Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31] 29 sequences; 20,308,363 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2 145 9e-30 seq4 105 8e-18 >seq2 Length=3052417 Score = 145 bits (160), Expect = 9e-30 Identities = 348/520 (67%), Gaps = 16/520 (3%) Strand=Plus/Plus Query 116995 ACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATAAAGTCAAAT 117054 ||||||||||| || ||||||||||| || | || ||||| ||||| ||||| || Sbjct 506607 ACTCGCTTCTCGAAAAAGTTGGTCTTGCCGGCCAGAGAGATGTTCTCCATGAAGTCGAAG 506666 Query 117055 GGATTCTTCGCGTTCCAAA--TGGGTGGCACCC----CAACTTGTTTGAGGAGACGATCC 117108 || || | | ||| | | | || | ||| ||||| || ||||| || Sbjct 506667 GGGTTGGTGGAGTTATACACCTTGGAGTTACCGAGAGCAACT------AGCAGACGGTCA 506720 Query 117109 GACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACATGGG 117168 | ||| |||| ||||||| | ||||| || | ||||||||| | ||| ||| || Sbjct 506721 GCGACAAACTCGATGTACTGGCACATCAGCTTGGCGTTCATACCAAGCAGACCACAGGGC 506780 Query 117169 AGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGGATA 117228 || ||||| | |||| | | ||| || |||| ||||| | || | | | | | Sbjct 506781 AGAGCGTCAGTAAGGAACTCCTGCTCGATGCCAACAGCCTCGACAATGACGTCCTCAACA 506840 Query 117229 GTTTCGGTAGTGGGTCTATTACGCAAAGT-CTTGAAGAGCTCCACGGCAAACTCCTGGTG 117287 | | | | ||||| || | ||| || | ||| ||| |||||| || ||| Sbjct 506841 ATCTTCTTTGAGGGTCGGTT-CTCAAGGTGCGAGAAAAGCAGGCAGGCAAAGTCAGTGTG 506899 Query 117288 GAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCG 117347 |||||||| |||||||| || || || || |||||| ||||| ||||||||||| || Sbjct 506900 CAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCAGGCATGAGACCTCG 506959 Query 117348 CTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGC 117407 |||||| | ||| | || | | ||| || |||||||||||||| ||||| || || Sbjct 506960 CTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCGGAGAAGAAGATGCCCTCGACGGCGGC 507019 Query 117408 AAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT-GTCAAACCATTTCATTGCCC 117466 ||| |||| || ||||| | |||| | || ||| || | | ||| || | |||| Sbjct 507020 AAAGGCAATGAGTCGCTCTCCAAAGGTG-GACTCTTCGTCGGAGATCCACTTGAGGGCCC 507078 Query 117467 ATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 | | ||||| |||| || || || | || | |||||| Sbjct 507079 AGTCGGCCTTTTTCTTGATGCAGGGGATGGTCTCGATGGC 507118 >seq4 Length=3654803 Score = 105 bits (116), Expect = 8e-18 Identities = 202/293 (69%), Gaps = 6/293 (2%) Strand=Plus/Minus Query 169178 GATGAGACCCTTGATGTGAGAACCATCATTATCGGCATCTGTCATAATCATAAGACGACC 169237 ||| |||||||||||||| |||||||||| ||| ||| ||||| ||||| ||| | || Sbjct 3112746 GATCAGACCCTTGATGTGGGAACCATCATGATCCTGATCGGTCATGATCATCAGATGCCC 3112687 Query 169238 ATAGCGAAGTTCAGAAACATCTTG-GTAGTCTTTTCCTTGT--TGAAGACCCAAGATCTT 169294 || || || || || || | ||||| || ||||| || ||||| | ||||| Sbjct 3112686 GTATCGCAGGTC-CTTGCAGCTCGTGTAGTGCTT--CTTGTGCTGCAGACCGATGATCTC 3112630 Query 169295 CTTGAGATCGTTGAACTCTTGGTTTGATGTGAGCTGTGCCACTGAAGCGTCGCGGACATT 169354 ||||| | | | || ||| ||| ||| ||| || || || || || || || Sbjct 3112629 CTTGATAGCCTGGATCTCGGCGTTCTTCATGATCTGGTCCGTGGACGCCTCTCGCACGTT 3112570 Query 169355 CTTACACTTCCCACGGAGAGGAAAGACGCCATAGTGATCACGTCCAACGACGGAGAGACC 169414 ||| ||||| ||||||||| ||||||| | || || |||| || || || || Sbjct 3112569 GAGCATCTTACCACGCAGAGGAAAGGCGCCATATCGTTCTCGACCAATCACAGACAGTCC 3112510 Query 169415 CGCGACCGCAAGGGTTTTCGCTGAATCACCCTCCGTGACAATGAGGGTACACT 169467 ||| ||| | ||| | || || || ||||| |||| |||||| || |||| Sbjct 3112509 AGCGTTCGCCATGGTCATGGCGGAGTCTCCCTCAGTGAGAATGAGCGTGCACT 3112457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980586131960