Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31]
29 sequences; 20,308,363 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq2 325 4e-84
seq6 116 4e-21
seq5 84.2 2e-11
>seq2
Length=3052417
Score = 325 bits (360), Expect = 4e-84
Identities = 606/879 (69%), Gaps = 17/879 (2%)
Strand=Plus/Plus
Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684
||||| ||||| || || || || ||| || ||| | ||| || || |||||||||
Sbjct 506613 TTCTCGAAAAAGTTGGTCTTGCCGGCCAGAGAGATGTTCTCCATGAAGTCGAAGGGGTTG 506672
Query 132685 GCTGTGTTGTAGTGCTTGGTG---CCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741
| | ||| || ||||| | |||| || | || ||||| | ||| || || |||
Sbjct 506673 GTGGAGTTATACACCTTGGAGTTACCGAG-AG--CAACTAGCAGACGGTCAGCGACAAAC 506729
Query 132742 TCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGCAGACGCACCGG-CAGCGCTT 132799
|||||||| || |||| | || || || | || ||||||| ||| || ||| || |
Sbjct 506730 TCGATGTACTGGCACATCAGCTTGGCG-TTCATACCAAGCAGAC-CACAGGGCAGAGCGT 506787
Query 132800 CGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCG 132859
| || || || ||||||||| | || || ||| | || ||| ||| | |
Sbjct 506788 CAGTAAGGAACTCCTGCTCGATGCCAACAGCCTCGACAATGACGTCCTCAACAATCTTCT 506847
Query 132860 CGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCT 132919
|| || | | | | ||| ||| | || ||| |||||||| |||| ||||
Sbjct 506848 TTGAGGGTCGGTTCTCAAGGTGCGAGAAAAGCAGGCAGGCAAAGTCAGTGTGCAGACCCT 506907
Query 132920 CGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGA 132979
|||| | ||| ||||| |||||| ||| || | ||| |||||||| || || || ||||
Sbjct 506908 CGTCTCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCAGGCATGAGACCTCGCTTCTTGA 506967
Query 132980 GCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCA 133039
|||| || |||| ||||||| ||| || ||||||| |||||||||||| || || || |
Sbjct 506968 GCCAGAAGATGGAGGCGAAAGAGCCGGAGAAGAAGATGCCCTCGACGGCGGCAAAGGCAA 507027
Query 133040 CCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCT 133099
|| ||||| || || |||| |||| | || |||||| || ||||| |||||||
Sbjct 507028 TGAGTCGCTCTCCAAAGGTGGACTCTTCGTCGGAGATCCACTTGAGGGCCCAGTCGGCCT 507087
Query 133100 TTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTT--CTCTTCCGA 133157
||| |||| ||| || || || ||||||||||| ||| | | || || ||||| |
Sbjct 507088 TTTTCTTGATGCAGGGGATGGTCTCGATGGCGTTGAAC--AGGTAGGTTCGCTCTTTGGG 507145
Query 133158 GGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGC 133217
| | ||| |||||||| || ||| || | || ||||| | |||||||||
Sbjct 507146 GTCCTTGATGTATGTGTCGATCAGCAGCGAGTAGGTCTCGGAGTGGATGTTCTCCATCAT 507205
Query 133218 GATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTC 133277
||| || |||||||| |||||| |||||| ||||||| || | ||| |||||
Sbjct 507206 GATCTGGAAGCCGTAGAAGCACTTGGCCTCGGGGGCCTGCACCTCGCCGGAGAATCGCTC 507265
Query 133278 GACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGAT 133337
||||| || ||||| ||||| |||||| ||| || || || || || ||||| |||
Sbjct 507266 AACCAGGTTCTCGTTAACGATACCGTCGGAGGCAGCAAAGAATGCGAGAACGTGGGAGAT 507325
Query 133338 GAAATGGCGCTCGTTGTCGTTCA---AGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTC 133394
||| ||||| | || ||| | | ||||||||| | | ||||||| || ||
Sbjct 507326 GAAGAACCGCTCATCGTTGTTGAGTCTGTTCTCCCAGTCACCCATGTCCTTTCCAAGATC 507385
Query 133395 CACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGA 133454
| |||||| | ||||| || || |||||||| || |||||||| ||| || ||
Sbjct 507386 AATCTCCTCAGCTGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATCTGCCAGATTTCGTG 507445
Query 133455 ATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTC 133493
|| || ||||| || | ||||||||| || |||| ||
Sbjct 507446 GTACTGGATGGGGAAGAGCACAAACCGTCGATGGTTCTC 507484
>seq6
Length=3777980
Score = 116 bits (128), Expect = 4e-21
Identities = 158/218 (72%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 38242 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCA 38301
||||||| || || || || || || || || || || |||||| |||| || ||| |
Sbjct 1363673 AAATGCAGATTTTTGTCAAGACCCTTACCGGTAAGACTATCACCCTCGAGGTGGAGTCTT 1363732
Query 38302 CCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360
|||||| | | | |||| | || || |||| ||||| |||||||||||| | |||
Sbjct 1363733 CCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGAC 1363791
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
|| ||||| || || | ||| || || ||||| || |||| || ||||| ||||||
Sbjct 1363792 CAGCAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACCCTTTCTGACTAC 1363851
Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
|||||||| ||||| | || || ||| | || |||||
Sbjct 1363852 AACATCCAGAAGGAGTCCACTCTCCATCTCGTCCTGCG 1363889
Score = 114 bits (126), Expect = 1e-20
Identities = 156/215 (73%), Gaps = 2/215 (1%)
Strand=Plus/Plus
Query 38245 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCG 38304
||||||| || || || || || || ||||| || |||||| |||| || ||| || | |
Sbjct 1244985 TGCAAATCTTTGTCAAGACCCTTACTGGCAAGACTATCACCCTCGAGGTGGAGTCCTCTG 1245044
Query 38305 ACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
||| | | | |||| | || || |||| ||||| |||||||| ||| | |||||
Sbjct 1245045 ACACCATTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCGGACCAG 1245103
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || || | ||| || || ||||| || |||| || || || ||||||||||
Sbjct 1245104 CAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACTCTTTCCGACTACAAC 1245163
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||||| ||||| | || || ||| | || |||||
Sbjct 1245164 ATCCAGAAGGAGTCCACTCTCCATCTCGTTCTGCG 1245198
>seq5
Length=4047401
Score = 84.2 bits (92), Expect = 2e-11
Identities = 100/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396
||||| |||||||||||| | ||||| ||||| || |||| || || || ||||| ||
Sbjct 2184330 GACAAGGAGGGAATTCCCCCGGACCAGCAGCGACTGATTTTTGCTGGTAAGCAGCTCGAG 2184389
Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456
|| | || || || ||||||||||||||| ||||| | || || ||| | || ||
Sbjct 2184390 GATGGCCGAACTCTTTCCGACTACAACATCCAGAAGGAGTCCACTCTCCATCTCGTTCTT 2184449
Query 38457 CGTTTGAGAGGCGGCC 38472
|| | |||| ||||
Sbjct 2184450 CGACTCCGAGGTGGCC 2184465
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500172618687360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |