Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31]
29 sequences; 20,308,363 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq6 156 1e-32
seq5 125 2e-23
>seq6
Length=3777980
Score = 156 bits (172), Expect = 1e-32
Identities = 166/219 (76%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467
|||||||| |||||| || |||||||| |||||||| |||| ||||||||||| | ||
Sbjct 1363896 TCGAAGTCGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGT 1363837
Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527
| || || || |||||||| ||||||||||| || |||||||||||||| ||||||
Sbjct 1363836 TCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCC 1363777
Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587
|| ||||| ||||| ||| ||| |||| |||||| | | || || || |
Sbjct 1363776 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAG 1363717
Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| |||||||| || || || || |||||||| ||
Sbjct 1363716 GGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTG 1363678
Score = 134 bits (148), Expect = 3e-26
Identities = 161/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467
||| |||| ||| || || |||||||| |||||||| |||| ||||||||| | | |||
Sbjct 1245205 TCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGT 1245146
Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527
| || || || |||||||| ||||||||||| || |||||||||||||| |||||
Sbjct 1245145 TCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGGATTCC 1245086
Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587
|| ||||| ||||| ||| ||| || | |||||| | | || || || |
Sbjct 1245085 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCCACCTCGAG 1245026
Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| || || || || || ||||| |||||
Sbjct 1245025 GGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTG 1244987
>seq5
Length=4047401
Score = 125 bits (138), Expect = 2e-23
Identities = 125/162 (77%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467
||| |||| || || || |||||||| |||||||| || | ||||||||||| || ||
Sbjct 2184056 TCGGAGTCGGAGAACGAGATGGAGAGTGGACTCCTTCTGAATGTTGTAGTCAGACAGGGT 2183997
Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527
| ||||| || |||||||| |||||||| || || ||||||||||||||| ||||||
Sbjct 2183996 TCGGCCATCCTCGAGCTGCTTACCGGCGAAAATCAGTCGCTGCTGGTCCGGAGGAATTCC 2183937
Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTC 199569
|| ||||||||||| ||| ||| |||| ||||||
Sbjct 2183936 CTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTC 2183895
Score = 105 bits (116), Expect = 2e-17
Identities = 106/138 (77%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467
||| |||| || || || |||||||| |||||||| |||| ||||||||| | | |||
Sbjct 2184458 TCGGAGTCGAAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGT 2184399
Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527
| ||||| || |||||||| || || || || || |||||||||||||| ||||||
Sbjct 2184398 TCGGCCATCCTCGAGCTGCTTACCAGCAAAAATCAGTCGCTGCTGGTCCGGGGGAATTCC 2184339
Query 199528 TTCTCGCTCCTGAATCTT 199545
|| |||||||||||
Sbjct 2184338 CTCCTTGTCCTGAATCTT 2184321
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178921161956943
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |