075 | || | || || || ||||| | | ||||| || | || || | || ||||||| Sbjct 3775333 CCAAGTCTGCCGGCGGTATCGGTCTGTCTATCCACAACATCCGAGCTACTGGCTCCTACA 3775392 Query 94076 TCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACG 94135 | || || || || ||||||||||| |||| || ||||| || |||| |||||| Sbjct 3775393 TTGCTGGAACTAACGGAACCTCCAACGGTATCGTGCCCATGCTGCGTGTCTATAACAACA 3775452 Query 94136 CGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCG 94195 | || || ||||| || ||||| || | | | ||| | || || | || || | Sbjct 3775453 CCGCCCGATACGTTGATCAGGGAGGCAACAAGCGACCTGGTGCCTTTGCAATGTACCTTG 3775512 Query 94196 AGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATC 94255 |||||||||||| || | | ||| ||| ||||||||||||||||| || || Sbjct 3775513 AGCCCTGGCACGACGATATCTTCGAGTTCTGCGAGCTGCGAAAGAACCACGGAAAGGA-- 3775570 Query 94256 TGGAGA---GGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAAC 94312 |||| | ||| ||||||| ||| ||||| ||| | || ||||| || ||| | | Sbjct 3775571 -AGAGATTCGAGCCCGAGACCTGTTCCTGGCTCTGTGGATCCCCGACCTGTTCATGGAGC 3775629 Query 94313 GCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCG 94372 | |||||| | ||| | | |||| || | || ||||| || || ||||| || || Sbjct 3775630 GAGTCGAGCAGAACGCTGAATGGACCCTGATGTGCCCCAACGAGTGCCCCGGTCTTGACG 3775689 Query 94373 ACGTTTGTG--GATCGCGTTTTGAAG-ACTTGTATGCTCGTTACGAATCGCAGGG-CAAG 94428 |||| | || ||| | |||| ||| | |||| | | ||||| | |||| | || Sbjct 3775690 ACGTCTATGGTGAT-GAGTTT--AAGCAGCTGTACGAGCAGTACGAGAAGGAGGGCCGAG 3775746 Query 94429 GCC-AGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGA 94487 ||| | ||| || ||| |||||||||| | || || | ||| ||| || Sbjct 3775747 GCCGACGAA--CCATCCCTGCCCAGAAGCTGTGGTACCACATTCTCGACTGCCAGACCGA 3775804 Query 94488 GACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCA 94547 | | || | |||| ||| ||| ||||||||| |||| |||||||||||| || | Sbjct 3775805 GTCCGGCAACCCCTTCATGCTGTACAAGGACTCCTGCAACCGAAAGTCCAACCAGAAGAA 3775864 Query 94548 CCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGA 94607 |||||| || ||| || || |||||| |||||||| ||||| ||||||| || Sbjct 3775865 CCTCGGAACAATTAAGTCTTCTAACCTGTGCTGTGAGATTGTAGAGTACTCTTCTCCTGA 3775924 Query 94608 CGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGT---GCGAGATGC 94664 ||| | ||||| || ||||||| |||||| ||| ||||||| || ||||| Sbjct 3775925 TGAGGTCGCTGTCTGCAACCTGGCTTCCATCGCTCTGCCCACTTTTGTTACTCGAGA--- 3775981 Query 94665 CTACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGG--ATG 94722 | |||| | ||| ||| | ||| | || |||| || | || |||| || Sbjct 3775982 CGACAC--CAACTCGTTC-TACGACTTCAAGAAGCTGCACGACATTGC--CAAGGTCATT 3776036 Query 94723 GTCTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAAC 94782 || ||||| ||| | |||||| |||| |||||| ||||| ||||| |||| Sbjct 3776037 GTGCGAAACCTCAACGCTATCATCGACCGAAACTACTACCCGGTCCCCGAGGCCAAGAAG 3776096 Query 94783 TCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTG 94842 || ||| || || || ||||| | | || ||||||||| | || ||| | | || Sbjct 3776097 TCTAACATGCGACACCGACCCATTGCTCTGGGTGTCCAGGGTCTGGCCGACACCTTCATG 3776156 Query 94843 ATGATGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAA 94902 | || || || | || || | || || | | || | | || ||||| Sbjct 3776157 GCTCTACGACTCCCATTTGAGTCCGAGGAGGCCAAGAAGCTCAACATCCAGATCTTCGAG 3776216 Query 94903 AGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCA 94962 | ||| || |||| || | || || | | |||| |||||| | | Sbjct 3776217 ACCATCTACCACGGAGCTGTCGAAGCCTCTTACGAGATGGCTCTTGAGGACGGTG---CC 3776273 Query 94963 CACGAATCGTTCCGCGGATCGCCCTTGGAAC-AGGGCATTTTTCAGTTCGACCTCTGGGG 95021 |||| | |||| || || |||| | |||| | |||||||| |||||| Sbjct 3776274 TACGAGACCTTCCAGGGCTC-CCCTGCCTCCAAGGGTGACCTCCAGTTCGATCTCTGGAA 3776332 Query 95022 TGTGAAGCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAAACACGG 95081 |||| || || | |||| || ||||| | ||| || | | || || || Sbjct 3776333 CGTGACTCCTTCCGAGCTGTGGGAGTGGGACGATCTCAAGGCCAAGATCATGAAGACTGG 3776392 Query 95082 TGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGG 95141 | || |||| ||||| | || || ||||||||||| |||||||| | ||||| ||||| Sbjct 3776393 TATGCGAAACTCGCTGTTGGTCGCTCCCATGCCCACTGCCTCCACTTCCCAGATTCTTGG 3776452 Query 95142 CAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGG 95201 ||| |||| ||||| |||| ||| |||||| | ||| | || || || || || Sbjct 3776453 TTTCAATGAGTGCTTCGAGCCCTACACTTCCAACATTTACTCTCGACGAGTTCTTGCTGG 3776512 Query 95202 GGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTG---TGTG 95258 ||||||| | ||||| || || ||||||| || | || || |||| Sbjct 3776513 TGAATTCCAGATTGTCAACCCCTGGCTGCTCAAGGACCTG--GT-TGAGGTTGGCCTGTG 3776569 Query 95259 GGGTGACAAGGTCAAGAACC-AACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGC 95317 | || | | ||||||| || || | | | |||||| ||||| ||||||||||| Sbjct 3776570 GAACGAGACCATGAAGAACCGAATTGTTGC-TGACAACGGATCCGTGCAGAACATCCCCA 3776628 Query 95318 AAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGAT 95363 | || || |||| ||||||| || |||||||||||||||||||| Sbjct 3776629 ACATTCCCCAGGAAATCAAGGACCTGTACAAGACCGTGTGGGAGAT 3776674 >seq4 Length=3654803 Score = 134 bits (148), Expect = 1e-26 Identities = 482/741 (65%), Gaps = 22/741 (3%) Strand=Plus/Minus Query 93905 TGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACGAACAAGG 93964 ||||||| || || ||||| | || | || || ||||||||| || | | | Sbjct 398447 TGTTCAATGCAGGAACCCCCCAGGGCCAACTTTCGTCCTGTTTCCTGGTGGCCATGGCAG 398388 Query 93965 CCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATACG 94024 | ||||||||| ||| || | ||||| ||||| ||||| ||||| ||| || Sbjct 398387 CAGACTCCATCGACGGCATCTACGACACGCTCAAAACGTGTGCCCAAATCTCCAAAACCG 398328 Query 94025 CGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATC-CGCGGT 94083 | || || ||||| | | ||||| || | | |||| ||| | ||| | ||| Sbjct 398327 CCGGAGGTATCGGCTTGCATATCCACAACATTAGAGCCAAGGGAGCTCTCATTACTGGGT 398268 Query 94084 ACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGC 94143 ||| || | ||| ||| |||| ||||||||| | || ||||||||| | || || Sbjct 398267 CTCAA-GGAAGATCCTCCGGAATCGTTCCTATGCTCAGAGTGTTCAACAACACTGCTCGG 398209 Query 94144 TACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGG 94203 ||||||||||| || || | | || | || || || ||| | ||||||||| Sbjct 398208 TACGTGGACCAAGGAGGAAACAAACGTCCAGGAGCGTTTGCAGTGTATTTGGAGCCCTGG 398149 Query 94204 CACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGA-- 94261 || || ||| | || |||| | | ||||| || ||||| || ||| ||| | Sbjct 398148 CATGCAGACATTTTGGATTTCCTGAATCTGCGCAAAAACCATGGTGCCGA---GGAAAAT 398092 Query 94262 -GGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATG---AAACGCGTC 94317 | ||| | |||||||||||||| | |||||||| ||||| |||||| ||| ||| Sbjct 398091 CGAGCCCGTGACCTCTTCTACGCCTTATGGGTGCCTGACCTGTTTATGCGCAAA---GTC 398035 Query 94318 GAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCC--GGACTGTCCGACG 94375 ||||| | ||| |||||| ||||||| ||| | ||| || ||| |||| | Sbjct 398034 GAGAATGGCGAAAAGTGGTCTCTTTTCTGTCCCA--GAAAGGCCCCAGGTCTGGCCGATG 397977 Query 94376 TTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAGGA 94435 |||| ||| | || || | ||| | |||||| || |||| || Sbjct 397976 TTTGGGGAGAGGAATTCGACCGCAAGTACGAGGATTACGAGTCTAAGGGACTTTACAACT 397917 Query 94436 AGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACG-TACAGGTGGAGACGGGT 94494 | || || || | |||||| | || | |||| || | || || || Sbjct 397916 CGCAGATTGACGCCCAGGAGCTGTTCAAGGCCATTCT-GACGAGCCAAATTGAAACAGGA 397858 Query 94495 ACGCCCTACATCTTGTTCAAGGAC-TCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGG 94553 || | ||| ||| || ||| |||| ||||| || ||||||||| || ||||||| Sbjct 397857 GGACCTTTCATGCTGTATAAAGACAGCTGT-AACGCGAAATCCAACCAGAAGAACCTCGG 397799 Query 94554 GGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGAT 94613 ||||| || ||| |||| |||||||||||| |||| | ||||| |||||| | Sbjct 397798 CACAATCAAATCGTCCAATTTGTGTACCGAGATTGTCCAGTACTCGTCTCCTGACGAGGT 397739 Query 94614 TGCTGTGTGTAACCTGGGCTC 94634 |||||| || || |||| ||| Sbjct 397738 TGCTGTTTGCAATCTGGCCTC 397718 Score = 107 bits (118), Expect = 2e-18 Identities = 199/292 (68%), Gaps = 0/292 (0%) Strand=Plus/Minus Query 95073 CAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCA 95132 |||||||||| || |||| | || ||||| ||||||||||| || || ||||| |||| Sbjct 397285 CAAACACGGTATGCGAAACTCTCTACTTGTTGCCCCCATGCCTACAGCTTCCACATCGCA 397226 Query 95133 GATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGT 95192 ||| || ||| ||||||||| |||||||| | ||| |||||| | ||| | ||||| Sbjct 397225 GATTCTGGGCCACAACGAGTGTTTCGAACCGTACACGTCCAACATTTACCTTCGTCGGGT 397166 Query 95193 GCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGG 95252 | || || || || | ||| | ||| || || | || || | ||||| Sbjct 397165 CCAGGCTGGTGAGTTTCTCGTGGTGAACCAGTGGCTGATGAAAGATCTAATCAAACTGGG 397106 Query 95253 TGTGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACAT 95312 ||||| || || | || |||| | | | || ||||||||| |||||| ||| Sbjct 397105 CATGTGGACCGAGGAGATGAAAAACCGCATCATTCACGACAACGGCTCGATCCAGAGCAT 397046 Query 95313 CCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATC 95364 | | || ||||| || ||||| || | |||| || | |||||| ||| Sbjct 397045 CACCCAGATACCCGAACACATCCGAGCCGTGTACAGAACTGCGTGGGAAATC 396994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494723020662840