Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31] 29 sequences; 20,308,363 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq6 138 9e-27 seq5 86.0 5e-11 >seq6 Length=3777980 Score = 138 bits (152), Expect = 9e-27 Identities = 715/1127 (63%), Gaps = 14/1127 (1%) Strand=Plus/Plus Query 517265 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 517324 || || || ||||| ||||| || | || || ||||| ||||| || ||||| |||| Sbjct 3100150 ACGTTGAGGATACCGTTGGCGTCGACGTCGAAGGTGACCTCAATCTGGGGGACACCTCGG 3100209 Query 517325 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAAT 517384 ||||||| || || || || | || | || || | || ||||| || || Sbjct 3100210 GGAGCAGGGGGAATGCCGGACAGCTCGAACTTACCAAGGATGTTGTTATCCTTGGTCTGG 3100269 Query 517385 TTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTA 517444 ||| ||||||||||| | || || || | | || || || | ||||| | Sbjct 3100270 GCTCGCTCACCCTCGAAGACCTGAATCAGGACACCGGGCTGGTTGTCAGCGTAAGTGGAG 3100329 Query 517445 AATACTCT-GGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAAT 517503 || ||| ||| || || || || || | ||||| || | |||||||||| Sbjct 3100330 AAGG-TCTCGGACTTCTTGGTGGGGATGGTGGAGTTTCGGGGGATGAGCTTGGTCATAAC 3100388 Query 517504 ACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTG 517563 |||||| || || || | ||||||||| ||||||| ||||| | |||| || || || Sbjct 3100389 ACCACCGGCAGTCTCAATACCAAGAGAGAGAGGAGCAACATCGAGAAGGAGAAGATCCTG 3100448 Query 517564 AAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAAC 517623 | | ||| | || || ||||| || || | |||||||| || ||||| Sbjct 3100449 AGTGGAGGAAGAAGTATCTCCGGAGAGGATAGCGGCCTGGACGGCAGCACCGTAGGCAAC 3100508 Query 517624 AGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAG 517683 ||| ||||| || || | | | || | | ||||| ||||| || | || | ||| Sbjct 3100509 AGCCTCATCGGGGTTGATGGATCGGTTGGGCTCCTTACCGTTGAAGAAGTCAGAGACAAG 3100568 Query 517684 TTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTG 517742 | ||| ||||| || || |||| || || || || | || || || | || | Sbjct 3100569 CT-TCTGGACCTTGGGGATTCGAGTGGAACCACCGACAAGAACGATCTCGTTGACGGCGG 3100627 Query 517743 ATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACA 517802 | || || | || || || | || || || ||||| || ||| ||| || | Sbjct 3100628 ACTTGTCGATCTTGGAGTCTCGGAGGACCTTCTCGACGGGCTCGAGAGTACCTCGGAAGA 3100687 Query 517803 AGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCC 517860 || ||| || || |||||| |||| || || || | || || ||||| || Sbjct 3100688 GATCCTGACAGAGCTCCTCGAATCGGGCTCGGGT--GATGGAGGTGTAGAAGTCAATACC 3100745 Query 517861 TTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGC 517920 ||| | | ||| || | || || | || || | |||||||| || | || || || Sbjct 3100746 CTCGTAGAGAGAGTCGATCTCGATGGAGGTCTGGGCGGAAGAAGACAGGGTTCGCTTGGC 3100805 Query 517921 ACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAATCTGTTTT 517980 || ||||| || || | | || ||| | ||| |||| ||| | | || | || Sbjct 3100806 TCGCTCACAAGCGGTTCGCAATCGTCGGAGAGCTC--GCTGGTTGGTGGAGATATCCTTC 3100863 Query 517981 ATAT--TTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCA 518038 | | || | |||||| || | || | | || || || ||||||||||| ||| Sbjct 3100864 TTGTGCTTACGCTTGAACTCCTGGACGAAGTGGTTGACGAGTCGGTTATCAAAATCCTCA 3100923 Query 518039 CCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGAC 518098 || || | | || | || | || || | || | ||||| ||||| || | ||| Sbjct 3100924 CCACCAAGATGGGTGTCACCAGCGGTGGCCTTGACCTCGAAAATACCATCCTCGATAGAG 3100983 Query 518099 AAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTG 518158 | || | ||||| ||||| ||||| | ||| || || || || || || Sbjct 3100984 AGGAGGGAGACATCGAAAGTTCCTCCACCAAGATCGAAGATGAGAACGTTTCGCTCACCA 3101043 Query 518159 TCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTC 518218 | | || || || ||||| || |||| ||||| || || || || || || |||| | Sbjct 3101044 GCCTCCTTCTTGTCCAGACCGTAGGCAATGGCAGCTGCGGTAGGCTCGTTGATGATTCGC 3101103 Query 518219 AAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTA 518278 || || ||||| ||||| || || || || || || |||| || || ||||| Sbjct 3101104 TGGACGTTGAGACCGGCAATAAGACCAGCGTCCTTGGTAGCCTGTCGCTGGGAGTCGTTG 3101163 Query 518279 AAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCT-TGC 518337 || || ||||| ||||| || ||||||||||| || | | ||| | | ||| || || Sbjct 3101164 AAGTAAGCAGGGACAGTGATGACGGCATCAGTGACCTTTCCACCGAGGT-AGCCCTCAGC 3101222 Query 518338 CGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGG 518384 || | ||||| ||| | | ||||| || || || | || |||| Sbjct 3101223 GGTCTCCTTCATCTTAGTGAGGATCATGGAAGAGATCTCCTCGGGGG 3101269 >seq5 Length=4047401 Score = 86.0 bits (94), Expect = 5e-11 Identities = 140/201 (70%), Gaps = 3/201 (1%) Strand=Plus/Plus Query 518095 AGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTC 518154 ||||| ||||| ||||| |||||| ||||| | ||| | | || | | | | || Sbjct 1638780 AGACAGAAGAGAAACATCGAAGGTTCCTCCACCAAGATCGTAGACAACAATCTGCTTCTC 1638839 Query 518155 TTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 518214 ||| | | | | || || || || |||| || ||||| || || || |||| ||| Sbjct 1638840 ---GTCATCGGTGTGGTCCAGGCCGTAGGCAATGGCGGCAGCGGTGGGCTCGTTAACAAT 1638896 Query 518215 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 518274 || || ||| || ||||||||||| | || ||||| || ||||| |||| || | ||| Sbjct 1638897 TCGCAGAACGTTGAGACCAGCAATGATACCGGCATCCTTGGTGGCCTGTCGCTGGGCATC 1638956 Query 518275 GTTAAAATATGCAGGAACAGT 518295 ||| || || ||||| || || Sbjct 1638957 GTTGAAGTAGGCAGGGACGGT 1638977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780820960924474