Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31]
29 sequences; 20,308,363 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq2 158 1e-33
seq6 111 1e-19
seq5 84.2 2e-11
>seq2
Length=3052417
Score = 158 bits (174), Expect = 1e-33
Identities = 357/531 (67%), Gaps = 17/531 (3%)
Strand=Plus/Minus
Query 47046 CTTTTGAACGGTTTCGAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAG 47105
|| || |||| |||||| ||| |||||| | | ||||||||| |||||| | |||
Sbjct 507127 CTGTTCAACGCCATCGAGACCATCCCCTGCATCAAGAAAAAGGCCGACTGGGCCCTCAAG 507068
Query 47106 TACATTGAAAACGAAAACGTCACTCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAG 47165
| || ||||| | ||| | | || || | || || || ||| |||||||
Sbjct 507067 TGGATCTCCGACGAAGAGTCCACCTTTGGAGAGCGACTCATTGCCTTTGCCGCCGTCGAG 507008
Query 47166 GGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAAAGGAGTTATG 47225
||| |||||||||| ||| || || | || || | | || | ||| | |||
Sbjct 507007 GGCATCTTCTTCTCCGGCTCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATG 506948
Query 47226 CCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTT 47285
|| |||||||| || ||||||||| ||||| ||||||| || |||||||| |||||
Sbjct 506947 CCTGGCCTCACCTTCTCCAACGAGCTCATCTCCCGAGACGAGGGTCTGCACACTGACTTT 506888
Query 47286 GCCTGTCTC---TACTACAACACT-AGAGTCGATCA--AAAGTTGGACGTGCCCACCGTC 47339
||||| || | || || | ||| ||| | |||| | || |
Sbjct 506887 GCCTGCCTGCTTTTCTCGCACCTTGAGAACCGACCCTCAAAGAAGATTGT--------TG 506836
Query 47340 AGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCC 47399
|| ||| | ||| ||| || || | ||| ||| |||||| | | || |||||||||
Sbjct 506835 AG-GACGTCATTGTCGAGGCTGTTGGCATCGAGCAGGAGTTCCTTACTGACGCTCTGCCC 506777
Query 47400 GAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGAC 47459
| | | || |||||||| || ||||| | |||||||||| |||||||| |||
Sbjct 506776 TGTGGTCTGCTTGGTATGAACGCCAAGCTGATGTGCCAGTACATCGAGTTTGTCGCTGAC 506717
Query 47460 CGCCTGCTCGTTCAGCTAAAGTATC-CCAAGATTTACCACACCGAGAATCCATTCGAGTT 47518
|| ||||| ||| || ||| | ||||| | || || || || || ||||| ||
Sbjct 506716 CGTCTGCTAGTTGCTCTCG-GTAACTCCAAGGTGTATAACTCCACCAACCCCTTCGACTT 506658
Query 47519 TATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGT 47569
||| | ||||| || || | |||||||||||||||||||||||||| ||
Sbjct 506657 CATGGAGAACATCTCTCTGGCCGGCAAGACCAACTTTTTCGAGAAGCGAGT 506607
>seq6
Length=3777980
Score = 111 bits (122), Expect = 1e-19
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | ||||| || | ||| | || ||||| || || || ||||| ||
Sbjct 1363901 CCACCTCGAAGTCGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 1363842
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || || || ||||| || || ||| |||| | ||||||||| || || ||
Sbjct 1363841 AGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 1363782
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| |||||||||||| ||| || ||||| ||||| ||| |||||| | | ||| ||
Sbjct 1363781 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGT-CGATGGTGTCGGAAGACTCCAC 1363723
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||| ||| | || || ||||| || || || ||||||||||||||
Sbjct 1363722 CTCGAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCAT 1363675
Score = 95.1 bits (104), Expect = 1e-14
Identities = 166/238 (70%), Gaps = 3/238 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|| || || | ||||| || | ||| | || ||||| || || || ||||| |||
Sbjct 1245210 CCTCCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAA 1245151
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || || || ||||| || || ||| |||| | ||||||||| || || ||
Sbjct 1245150 AGAGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGG 1245091
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| |||||||||||| ||| || ||||| |||| || | |||||| | ||| ||
Sbjct 1245090 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TCAATGGTGTCAGAGGACTCCAC 1245032
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCA-TGGCTTATTT 127122
|||| ||| | || ||||| || || || || ||||| || |||| ||| ||| ||
Sbjct 1245031 CTCGAGGGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCACTGGGTTAGTT 1244974
Score = 87.8 bits (96), Expect = 2e-12
Identities = 233/346 (67%), Gaps = 10/346 (3%)
Strand=Plus/Minus
Query 147219 CAGCCCGAGACCTCCGCCCAGA-TTCGAAATCAAAGCGGACTCGTGCAAGGTCTTGTAGA 147277
||| |||| ||| ||| | ||| || ||||||| ||| | | | ||| | |||||
Sbjct 3775358 CAGACCGATACCGCCGGC-AGACTTGGAAATCAGAGCACAGGTTTTGAGGGTATCGTAGA 3775300
Query 147278 TGCCGTCGATGCTGTCTTCCTTGATGCATTGC--AGGAAACACGAACACATTTGGGGACG 147335
||||||||||| ||| ||||| ||| ||| ||||||||||| |||| || || |
Sbjct 3775299 TGCCGTCGATGGAGTCGTCCTTCATG--TTGACAAGGAAACACGACGACATCTGAGGCTG 3775242
Query 147336 ACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGTGAACGTGC-CCAGACTCATCA 147394
|| || || | || |||||| ||||| ||||| || | | || |||
Sbjct 3775241 GGGAGTTCCGGCGTTGTAGAGAGTGGGGGAAGCGTGAGTGAA-GTACTTCTGAGACATAT 3775183
Query 147395 ATTGATACGTTTCAATGGCGCTCATAACGTCATCGCCGTGAATGGCCAGGGCGACGCGCA 147454
| | || || |||||||| | || || |||||||| || | | | ||| ||||
Sbjct 3775182 AGTTGTAGGTCTCAATGGCCCGGGCAATGTTGTCGCCGTGGATACCGACAGAGACTCGCA 3775123
Query 147455 TGAGCATGTGCTGGGGTCGTTCCGCAATCACGTCATTGACTTTTAATAGATATCCATTGG 147514
||| ||| || |||||||| || |||| | | |||||| | || ||| | | |
Sbjct 3775122 TGATCATCTGTTGGGGTCGCTCGGCAACAGCACCGTTGACTCGCAGCAGGTATGC-TCGC 3775064
Query 147515 T-CAGAGTTTTGAAACCAAAGTACTTGTAGTCGTAGTCCCTGTTGT 147559
| ||| || ||||| |||||||| |||||| | |||| | || ||
Sbjct 3775063 TCCAGGGTCTTGAAGCCAAAGTAGTTGTAGGTGAAGTCTCGGTCGT 3775018
>seq5
Length=4047401
Score = 84.2 bits (92), Expect = 2e-11
Identities = 121/168 (72%), Gaps = 2/168 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | ||| | || | ||| | || ||||| || ||||| ||||| || |
Sbjct 2184061 CCACCTCGGAGTCGGAGAACGAGATGGAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAC 2184002
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || ||| || ||||| || || ||| | |||| ||||||||| || |||||
Sbjct 2184001 AGGGTTCGGCCATCCTCGAGCTGCTTACCGGCGAAAATCAGTCGCTGCTGGTCCGGAGGA 2183942
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTC 127053
|| |||||||||||| || || ||||| |||| |||| ||||||
Sbjct 2183941 ATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTG-TCGATGGTGTC 2183895
Score = 84.2 bits (92), Expect = 2e-11
Identities = 112/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017
||| || ||||| || ||||| | |||| ||||||||| || || || || ||||||||
Sbjct 2184218 ATCCTCGAGCTGCTTACCAGCAAAAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTT 2184159
Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077
|||| || || ||||| | || | ||||| | | ||| || |||| || |
Sbjct 2184158 GTCCTGAATCTTGGACTTGACATTATCAATAGTGTCAGAAGACTCAACCTCGAGAGTGAT 2184099
Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| || || |||||||| || || |||||||||||
Sbjct 2184098 GGTCTTTCCAGTCAGAGTCTTGACGAAAATCTGCAT 2184063
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475500627630960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |