Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31]
29 sequences; 20,308,363 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq2 250 4e-61
seq6 179 6e-40
seq4 132 8e-26
>seq2
Length=3052417
Score = 250 bits (276), Expect = 4e-61
Identities = 580/865 (67%), Gaps = 17/865 (2%)
Strand=Plus/Plus
Query 159628 CTTCTTGTATTGCGACACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGA 159687
||||| ||| | ||||| |||||||||||||||||||||||| ||| || ||
Sbjct 506591 CTTCTGGTAGTCGGACACTCGCTTCTCGAAAAAGTTGGTCTTGCCGGCCAGAGAGATGTT 506650
Query 159688 TTCCATGAACCCGAATGGGTTCTTCACGTGATAGCGCTTCGGAAAT-CCGAGAGCCGCCA 159746
|||||||| |||| ||||| | || ||| ||| ||| | |||||||| | |
Sbjct 506651 CTCCATGAAGTCGAAGGGGTTGGTGGAGTTATACACCTT-GGAGTTACCGAGAGCAACTA 506709
Query 159747 GCAACCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCA 159806
||| | ||| || ||||| |||||||| |||||| ||| ||| || || ||||
Sbjct 506710 GCAGACGGTCAGCGACAAACTCGATGTACTGGCACATCAGCTTGGCGTTCATACCAAGCA 506769
Query 159807 GCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAA 159866
| | | ||| || || || | || ||||||| ||| || | || || ||| ||||
Sbjct 506770 GACCACAGGGCAGAGCGTCAGTAAGGAACTCCTGCTCGATGCCAACAGCCTCG---ACAA 506826
Query 159867 TC---TGCGAGACACG-TTCGTACCCCGGCT-TGCCCAAAATGTGGTCCTTAAACAGGAG 159921
| | | ||| ||| | | | | | ||| ||| | || || ||
Sbjct 506827 TGACGTCCTCAACAATCTTCTTTGAGGGTCGGTTCTCAA-----GGTGCGAGAAAAGCAG 506881
Query 159922 GCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAG 159981
||| |||||||| |||||| |||||||| || ||||||| ||||||||| | | ||||
Sbjct 506882 GCAGGCAAAGTCAGTGTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTGAG 506941
Query 159982 GCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAA 160041
||| ||||||| || ||| |||||||| || |||| || |||| ||| || ||
Sbjct 506942 GCCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCGGAGAAGAA 507001
Query 160042 GATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATG 160101
||| ||||| ||||| ||||| || | ||| | ||| ||||| | || | |||
Sbjct 507002 GATGCCCTCGACGGCGGCAAAGGCAATGAGTCGCTCTCCAAAGGTGGACTCTTCGTCGGA 507061
Query 160102 GGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTT 160161
| ||||| | |||||| || ||||| || |||||| || ||| ||||| ||||||
Sbjct 507062 GATCCACTTGAGGGCCCAGTCGGCCTTTTTCTTGATGCAGGGGATGGTCTCGATGGCGTT 507121
Query 160162 AAACAA-TCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACA 160220
|||| | || | |||| || |||||||| || | |||||| ||||||
Sbjct 507122 GAACAGGTAGGTTC-GCTCTTTGGGGTCCTTGATGTATGTGTCGATCAGCAGCGAGTAGG 507180
Query 160221 TTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGAT 160280
| || | ||| | || || || ||||| ||| |||||| | | ||||| |
Sbjct 507181 TCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCCTCGGGGG 507240
Query 160281 ACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCG 160340
||||||||| | ||| | | | |||| || | ||||| | ||||||| ||| |
Sbjct 507241 CCTGCACCTCGCCGGAGAATCGCTCAACCAGGTTCTCGTTAACGATACCGTCGGAGGCAG 507300
Query 160341 CAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCC 160400
||||||| || | ||||| |||||||| | ||| || ||||||||||| || ||||
Sbjct 507301 CAAAGAATGCGAGAACGTGGGAGATGAAGAACCGCTCATCGTTGTTGAGTCTGTTCTCCC 507360
Query 160401 AGTGTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAG 160460
||| || ||| | | | ||||| ||| || || |||| | |||| ||
Sbjct 507361 AGTCACCCATGTCCTTTCCAAGATCAATCTCCTCAGCTGTCCAGAAAGAGGCCTCGGCCT 507420
Query 160461 TTTTGTACATGGCCCAGATGGCGTG 160485
| |||||||| |||||| ||||
Sbjct 507421 TCTTGTACATCTGCCAGATTTCGTG 507445
>seq6
Length=3777980
Score = 179 bits (198), Expect = 6e-40
Identities = 334/484 (69%), Gaps = 10/484 (2%)
Strand=Plus/Minus
Query 203849 GTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTCTTTAGG 203908
|||||||| |||| | | |||| | || ||| ||| |||||||| || ||||| ||
Sbjct 3776869 GTGAACTGGATGGGGGCAGCAGCAGCCATGGTTCGCAGGTAGTACATACCTGTCTTGAGA 3776810
Query 203909 CCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATG 203968
||||||| ||| ||||| | ||||||||| | || |||| || | | ||||| |||
Sbjct 3776809 CCCTTCTTCCAGCCGTAGAAGTGCATGGAGGTGAGCTTGCCCATGGTAGGGTCCTTGATG 3776750
Query 203969 TGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATA 204028
|||||||| || ||||| ||||| ||||| || | || || |||||||| | ||
Sbjct 3776749 TGAATGTTGAGGGACTGAGACTGGTCAATGAAGGGGGATCGGTCAGCGGCCATCTCAATG 3776690
Query 204029 ATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTGTTGAGGCACA 204088
|| |||||| |||||||||||||| |||||| ||| ||| || | | || || |
Sbjct 3776689 ATTCGCTTCTGAGAAATCTCCCACACGGTCTTGTACAGGTCCTTGATTTCCTGGGGAATG 3776630
Query 204089 TCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTC---TCATCCTCGTCTCCTC 204144
| | | || ||| | || |||||||| || | | || || || | ||||| |
Sbjct 3776629 T-TGGGGATGTTCTGCACGGATCCGTTGTCAGCAACAATTCGGTTCTTCATGGTCTCGT- 3776572
Query 204145 CCCCCACATGCCCAACCT-GATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAAAGT 204203
||||| | ||||||| | ||| ||| | ||| |||||||| ||||| || |
Sbjct 3776571 --TCCACA-GGCCAACCTCAACCAGGTCCTTGAGCAGCCAGGGGTTGACAATCTGGAATT 3776515
Query 204204 CTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGTTGT 204263
| || | || || | ||| | | | | |||| ||| | || ||||| ||| |||
Sbjct 3776514 CACCAGCAAGAACTCGTCGAGAGTAAATGTTGGAAGTGTAGGGCTCGAAGCACTCATTGA 3776455
Query 204264 TGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGCA 204323
|| | |||||| | ||| ||| |||||||||||||| | | ||| ||||| ||||
Sbjct 3776454 AACCAAGAATCTGGGAAGTGGAGGCAGTGGGCATGGGAGCGACCAACAGCGAGTTTCGCA 3776395
Query 204324 CACC 204327
|||
Sbjct 3776394 TACC 3776391
>seq4
Length=3654803
Score = 132 bits (146), Expect = 8e-26
Identities = 512/787 (65%), Gaps = 28/787 (4%)
Strand=Plus/Plus
Query 203836 CGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACAT 203895
||| |||||||| || ||||| || || | | |||||| |||||||||| |||||
Sbjct 396787 CGTTTTGTCCACAGTAAACTGGATAGCATGAGCAGCAGGCGGAGTTCTCAGATAATACAT 396846
Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGT- 203954
||| || || || || || ||| || | | ||||||| | | ||| | || |
Sbjct 396847 GCCTGTTTTAAGTCCAGCCTTCCAGCCATGGAAATGCATGGCTGTGATTTTTC-CATGCG 396905
Query 203955 TGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTG 204014
| || | |||| |||||| || |||||| |||||| ||| | |||||||| | |
Sbjct 396906 TAATCTCAGGCATGAAAATGTTAAGCGACTGGGATTGGTCAATGTAGGGCGCCCGTGCAG 396965
Query 204015 CGGCCATAT---TGATAAT--GGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTC 204069
| ||||||| ||||| | || | | || || |||||| | || || ||||| |
Sbjct 396966 CAGCCATATCAATGATATTACGGGCCT-TG----ATTTCCCACGCAGTTCTGTACACGGC 397020
Query 204070 TCTGGTGTGTTGAGGCACATCTTCCC-ACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGT 204127
|| | |||||| || | ||| | | ||| ||||||||||||||| || |
Sbjct 397021 TCGGATGTGTTCGGGTA--TCTGGGTGATGCTCTGGATCGAGCCGTTGTCGTGAATGATG 397078
Query 204128 CTCATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGG 204187
| | || ||||||| ||||||||||| |||| || || || ||| ||
Sbjct 397079 CGGTTTTTCATCTCCTCGGTCCACATGCCCAGTTTGATTAGATCTTTCATCAGCCACTGG 397138
Query 204188 TTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGT 204247
|| | | |||| || || | | | |||| || | | | |||| ||| | |||
Sbjct 397139 TTCACCACGAGAAACTCACCAGCCTGGACCCGACGAAGGTAAATGTTGGACGTGTACGGT 397198
Query 204248 TCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGG 204307
||||| |||||||| ||| | |||||| | ||| || || |||||||| || |
Sbjct 397199 TCGAAACACTCGTTGTGGCCCAGAATCTGCGATGTGGAAGCTGTAGGCATGGGGGCAACA 397258
Query 204308 AGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTC---G 204364
|| || ||||| |||| ||||| ||| || | || ||| || | ||| || |
Sbjct 397259 AGTAGAGAGTTTCGCATACCGTGTTTGGCGAGCTTGGTCTTGAGGCGAGCCCAATCCCAG 397318
Query 204365 TGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGG 204424
| ||| || ||| || | ||||| || ||||| | | || |||||| | ||
Sbjct 397319 AG-ATCCGAC--GGTGTCTTGTTCCACAGATCAAACTGCAGCTTTCCCTGACTGGCGGGA 397375
Query 204425 CTGCCCTTGTACGTCGGATAAGG--CTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCA 204482
||||| | || ||| ||| || | || || | ||||||| | || || |
Sbjct 397376 CTGCCTTCATAGGTCTCATAGGGTCCCAAT--TCAGCGGCCAGCTCGATAGATGCCTCAC 397433
Query 204483 TGGCGTGATAGTACATGGTCTCAAAGATCTGAACGTTTAA-TCTGGCGGCCTCCGTTCCG 204541
||| || ||| ||||| |||||||| |||| || || ||| || ||||| | | |
Sbjct 397434 AGGCTGCATGGTAAATGGTTTCAAAGATGAGAACATTCAACTCT-GCAGCCTCGGGGCTG 397492
Query 204542 TCAAACGCCAGACCCAGCATGGCAAACACGTCCGCCAAGCCCTGCACTCCGATTCCCAAC 204601
|| || | || | ||| | ||||||||| |||| |||||| || || | | | |
Sbjct 397493 TCGAAGGGCATTCGTAGCTTCATAAACACGTCAGCCAGGCCCTGAACACCCACAGCAATC 397552
Query 204602 GGTCTGT 204608
|||||||
Sbjct 397553 GGTCTGT 397559
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795154911756240
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