Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31] 29 sequences; 20,308,363 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2 325 4e-84 seq6 116 4e-21 seq5 84.2 2e-11 >seq2 Length=3052417 Score = 325 bits (360), Expect = 4e-84 Identities = 606/879 (69%), Gaps = 17/879 (2%) Strand=Plus/Plus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 ||||| ||||| || || || || ||| || ||| | ||| || || ||||||||| Sbjct 506613 TTCTCGAAAAAGTTGGTCTTGCCGGCCAGAGAGATGTTCTCCATGAAGTCGAAGGGGTTG 506672 Query 132685 GCTGTGTTGTAGTGCTTGGTG---CCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741 | | ||| || ||||| | |||| || | || ||||| | ||| || || ||| Sbjct 506673 GTGGAGTTATACACCTTGGAGTTACCGAG-AG--CAACTAGCAGACGGTCAGCGACAAAC 506729 Query 132742 TCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGCAGACGCACCGG-CAGCGCTT 132799 |||||||| || |||| | || || || | || ||||||| ||| || ||| || | Sbjct 506730 TCGATGTACTGGCACATCAGCTTGGCG-TTCATACCAAGCAGAC-CACAGGGCAGAGCGT 506787 Query 132800 CGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCG 132859 | || || || ||||||||| | || || ||| | || ||| ||| | | Sbjct 506788 CAGTAAGGAACTCCTGCTCGATGCCAACAGCCTCGACAATGACGTCCTCAACAATCTTCT 506847 Query 132860 CGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCT 132919 || || | | | | ||| ||| | || ||| |||||||| |||| |||| Sbjct 506848 TTGAGGGTCGGTTCTCAAGGTGCGAGAAAAGCAGGCAGGCAAAGTCAGTGTGCAGACCCT 506907 Query 132920 CGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGA 132979 |||| | ||| ||||| |||||| ||| || | ||| |||||||| || || || |||| Sbjct 506908 CGTCTCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCAGGCATGAGACCTCGCTTCTTGA 506967 Query 132980 GCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCA 133039 |||| || |||| ||||||| ||| || ||||||| |||||||||||| || || || | Sbjct 506968 GCCAGAAGATGGAGGCGAAAGAGCCGGAGAAGAAGATGCCCTCGACGGCGGCAAAGGCAA 507027 Query 133040 CCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCT 133099 || ||||| || || |||| |||| | || |||||| || ||||| ||||||| Sbjct 507028 TGAGTCGCTCTCCAAAGGTGGACTCTTCGTCGGAGATCCACTTGAGGGCCCAGTCGGCCT 507087 Query 133100 TTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTT--CTCTTCCGA 133157 ||| |||| ||| || || || ||||||||||| ||| | | || || ||||| | Sbjct 507088 TTTTCTTGATGCAGGGGATGGTCTCGATGGCGTTGAAC--AGGTAGGTTCGCTCTTTGGG 507145 Query 133158 GGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGC 133217 | | ||| |||||||| || ||| || | || ||||| | ||||||||| Sbjct 507146 GTCCTTGATGTATGTGTCGATCAGCAGCGAGTAGGTCTCGGAGTGGATGTTCTCCATCAT 507205 Query 133218 GATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTC 133277 ||| || |||||||| |||||| |||||| ||||||| || | ||| ||||| Sbjct 507206 GATCTGGAAGCCGTAGAAGCACTTGGCCTCGGGGGCCTGCACCTCGCCGGAGAATCGCTC 507265 Query 133278 GACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGAT 133337 ||||| || ||||| ||||| |||||| ||| || || || || || ||||| ||| Sbjct 507266 AACCAGGTTCTCGTTAACGATACCGTCGGAGGCAGCAAAGAATGCGAGAACGTGGGAGAT 507325 Query 133338 GAAATGGCGCTCGTTGTCGTTCA---AGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTC 133394 ||| ||||| | || ||| | | ||||||||| | | ||||||| || || Sbjct 507326 GAAGAACCGCTCATCGTTGTTGAGTCTGTTCTCCCAGTCACCCATGTCCTTTCCAAGATC 507385 Query 133395 CACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGA 133454 | |||||| | ||||| || || |||||||| || |||||||| ||| || || Sbjct 507386 AATCTCCTCAGCTGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATCTGCCAGATTTCGTG 507445 Query 133455 ATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTC 133493 || || ||||| || | ||||||||| || |||| || Sbjct 507446 GTACTGGATGGGGAAGAGCACAAACCGTCGATGGTTCTC 507484 >seq6 Length=3777980 Score = 116 bits (128), Expect = 4e-21 Identities = 158/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 38242 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCA 38301 ||||||| || || || || || || || || || || |||||| |||| || ||| | Sbjct 1363673 AAATGCAGATTTTTGTCAAGACCCTTACCGGTAAGACTATCACCCTCGAGGTGGAGTCTT 1363732 Query 38302 CCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 |||||| | | | |||| | || || |||| ||||| |||||||||||| | ||| Sbjct 1363733 CCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGAC 1363791 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || || | ||| || || ||||| || |||| || ||||| |||||| Sbjct 1363792 CAGCAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACCCTTTCTGACTAC 1363851 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||| ||||| | || || ||| | || ||||| Sbjct 1363852 AACATCCAGAAGGAGTCCACTCTCCATCTCGTCCTGCG 1363889 Score = 114 bits (126), Expect = 1e-20 Identities = 156/215 (73%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 38245 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCG 38304 ||||||| || || || || || || ||||| || |||||| |||| || ||| || | | Sbjct 1244985 TGCAAATCTTTGTCAAGACCCTTACTGGCAAGACTATCACCCTCGAGGTGGAGTCCTCTG 1245044 Query 38305 ACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 ||| | | | |||| | || || |||| ||||| |||||||| ||| | ||||| Sbjct 1245045 ACACCATTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCGGACCAG 1245103 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| || || ||||| || |||| || || || |||||||||| Sbjct 1245104 CAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACTCTTTCCGACTACAAC 1245163 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || || ||| | || ||||| Sbjct 1245164 ATCCAGAAGGAGTCCACTCTCCATCTCGTTCTGCG 1245198 >seq5 Length=4047401 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| |||||||||||| | ||||| ||||| || |||| || || || ||||| || Sbjct 2184330 GACAAGGAGGGAATTCCCCCGGACCAGCAGCGACTGATTTTTGCTGGTAAGCAGCTCGAG 2184389 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 || | || || || ||||||||||||||| ||||| | || || ||| | || || Sbjct 2184390 GATGGCCGAACTCTTTCCGACTACAACATCCAGAAGGAGTCCACTCTCCATCTCGTTCTT 2184449 Query 38457 CGTTTGAGAGGCGGCC 38472 || | |||| |||| Sbjct 2184450 CGACTCCGAGGTGGCC 2184465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172618687360