Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31]
29 sequences; 20,308,363 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq2 145 9e-30
seq4 105 8e-18
>seq2
Length=3052417
Score = 145 bits (160), Expect = 9e-30
Identities = 348/520 (67%), Gaps = 16/520 (3%)
Strand=Plus/Plus
Query 116995 ACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATAAAGTCAAAT 117054
||||||||||| || ||||||||||| || | || ||||| ||||| ||||| ||
Sbjct 506607 ACTCGCTTCTCGAAAAAGTTGGTCTTGCCGGCCAGAGAGATGTTCTCCATGAAGTCGAAG 506666
Query 117055 GGATTCTTCGCGTTCCAAA--TGGGTGGCACCC----CAACTTGTTTGAGGAGACGATCC 117108
|| || | | ||| | | | || | ||| ||||| || ||||| ||
Sbjct 506667 GGGTTGGTGGAGTTATACACCTTGGAGTTACCGAGAGCAACT------AGCAGACGGTCA 506720
Query 117109 GACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACATGGG 117168
| ||| |||| ||||||| | ||||| || | ||||||||| | ||| ||| ||
Sbjct 506721 GCGACAAACTCGATGTACTGGCACATCAGCTTGGCGTTCATACCAAGCAGACCACAGGGC 506780
Query 117169 AGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGGATA 117228
|| ||||| | |||| | | ||| || |||| ||||| | || | | | | |
Sbjct 506781 AGAGCGTCAGTAAGGAACTCCTGCTCGATGCCAACAGCCTCGACAATGACGTCCTCAACA 506840
Query 117229 GTTTCGGTAGTGGGTCTATTACGCAAAGT-CTTGAAGAGCTCCACGGCAAACTCCTGGTG 117287
| | | | ||||| || | ||| || | ||| ||| |||||| || |||
Sbjct 506841 ATCTTCTTTGAGGGTCGGTT-CTCAAGGTGCGAGAAAAGCAGGCAGGCAAAGTCAGTGTG 506899
Query 117288 GAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCG 117347
|||||||| |||||||| || || || || |||||| ||||| ||||||||||| ||
Sbjct 506900 CAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCAGGCATGAGACCTCG 506959
Query 117348 CTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGC 117407
|||||| | ||| | || | | ||| || |||||||||||||| ||||| || ||
Sbjct 506960 CTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCGGAGAAGAAGATGCCCTCGACGGCGGC 507019
Query 117408 AAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT-GTCAAACCATTTCATTGCCC 117466
||| |||| || ||||| | |||| | || ||| || | | ||| || | ||||
Sbjct 507020 AAAGGCAATGAGTCGCTCTCCAAAGGTG-GACTCTTCGTCGGAGATCCACTTGAGGGCCC 507078
Query 117467 ATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506
| | ||||| |||| || || || | || | ||||||
Sbjct 507079 AGTCGGCCTTTTTCTTGATGCAGGGGATGGTCTCGATGGC 507118
>seq4
Length=3654803
Score = 105 bits (116), Expect = 8e-18
Identities = 202/293 (69%), Gaps = 6/293 (2%)
Strand=Plus/Minus
Query 169178 GATGAGACCCTTGATGTGAGAACCATCATTATCGGCATCTGTCATAATCATAAGACGACC 169237
||| |||||||||||||| |||||||||| ||| ||| ||||| ||||| ||| | ||
Sbjct 3112746 GATCAGACCCTTGATGTGGGAACCATCATGATCCTGATCGGTCATGATCATCAGATGCCC 3112687
Query 169238 ATAGCGAAGTTCAGAAACATCTTG-GTAGTCTTTTCCTTGT--TGAAGACCCAAGATCTT 169294
|| || || || || || | ||||| || ||||| || ||||| | |||||
Sbjct 3112686 GTATCGCAGGTC-CTTGCAGCTCGTGTAGTGCTT--CTTGTGCTGCAGACCGATGATCTC 3112630
Query 169295 CTTGAGATCGTTGAACTCTTGGTTTGATGTGAGCTGTGCCACTGAAGCGTCGCGGACATT 169354
||||| | | | || ||| ||| ||| ||| || || || || || || ||
Sbjct 3112629 CTTGATAGCCTGGATCTCGGCGTTCTTCATGATCTGGTCCGTGGACGCCTCTCGCACGTT 3112570
Query 169355 CTTACACTTCCCACGGAGAGGAAAGACGCCATAGTGATCACGTCCAACGACGGAGAGACC 169414
||| ||||| ||||||||| ||||||| | || || |||| || || || ||
Sbjct 3112569 GAGCATCTTACCACGCAGAGGAAAGGCGCCATATCGTTCTCGACCAATCACAGACAGTCC 3112510
Query 169415 CGCGACCGCAAGGGTTTTCGCTGAATCACCCTCCGTGACAATGAGGGTACACT 169467
||| ||| | ||| | || || || ||||| |||| |||||| || ||||
Sbjct 3112509 AGCGTTCGCCATGGTCATGGCGGAGTCTCCCTCAGTGAGAATGAGCGTGCACT 3112457
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589980586131960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |