Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31] 29 sequences; 20,308,363 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq6 100 2e-16 seq5 87.8 1e-12 >seq6 Length=3777980 Score = 100 bits (110), Expect = 2e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| ||||| |||| | || || ||||| || ||||| || Sbjct 1245174 TCCTTCTGGATGTTGTAGTCGGAAAGAGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAG 1245115 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || ||||| |||||||| | || | ||||||||||| ||||| |||||| Sbjct 1245114 ATAAGTCGCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG 1245055 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| || ||| || |||| ||| || || || || || || ||||| ||| Sbjct 1245054 TCAATGGTGTCAGAGGACTCCACCTCGAGGGTGATAGTCTTGCCAGTAAGGGTCTTGACA 1244995 Query 34971 AAGATCTGCA 34980 ||||| |||| Sbjct 1244994 AAGATTTGCA 1244985 Score = 98.7 bits (108), Expect = 6e-16 Identities = 140/196 (71%), Gaps = 1/196 (1%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| |||||| |||| | || || ||||| || ||||| || Sbjct 1363865 TCCTTCTGGATGTTGTAGTCAGAAAGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAG 1363806 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || ||||| |||||||| | || | ||||||||||| ||||| |||||| Sbjct 1363805 ATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG 1363746 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||| || |||| ||| || || || || || || ||||| ||| Sbjct 1363745 TCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTACCGGTAAGGGTCTTGACA 1363686 Query 34971 AAGATCTGCATATTCG 34986 || |||||||| |||| Sbjct 1363685 AAAATCTGCAT-TTCG 1363671 >seq5 Length=4047401 Score = 87.8 bits (96), Expect = 1e-12 Identities = 118/162 (73%), Gaps = 8/162 (5%) Strand=Plus/Minus Query 34825 CATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCT 34884 |||| || ||||| || || ||||| || ||||| |||||||| | || | ||||||| Sbjct 2184219 CATCCTCGAGCTGCTTACCAGCAAAAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCCT 2184160 Query 34885 TGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACG 34940 |||| |||||| ||||| || |||| || ||| | |||||| |||| Sbjct 2184159 TGTCCTGAATCTTGGACTTGAC--AT--TATCAATAGTGTCAGAAGACTCAACCTCGAGA 2184104 Query 34941 GTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || ||||| ||||| || |||||||| || || ||||||||| Sbjct 2184103 GTGATGGTCTTTCCAGTCAGAGTCTTGACGAAAATCTGCATA 2184062 Score = 86.0 bits (94), Expect = 4e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| || ||| |||| |||| || ||||| || ||||| || Sbjct 2184025 TCCTTCTGAATGTTGTAGTCAGACAGGGTTCGGCCATCCTCGAGCTGCTTACCGGCGAAA 2183966 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 || ||||| |||||||| | || | ||||||||||| |||||| Sbjct 2183965 ATCAGTCGCTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGAATCTT 2183919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633485262312