Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31]
29 sequences; 20,308,363 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq6 170 4e-37
seq5 140 7e-28
>seq6
Length=3777980
Score = 170 bits (188), Expect = 4e-37
Identities = 181/238 (76%), Gaps = 2/238 (1%)
Strand=Plus/Minus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
|| ||||| || ||| || || ||||||||||| || || || ||||| |||| ||||||
Sbjct 1245205 TCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGT 1245146
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
|| || || |||||||||||||| |||||||||||||| || ||||| || || || ||
Sbjct 1245145 TCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGGATTCC 1245086
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098
|| ||||| || || || ||||||||| ||||||||||| || ||||| || ||
Sbjct 1245085 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCCACCTCGAG 1245026
Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTTATGGTTACTTGGTG 195156
||| | ||||| || || | || || || || | ||||| | ||||| ||||||
Sbjct 1245025 GGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCACT--GGGTTAGTTGGTG 1244970
Score = 154 bits (170), Expect = 3e-32
Identities = 166/220 (75%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982
|||| || || || || ||||||||||| || || || ||||| || | ||| ||||
Sbjct 1363892 AGTCGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCGG 1363833
Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042
|| || |||||||||||||| |||||||||||||| || ||||| || ||||| || ||
Sbjct 1363832 CCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCC 1363773
Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102
||||| || || || ||||||||| || |||||||| ||| ||||| || |||||
Sbjct 1363772 TTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTG 1363713
Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142
| ||||| || || | || || || || | |||||||
Sbjct 1363712 ATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATTT 1363673
>seq5
Length=4047401
Score = 140 bits (154), Expect = 7e-28
Identities = 130/165 (79%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
|| ||||| | ||| || || ||||||||||| || ||||| ||||| || | || ||
Sbjct 2184056 TCGGAGTCGGAGAACGAGATGGAGAGTGGACTCCTTCTGAATGTTGTAGTCAGACAGGGT 2183997
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
|| ||||| |||||||||||||| ||||| || ||||| || ||||| |||||||| ||
Sbjct 2183996 TCGGCCATCCTCGAGCTGCTTACCGGCGAAAATCAGTCGCTGCTGGTCCGGAGGAATTCC 2183937
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGA 195083
|| ||||| ||||| || ||||||||| || |||||||| ||
Sbjct 2183936 CTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGA 2183892
Score = 118 bits (130), Expect = 2e-21
Identities = 109/138 (79%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
|| ||||| | ||| || || ||||||||||| || || || ||||| |||| ||||||
Sbjct 2184458 TCGGAGTCGAAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGT 2184399
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
|| ||||| |||||||||||||| || || || ||||| || ||||| || ||||| ||
Sbjct 2184398 TCGGCCATCCTCGAGCTGCTTACCAGCAAAAATCAGTCGCTGCTGGTCCGGGGGAATTCC 2184339
Query 195039 TTCTTTGTCTTGAATTTT 195056
|| ||||| ||||| ||
Sbjct 2184338 CTCCTTGTCCTGAATCTT 2184321
Score = 114 bits (126), Expect = 3e-20
Identities = 120/158 (76%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042
||||| |||||||||||||| || || || ||||| || ||||| || ||||| || ||
Sbjct 2184220 CCATCCTCGAGCTGCTTACCAGCAAAAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCC 2184161
Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102
||||| ||||| || |||||| || ||||| ||||| ||| || || || || ||
Sbjct 2184160 TTGTCCTGAATCTTGGACTTGACATTATCAATAGTGTCAGAAGACTCAACCTCGAGAGTG 2184101
Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
| |||||||| |||| ||| || ||||| | |||||
Sbjct 2184100 ATGGTCTTTCCAGTCAGAGTCTTGACGAAAATCTGCAT 2184063
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109481187758243
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |