Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31]
29 sequences; 20,308,363 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq6 136 4e-27
seq5 87.8 2e-12
>seq6
Length=3777980
Score = 136 bits (150), Expect = 4e-27
Identities = 168/227 (74%), Gaps = 2/227 (1%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
||||||| | |||| || ||||| | || |||||| ||||| |||||||||||
Sbjct 1245210 CCTCCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAA 1245151
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
||||| || |||| ||||||||||| |||||||| || | ||||||||||| | ||
Sbjct 1245150 AGAGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGG 1245091
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCG-TGTCGCTCGATTCCAC 46545
| | |||||||||| |||||| ||||| ||| | || | |||| || |||||
Sbjct 1245090 ATTCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCAATGGTGTCAGAGGACTCCAC 1245032
Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCA 46592
|| | ||||| || ||||| || || || || |||||||||||||
Sbjct 1245031 CTCGAGGGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 1244985
Score = 120 bits (132), Expect = 3e-22
Identities = 159/218 (73%), Gaps = 2/218 (1%)
Strand=Plus/Minus
Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438
|||| || ||||| | || |||||| ||||| |||||||| || || || || ||
Sbjct 1363889 CGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCGGCCG 1363830
Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498
|| ||||||||||| |||||||| || | ||||||||||| | || | | |||||||
Sbjct 1363829 TCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTG 1363770
Query 46499 TCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
||| |||||| ||||| ||| | | | |||||| || ||||| || | |||||
Sbjct 1363769 TCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGAT 1363711
Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTT 46595
|| || || || || || || ||||| || |||||||
Sbjct 1363710 AGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATTT 1363673
>seq5
Length=4047401
Score = 87.8 bits (96), Expect = 2e-12
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| ||||| || | || ||||||||||| || || ||
Sbjct 2184428 CTCCTTCTGGATGTTGTAGTCGGAAAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCAAA 2184369
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTT 46509
|||| ||||||||||| | || | | |||||||||| |||||
Sbjct 2184368 AATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGAATCTT 2184321
Score = 84.2 bits (92), Expect = 2e-11
Identities = 88/116 (76%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| || || |||||||| || || || || | || ||||||||||| ||||||||
Sbjct 2184026 CTCCTTCTGAATGTTGTAGTCAGACAGGGTTCGGCCATCCTCGAGCTGCTTACCGGCGAA 2183967
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517
|||| ||||||||||| | || | | |||||||||| ||||| |||||
Sbjct 2183966 AATCAGTCGCTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGAATCTTGGACTTGA 2183911
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565238195101080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |