Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31] 29 sequences; 20,308,363 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq2 250 4e-61 seq6 179 6e-40 seq4 132 8e-26 >seq2 Length=3052417 Score = 250 bits (276), Expect = 4e-61 Identities = 580/865 (67%), Gaps = 17/865 (2%) Strand=Plus/Plus Query 159628 CTTCTTGTATTGCGACACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGA 159687 ||||| ||| | ||||| |||||||||||||||||||||||| ||| || || Sbjct 506591 CTTCTGGTAGTCGGACACTCGCTTCTCGAAAAAGTTGGTCTTGCCGGCCAGAGAGATGTT 506650 Query 159688 TTCCATGAACCCGAATGGGTTCTTCACGTGATAGCGCTTCGGAAAT-CCGAGAGCCGCCA 159746 |||||||| |||| ||||| | || ||| ||| ||| | |||||||| | | Sbjct 506651 CTCCATGAAGTCGAAGGGGTTGGTGGAGTTATACACCTT-GGAGTTACCGAGAGCAACTA 506709 Query 159747 GCAACCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCA 159806 ||| | ||| || ||||| |||||||| |||||| ||| ||| || || |||| Sbjct 506710 GCAGACGGTCAGCGACAAACTCGATGTACTGGCACATCAGCTTGGCGTTCATACCAAGCA 506769 Query 159807 GCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAA 159866 | | | ||| || || || | || ||||||| ||| || | || || ||| |||| Sbjct 506770 GACCACAGGGCAGAGCGTCAGTAAGGAACTCCTGCTCGATGCCAACAGCCTCG---ACAA 506826 Query 159867 TC---TGCGAGACACG-TTCGTACCCCGGCT-TGCCCAAAATGTGGTCCTTAAACAGGAG 159921 | | | ||| ||| | | | | | ||| ||| | || || || Sbjct 506827 TGACGTCCTCAACAATCTTCTTTGAGGGTCGGTTCTCAA-----GGTGCGAGAAAAGCAG 506881 Query 159922 GCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAG 159981 ||| |||||||| |||||| |||||||| || ||||||| ||||||||| | | |||| Sbjct 506882 GCAGGCAAAGTCAGTGTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTGAG 506941 Query 159982 GCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAA 160041 ||| ||||||| || ||| |||||||| || |||| || |||| ||| || || Sbjct 506942 GCCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCGGAGAAGAA 507001 Query 160042 GATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATG 160101 ||| ||||| ||||| ||||| || | ||| | ||| ||||| | || | ||| Sbjct 507002 GATGCCCTCGACGGCGGCAAAGGCAATGAGTCGCTCTCCAAAGGTGGACTCTTCGTCGGA 507061 Query 160102 GGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTT 160161 | ||||| | |||||| || ||||| || |||||| || ||| ||||| |||||| Sbjct 507062 GATCCACTTGAGGGCCCAGTCGGCCTTTTTCTTGATGCAGGGGATGGTCTCGATGGCGTT 507121 Query 160162 AAACAA-TCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACA 160220 |||| | || | |||| || |||||||| || | |||||| |||||| Sbjct 507122 GAACAGGTAGGTTC-GCTCTTTGGGGTCCTTGATGTATGTGTCGATCAGCAGCGAGTAGG 507180 Query 160221 TTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGAT 160280 | || | ||| | || || || ||||| ||| |||||| | | ||||| | Sbjct 507181 TCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCCTCGGGGG 507240 Query 160281 ACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCG 160340 ||||||||| | ||| | | | |||| || | ||||| | ||||||| ||| | Sbjct 507241 CCTGCACCTCGCCGGAGAATCGCTCAACCAGGTTCTCGTTAACGATACCGTCGGAGGCAG 507300 Query 160341 CAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCC 160400 ||||||| || | ||||| |||||||| | ||| || ||||||||||| || |||| Sbjct 507301 CAAAGAATGCGAGAACGTGGGAGATGAAGAACCGCTCATCGTTGTTGAGTCTGTTCTCCC 507360 Query 160401 AGTGTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAG 160460 ||| || ||| | | | ||||| ||| || || |||| | |||| || Sbjct 507361 AGTCACCCATGTCCTTTCCAAGATCAATCTCCTCAGCTGTCCAGAAAGAGGCCTCGGCCT 507420 Query 160461 TTTTGTACATGGCCCAGATGGCGTG 160485 | |||||||| |||||| |||| Sbjct 507421 TCTTGTACATCTGCCAGATTTCGTG 507445 >seq6 Length=3777980 Score = 179 bits (198), Expect = 6e-40 Identities = 334/484 (69%), Gaps = 10/484 (2%) Strand=Plus/Minus Query 203849 GTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTCTTTAGG 203908 |||||||| |||| | | |||| | || ||| ||| |||||||| || ||||| || Sbjct 3776869 GTGAACTGGATGGGGGCAGCAGCAGCCATGGTTCGCAGGTAGTACATACCTGTCTTGAGA 3776810 Query 203909 CCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATG 203968 ||||||| ||| ||||| | ||||||||| | || |||| || | | ||||| ||| Sbjct 3776809 CCCTTCTTCCAGCCGTAGAAGTGCATGGAGGTGAGCTTGCCCATGGTAGGGTCCTTGATG 3776750 Query 203969 TGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATA 204028 |||||||| || ||||| ||||| ||||| || | || || |||||||| | || Sbjct 3776749 TGAATGTTGAGGGACTGAGACTGGTCAATGAAGGGGGATCGGTCAGCGGCCATCTCAATG 3776690 Query 204029 ATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTGTTGAGGCACA 204088 || |||||| |||||||||||||| |||||| ||| ||| || | | || || | Sbjct 3776689 ATTCGCTTCTGAGAAATCTCCCACACGGTCTTGTACAGGTCCTTGATTTCCTGGGGAATG 3776630 Query 204089 TCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTC---TCATCCTCGTCTCCTC 204144 | | | || ||| | || |||||||| || | | || || || | ||||| | Sbjct 3776629 T-TGGGGATGTTCTGCACGGATCCGTTGTCAGCAACAATTCGGTTCTTCATGGTCTCGT- 3776572 Query 204145 CCCCCACATGCCCAACCT-GATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAAAGT 204203 ||||| | ||||||| | ||| ||| | ||| |||||||| ||||| || | Sbjct 3776571 --TCCACA-GGCCAACCTCAACCAGGTCCTTGAGCAGCCAGGGGTTGACAATCTGGAATT 3776515 Query 204204 CTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGTTGT 204263 | || | || || | ||| | | | | |||| ||| | || ||||| ||| ||| Sbjct 3776514 CACCAGCAAGAACTCGTCGAGAGTAAATGTTGGAAGTGTAGGGCTCGAAGCACTCATTGA 3776455 Query 204264 TGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGCA 204323 || | |||||| | ||| ||| |||||||||||||| | | ||| ||||| |||| Sbjct 3776454 AACCAAGAATCTGGGAAGTGGAGGCAGTGGGCATGGGAGCGACCAACAGCGAGTTTCGCA 3776395 Query 204324 CACC 204327 ||| Sbjct 3776394 TACC 3776391 >seq4 Length=3654803 Score = 132 bits (146), Expect = 8e-26 Identities = 512/787 (65%), Gaps = 28/787 (4%) Strand=Plus/Plus Query 203836 CGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACAT 203895 ||| |||||||| || ||||| || || | | |||||| |||||||||| ||||| Sbjct 396787 CGTTTTGTCCACAGTAAACTGGATAGCATGAGCAGCAGGCGGAGTTCTCAGATAATACAT 396846 Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGT- 203954 ||| || || || || || ||| || | | ||||||| | | ||| | || | Sbjct 396847 GCCTGTTTTAAGTCCAGCCTTCCAGCCATGGAAATGCATGGCTGTGATTTTTC-CATGCG 396905 Query 203955 TGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTG 204014 | || | |||| |||||| || |||||| |||||| ||| | |||||||| | | Sbjct 396906 TAATCTCAGGCATGAAAATGTTAAGCGACTGGGATTGGTCAATGTAGGGCGCCCGTGCAG 396965 Query 204015 CGGCCATAT---TGATAAT--GGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTC 204069 | ||||||| ||||| | || | | || || |||||| | || || ||||| | Sbjct 396966 CAGCCATATCAATGATATTACGGGCCT-TG----ATTTCCCACGCAGTTCTGTACACGGC 397020 Query 204070 TCTGGTGTGTTGAGGCACATCTTCCC-ACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGT 204127 || | |||||| || | ||| | | ||| ||||||||||||||| || | Sbjct 397021 TCGGATGTGTTCGGGTA--TCTGGGTGATGCTCTGGATCGAGCCGTTGTCGTGAATGATG 397078 Query 204128 CTCATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGG 204187 | | || ||||||| ||||||||||| |||| || || || ||| || Sbjct 397079 CGGTTTTTCATCTCCTCGGTCCACATGCCCAGTTTGATTAGATCTTTCATCAGCCACTGG 397138 Query 204188 TTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGT 204247 || | | |||| || || | | | |||| || | | | |||| ||| | ||| Sbjct 397139 TTCACCACGAGAAACTCACCAGCCTGGACCCGACGAAGGTAAATGTTGGACGTGTACGGT 397198 Query 204248 TCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGG 204307 ||||| |||||||| ||| | |||||| | ||| || || |||||||| || | Sbjct 397199 TCGAAACACTCGTTGTGGCCCAGAATCTGCGATGTGGAAGCTGTAGGCATGGGGGCAACA 397258 Query 204308 AGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTC---G 204364 || || ||||| |||| ||||| ||| || | || ||| || | ||| || | Sbjct 397259 AGTAGAGAGTTTCGCATACCGTGTTTGGCGAGCTTGGTCTTGAGGCGAGCCCAATCCCAG 397318 Query 204365 TGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGG 204424 | ||| || ||| || | ||||| || ||||| | | || |||||| | || Sbjct 397319 AG-ATCCGAC--GGTGTCTTGTTCCACAGATCAAACTGCAGCTTTCCCTGACTGGCGGGA 397375 Query 204425 CTGCCCTTGTACGTCGGATAAGG--CTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCA 204482 ||||| | || ||| ||| || | || || | ||||||| | || || | Sbjct 397376 CTGCCTTCATAGGTCTCATAGGGTCCCAAT--TCAGCGGCCAGCTCGATAGATGCCTCAC 397433 Query 204483 TGGCGTGATAGTACATGGTCTCAAAGATCTGAACGTTTAA-TCTGGCGGCCTCCGTTCCG 204541 ||| || ||| ||||| |||||||| |||| || || ||| || ||||| | | | Sbjct 397434 AGGCTGCATGGTAAATGGTTTCAAAGATGAGAACATTCAACTCT-GCAGCCTCGGGGCTG 397492 Query 204542 TCAAACGCCAGACCCAGCATGGCAAACACGTCCGCCAAGCCCTGCACTCCGATTCCCAAC 204601 || || | || | ||| | ||||||||| |||| |||||| || || | | | | Sbjct 397493 TCGAAGGGCATTCGTAGCTTCATAAACACGTCAGCCAGGCCCTGAACACCCACAGCAATC 397552 Query 204602 GGTCTGT 204608 ||||||| Sbjct 397553 GGTCTGT 397559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795154911756240