Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31] 29 sequences; 20,308,363 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq2 143 3e-29 seq6 113 4e-20 seq5 82.4 8e-11 >seq2 Length=3052417 Score = 143 bits (158), Expect = 3e-29 Identities = 331/493 (67%), Gaps = 13/493 (3%) Strand=Plus/Minus Query 52341 AAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCACGCTGGCCGAGCGC 52400 |||||||| | ||||| | ||||||||| ||| |||| | | ||||| Sbjct 507091 AAAAAGGCCGACTGGGCCCTCAAGTGGATCTCCGACGAAGAGTCCACCTTTGGAGAGCGA 507032 Query 52401 ATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTT 52460 | | ||||| ||| ||||||||| | || || |||||| || ||| ||||||| Sbjct 507031 CTCATTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCTTTCGCCTCCATCTTC 506972 Query 52461 TACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGC 52520 | | || | | ||| | ||||| ||||| || ||| ||||||| | || || || Sbjct 506971 TGGCTCAAGAAGCGAGGTCTCATGCCTGGCCTCACCTTCTCCAACGAGCTCATCTCCCGA 506912 Query 52521 GACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTGA-CCGAA-- 52577 ||||| || |||||||| |||||||| ||||| | | | | | || |||| Sbjct 506911 GACGAGGGTCTGCACACTGACTTTGCCTGCCTGCTTTTCTCGCACCTTGAGAACCGACCC 506852 Query 52578 --AAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGG 52635 ||| |||| | | || | | ||| || ||||| || | ||||| ||| Sbjct 506851 TCAAAGAAGATT-GTTGAGGA-CGT---CATTGTC---GAGGCTGTTGGCATCGAGCAGG 506800 Query 52636 AGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCG 52695 |||| |||| | ||| ||||| | ||||| || |||||||| || |||||| Sbjct 506799 AGTTCCTTACTGACGCTCTGCCCTGTGGTCTGCTTGGTATGAACGCCAAGCTGATGTGCC 506740 Query 52696 AGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCA 52755 |||||||||||||||| || || |||||| | || ||||| | | ||| | | Sbjct 506739 AGTACATCGAGTTTGTCGCTGACCGTCTGCTAGTTGCTCTCGGTAACTCCAAGGTGTATA 506680 Query 52756 ACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTT 52815 || | ||| || || || || ||| | ||||| || || | |||||||||||||||| Sbjct 506679 ACTCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTGGCCGGCAAGACCAACTTTT 506620 Query 52816 TCGAGAAGCGAGT 52828 ||||||||||||| Sbjct 506619 TCGAGAAGCGAGT 506607 >seq6 Length=3777980 Score = 113 bits (124), Expect = 4e-20 Identities = 166/234 (71%), Gaps = 1/234 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | |||| ||| | ||| | | |||||||| || |||||||||||| Sbjct 1245210 CCTCCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAA 1245151 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||||||| || ||||||| |||| || ||||| |||||||| || Sbjct 1245150 AGAGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGG 1245091 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | |||||| | ||||||||| Sbjct 1245090 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCCACC 1245031 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCA-TGGCTTA 138620 |||| || | || || ||||| || || || ||||| || |||| ||| ||| Sbjct 1245030 TCGAGGGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCACTGGGTTA 1244977 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | |||| || | ||| | | |||||||| || ||||||||||| Sbjct 1363901 CCACCTCGAAGTCGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 1363842 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||||||| || ||||||| |||| || ||||| |||||||| || Sbjct 1363841 AGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 1363782 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | |||||||| ||||||||| Sbjct 1363781 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 1363722 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || ||||| || || || || |||||||||||||| Sbjct 1363721 TCGAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCAT 1363675 >seq5 Length=4047401 Score = 82.4 bits (90), Expect = 8e-11 Identities = 130/183 (71%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | || | ||| | ||| | | |||||||| |||||||||||||| | Sbjct 2184061 CCACCTCGGAGTCGGAGAACGAGATGGAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAC 2184002 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||||| || ||||||| | || || ||||| ||||||||||| Sbjct 2184001 AGGGTTCGGCCATCCTCGAGCTGCTTACCGGCGAAAATCAGTCGCTGCTGGTCCGGAGGA 2183942 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| | || | || | ||| || | |||||||| ||||| | Sbjct 2183941 ATTCCCTCCTTGTC-CTGAATCTTGGACTTGACGTTG-TCGATGGTGTCGGAGGACTCGA 2183884 Query 138566 CCT 138568 ||| Sbjct 2183883 CCT 2183881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262220104880