Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31]
29 sequences; 20,308,363 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq6 138 9e-27
seq5 86.0 5e-11
>seq6
Length=3777980
Score = 138 bits (152), Expect = 9e-27
Identities = 715/1127 (63%), Gaps = 14/1127 (1%)
Strand=Plus/Plus
Query 517265 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 517324
|| || || ||||| ||||| || | || || ||||| ||||| || ||||| ||||
Sbjct 3100150 ACGTTGAGGATACCGTTGGCGTCGACGTCGAAGGTGACCTCAATCTGGGGGACACCTCGG 3100209
Query 517325 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAAT 517384
||||||| || || || || | || | || || | || ||||| || ||
Sbjct 3100210 GGAGCAGGGGGAATGCCGGACAGCTCGAACTTACCAAGGATGTTGTTATCCTTGGTCTGG 3100269
Query 517385 TTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTA 517444
||| ||||||||||| | || || || | | || || || | ||||| |
Sbjct 3100270 GCTCGCTCACCCTCGAAGACCTGAATCAGGACACCGGGCTGGTTGTCAGCGTAAGTGGAG 3100329
Query 517445 AATACTCT-GGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAAT 517503
|| ||| ||| || || || || || | ||||| || | ||||||||||
Sbjct 3100330 AAGG-TCTCGGACTTCTTGGTGGGGATGGTGGAGTTTCGGGGGATGAGCTTGGTCATAAC 3100388
Query 517504 ACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTG 517563
|||||| || || || | ||||||||| ||||||| ||||| | |||| || || ||
Sbjct 3100389 ACCACCGGCAGTCTCAATACCAAGAGAGAGAGGAGCAACATCGAGAAGGAGAAGATCCTG 3100448
Query 517564 AAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAAC 517623
| | ||| | || || ||||| || || | |||||||| || |||||
Sbjct 3100449 AGTGGAGGAAGAAGTATCTCCGGAGAGGATAGCGGCCTGGACGGCAGCACCGTAGGCAAC 3100508
Query 517624 AGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAG 517683
||| ||||| || || | | | || | | ||||| ||||| || | || | |||
Sbjct 3100509 AGCCTCATCGGGGTTGATGGATCGGTTGGGCTCCTTACCGTTGAAGAAGTCAGAGACAAG 3100568
Query 517684 TTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTG 517742
| ||| ||||| || || |||| || || || || | || || || | || |
Sbjct 3100569 CT-TCTGGACCTTGGGGATTCGAGTGGAACCACCGACAAGAACGATCTCGTTGACGGCGG 3100627
Query 517743 ATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACA 517802
| || || | || || || | || || || ||||| || ||| ||| || |
Sbjct 3100628 ACTTGTCGATCTTGGAGTCTCGGAGGACCTTCTCGACGGGCTCGAGAGTACCTCGGAAGA 3100687
Query 517803 AGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCC 517860
|| ||| || || |||||| |||| || || || | || || ||||| ||
Sbjct 3100688 GATCCTGACAGAGCTCCTCGAATCGGGCTCGGGT--GATGGAGGTGTAGAAGTCAATACC 3100745
Query 517861 TTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGC 517920
||| | | ||| || | || || | || || | |||||||| || | || || ||
Sbjct 3100746 CTCGTAGAGAGAGTCGATCTCGATGGAGGTCTGGGCGGAAGAAGACAGGGTTCGCTTGGC 3100805
Query 517921 ACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAATCTGTTTT 517980
|| ||||| || || | | || ||| | ||| |||| ||| | | || | ||
Sbjct 3100806 TCGCTCACAAGCGGTTCGCAATCGTCGGAGAGCTC--GCTGGTTGGTGGAGATATCCTTC 3100863
Query 517981 ATAT--TTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCA 518038
| | || | |||||| || | || | | || || || ||||||||||| |||
Sbjct 3100864 TTGTGCTTACGCTTGAACTCCTGGACGAAGTGGTTGACGAGTCGGTTATCAAAATCCTCA 3100923
Query 518039 CCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGAC 518098
|| || | | || | || | || || | || | ||||| ||||| || | |||
Sbjct 3100924 CCACCAAGATGGGTGTCACCAGCGGTGGCCTTGACCTCGAAAATACCATCCTCGATAGAG 3100983
Query 518099 AAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTG 518158
| || | ||||| ||||| ||||| | ||| || || || || || ||
Sbjct 3100984 AGGAGGGAGACATCGAAAGTTCCTCCACCAAGATCGAAGATGAGAACGTTTCGCTCACCA 3101043
Query 518159 TCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTC 518218
| | || || || ||||| || |||| ||||| || || || || || || |||| |
Sbjct 3101044 GCCTCCTTCTTGTCCAGACCGTAGGCAATGGCAGCTGCGGTAGGCTCGTTGATGATTCGC 3101103
Query 518219 AAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTA 518278
|| || ||||| ||||| || || || || || || |||| || || |||||
Sbjct 3101104 TGGACGTTGAGACCGGCAATAAGACCAGCGTCCTTGGTAGCCTGTCGCTGGGAGTCGTTG 3101163
Query 518279 AAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCT-TGC 518337
|| || ||||| ||||| || ||||||||||| || | | ||| | | ||| || ||
Sbjct 3101164 AAGTAAGCAGGGACAGTGATGACGGCATCAGTGACCTTTCCACCGAGGT-AGCCCTCAGC 3101222
Query 518338 CGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGG 518384
|| | ||||| ||| | | ||||| || || || | || ||||
Sbjct 3101223 GGTCTCCTTCATCTTAGTGAGGATCATGGAAGAGATCTCCTCGGGGG 3101269
>seq5
Length=4047401
Score = 86.0 bits (94), Expect = 5e-11
Identities = 140/201 (70%), Gaps = 3/201 (1%)
Strand=Plus/Plus
Query 518095 AGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTC 518154
||||| ||||| ||||| |||||| ||||| | ||| | | || | | | | ||
Sbjct 1638780 AGACAGAAGAGAAACATCGAAGGTTCCTCCACCAAGATCGTAGACAACAATCTGCTTCTC 1638839
Query 518155 TTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 518214
||| | | | | || || || || |||| || ||||| || || || |||| |||
Sbjct 1638840 ---GTCATCGGTGTGGTCCAGGCCGTAGGCAATGGCGGCAGCGGTGGGCTCGTTAACAAT 1638896
Query 518215 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 518274
|| || ||| || ||||||||||| | || ||||| || ||||| |||| || | |||
Sbjct 1638897 TCGCAGAACGTTGAGACCAGCAATGATACCGGCATCCTTGGTGGCCTGTCGCTGGGCATC 1638956
Query 518275 GTTAAAATATGCAGGAACAGT 518295
||| || || ||||| || ||
Sbjct 1638957 GTTGAAGTAGGCAGGGACGGT 1638977
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3780820960924474
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |