Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31] 29 sequences; 20,308,363 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq6 170 4e-37 seq5 140 7e-28 >seq6 Length=3777980 Score = 170 bits (188), Expect = 4e-37 Identities = 181/238 (76%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 || ||||| || ||| || || ||||||||||| || || || ||||| |||| |||||| Sbjct 1245205 TCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGT 1245146 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 || || || |||||||||||||| |||||||||||||| || ||||| || || || || Sbjct 1245145 TCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGGATTCC 1245086 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || ||||| || || || ||||||||| ||||||||||| || ||||| || || Sbjct 1245085 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCCACCTCGAG 1245026 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTTATGGTTACTTGGTG 195156 ||| | ||||| || || | || || || || | ||||| | ||||| |||||| Sbjct 1245025 GGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCACT--GGGTTAGTTGGTG 1244970 Score = 154 bits (170), Expect = 3e-32 Identities = 166/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| || || || || ||||||||||| || || || ||||| || | ||| |||| Sbjct 1363892 AGTCGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCGG 1363833 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || || |||||||||||||| |||||||||||||| || ||||| || ||||| || || Sbjct 1363832 CCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCC 1363773 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||| || || || ||||||||| || |||||||| ||| ||||| || ||||| Sbjct 1363772 TTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTG 1363713 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 | ||||| || || | || || || || | ||||||| Sbjct 1363712 ATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATTT 1363673 >seq5 Length=4047401 Score = 140 bits (154), Expect = 7e-28 Identities = 130/165 (79%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 || ||||| | ||| || || ||||||||||| || ||||| ||||| || | || || Sbjct 2184056 TCGGAGTCGGAGAACGAGATGGAGAGTGGACTCCTTCTGAATGTTGTAGTCAGACAGGGT 2183997 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 || ||||| |||||||||||||| ||||| || ||||| || ||||| |||||||| || Sbjct 2183996 TCGGCCATCCTCGAGCTGCTTACCGGCGAAAATCAGTCGCTGCTGGTCCGGAGGAATTCC 2183937 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGA 195083 || ||||| ||||| || ||||||||| || |||||||| || Sbjct 2183936 CTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGA 2183892 Score = 118 bits (130), Expect = 2e-21 Identities = 109/138 (79%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 || ||||| | ||| || || ||||||||||| || || || ||||| |||| |||||| Sbjct 2184458 TCGGAGTCGAAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGT 2184399 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 || ||||| |||||||||||||| || || || ||||| || ||||| || ||||| || Sbjct 2184398 TCGGCCATCCTCGAGCTGCTTACCAGCAAAAATCAGTCGCTGCTGGTCCGGGGGAATTCC 2184339 Query 195039 TTCTTTGTCTTGAATTTT 195056 || ||||| ||||| || Sbjct 2184338 CTCCTTGTCCTGAATCTT 2184321 Score = 114 bits (126), Expect = 3e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||| |||||||||||||| || || || ||||| || ||||| || ||||| || || Sbjct 2184220 CCATCCTCGAGCTGCTTACCAGCAAAAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCC 2184161 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||| ||||| || |||||| || ||||| ||||| ||| || || || || || Sbjct 2184160 TTGTCCTGAATCTTGGACTTGACATTATCAATAGTGTCAGAAGACTCAACCTCGAGAGTG 2184101 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | |||||||| |||| ||| || ||||| | ||||| Sbjct 2184100 ATGGTCTTTCCAGTCAGAGTCTTGACGAAAATCTGCAT 2184063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109481187758243