Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31] 29 sequences; 20,308,363 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq2 158 1e-33 seq6 111 1e-19 seq5 84.2 2e-11 >seq2 Length=3052417 Score = 158 bits (174), Expect = 1e-33 Identities = 357/531 (67%), Gaps = 17/531 (3%) Strand=Plus/Minus Query 47046 CTTTTGAACGGTTTCGAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAG 47105 || || |||| |||||| ||| |||||| | | ||||||||| |||||| | ||| Sbjct 507127 CTGTTCAACGCCATCGAGACCATCCCCTGCATCAAGAAAAAGGCCGACTGGGCCCTCAAG 507068 Query 47106 TACATTGAAAACGAAAACGTCACTCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAG 47165 | || ||||| | ||| | | || || | || || || ||| ||||||| Sbjct 507067 TGGATCTCCGACGAAGAGTCCACCTTTGGAGAGCGACTCATTGCCTTTGCCGCCGTCGAG 507008 Query 47166 GGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAAAGGAGTTATG 47225 ||| |||||||||| ||| || || | || || | | || | ||| | ||| Sbjct 507007 GGCATCTTCTTCTCCGGCTCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATG 506948 Query 47226 CCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTT 47285 || |||||||| || ||||||||| ||||| ||||||| || |||||||| ||||| Sbjct 506947 CCTGGCCTCACCTTCTCCAACGAGCTCATCTCCCGAGACGAGGGTCTGCACACTGACTTT 506888 Query 47286 GCCTGTCTC---TACTACAACACT-AGAGTCGATCA--AAAGTTGGACGTGCCCACCGTC 47339 ||||| || | || || | ||| ||| | |||| | || | Sbjct 506887 GCCTGCCTGCTTTTCTCGCACCTTGAGAACCGACCCTCAAAGAAGATTGT--------TG 506836 Query 47340 AGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCC 47399 || ||| | ||| ||| || || | ||| ||| |||||| | | || ||||||||| Sbjct 506835 AG-GACGTCATTGTCGAGGCTGTTGGCATCGAGCAGGAGTTCCTTACTGACGCTCTGCCC 506777 Query 47400 GAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGAC 47459 | | | || |||||||| || ||||| | |||||||||| |||||||| ||| Sbjct 506776 TGTGGTCTGCTTGGTATGAACGCCAAGCTGATGTGCCAGTACATCGAGTTTGTCGCTGAC 506717 Query 47460 CGCCTGCTCGTTCAGCTAAAGTATC-CCAAGATTTACCACACCGAGAATCCATTCGAGTT 47518 || ||||| ||| || ||| | ||||| | || || || || || ||||| || Sbjct 506716 CGTCTGCTAGTTGCTCTCG-GTAACTCCAAGGTGTATAACTCCACCAACCCCTTCGACTT 506658 Query 47519 TATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGT 47569 ||| | ||||| || || | |||||||||||||||||||||||||| || Sbjct 506657 CATGGAGAACATCTCTCTGGCCGGCAAGACCAACTTTTTCGAGAAGCGAGT 506607 >seq6 Length=3777980 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||| || | ||| | || ||||| || || || ||||| || Sbjct 1363901 CCACCTCGAAGTCGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 1363842 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| || || ||| |||| | ||||||||| || || || Sbjct 1363841 AGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 1363782 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| || ||||| ||||| ||| |||||| | | ||| || Sbjct 1363781 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGT-CGATGGTGTCGGAAGACTCCAC 1363723 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | || || ||||| || || || |||||||||||||| Sbjct 1363722 CTCGAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCAT 1363675 Score = 95.1 bits (104), Expect = 1e-14 Identities = 166/238 (70%), Gaps = 3/238 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || || | ||||| || | ||| | || ||||| || || || ||||| ||| Sbjct 1245210 CCTCCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAA 1245151 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| || || ||| |||| | ||||||||| || || || Sbjct 1245150 AGAGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGG 1245091 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| || ||||| |||| || | |||||| | ||| || Sbjct 1245090 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TCAATGGTGTCAGAGGACTCCAC 1245032 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCA-TGGCTTATTT 127122 |||| ||| | || ||||| || || || || ||||| || |||| ||| ||| || Sbjct 1245031 CTCGAGGGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCACTGGGTTAGTT 1244974 Score = 87.8 bits (96), Expect = 2e-12 Identities = 233/346 (67%), Gaps = 10/346 (3%) Strand=Plus/Minus Query 147219 CAGCCCGAGACCTCCGCCCAGA-TTCGAAATCAAAGCGGACTCGTGCAAGGTCTTGTAGA 147277 ||| |||| ||| ||| | ||| || ||||||| ||| | | | ||| | ||||| Sbjct 3775358 CAGACCGATACCGCCGGC-AGACTTGGAAATCAGAGCACAGGTTTTGAGGGTATCGTAGA 3775300 Query 147278 TGCCGTCGATGCTGTCTTCCTTGATGCATTGC--AGGAAACACGAACACATTTGGGGACG 147335 ||||||||||| ||| ||||| ||| ||| ||||||||||| |||| || || | Sbjct 3775299 TGCCGTCGATGGAGTCGTCCTTCATG--TTGACAAGGAAACACGACGACATCTGAGGCTG 3775242 Query 147336 ACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGTGAACGTGC-CCAGACTCATCA 147394 || || || | || |||||| ||||| ||||| || | | || ||| Sbjct 3775241 GGGAGTTCCGGCGTTGTAGAGAGTGGGGGAAGCGTGAGTGAA-GTACTTCTGAGACATAT 3775183 Query 147395 ATTGATACGTTTCAATGGCGCTCATAACGTCATCGCCGTGAATGGCCAGGGCGACGCGCA 147454 | | || || |||||||| | || || |||||||| || | | | ||| |||| Sbjct 3775182 AGTTGTAGGTCTCAATGGCCCGGGCAATGTTGTCGCCGTGGATACCGACAGAGACTCGCA 3775123 Query 147455 TGAGCATGTGCTGGGGTCGTTCCGCAATCACGTCATTGACTTTTAATAGATATCCATTGG 147514 ||| ||| || |||||||| || |||| | | |||||| | || ||| | | | Sbjct 3775122 TGATCATCTGTTGGGGTCGCTCGGCAACAGCACCGTTGACTCGCAGCAGGTATGC-TCGC 3775064 Query 147515 T-CAGAGTTTTGAAACCAAAGTACTTGTAGTCGTAGTCCCTGTTGT 147559 | ||| || ||||| |||||||| |||||| | |||| | || || Sbjct 3775063 TCCAGGGTCTTGAAGCCAAAGTAGTTGTAGGTGAAGTCTCGGTCGT 3775018 >seq5 Length=4047401 Score = 84.2 bits (92), Expect = 2e-11 Identities = 121/168 (72%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||| | || | ||| | || ||||| || ||||| ||||| || | Sbjct 2184061 CCACCTCGGAGTCGGAGAACGAGATGGAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAC 2184002 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || ||||| || || ||| | |||| ||||||||| || ||||| Sbjct 2184001 AGGGTTCGGCCATCCTCGAGCTGCTTACCGGCGAAAATCAGTCGCTGCTGGTCCGGAGGA 2183942 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTC 127053 || |||||||||||| || || ||||| |||| |||| |||||| Sbjct 2183941 ATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTG-TCGATGGTGTC 2183895 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| || ||||| || ||||| | |||| ||||||||| || || || || |||||||| Sbjct 2184218 ATCCTCGAGCTGCTTACCAGCAAAAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTT 2184159 Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 |||| || || ||||| | || | ||||| | | ||| || |||| || | Sbjct 2184158 GTCCTGAATCTTGGACTTGACATTATCAATAGTGTCAGAAGACTCAACCTCGAGAGTGAT 2184099 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || |||||||| || || ||||||||||| Sbjct 2184098 GGTCTTTCCAGTCAGAGTCTTGACGAAAATCTGCAT 2184063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500627630960