Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31]
29 sequences; 20,308,363 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq6 100 2e-16
seq5 87.8 1e-12
>seq6
Length=3777980
Score = 100 bits (110), Expect = 2e-16
Identities = 136/190 (72%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| ||||| ||||| |||| | || || ||||| || ||||| ||
Sbjct 1245174 TCCTTCTGGATGTTGTAGTCGGAAAGAGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAG 1245115
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| ||||| |||||||| | || | ||||||||||| ||||| ||||||
Sbjct 1245114 ATAAGTCGCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG 1245055
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | ||| || ||| || |||| ||| || || || || || || ||||| |||
Sbjct 1245054 TCAATGGTGTCAGAGGACTCCACCTCGAGGGTGATAGTCTTGCCAGTAAGGGTCTTGACA 1244995
Query 34971 AAGATCTGCA 34980
||||| ||||
Sbjct 1244994 AAGATTTGCA 1244985
Score = 98.7 bits (108), Expect = 6e-16
Identities = 140/196 (71%), Gaps = 1/196 (1%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| ||||| |||||| |||| | || || ||||| || ||||| ||
Sbjct 1363865 TCCTTCTGGATGTTGTAGTCAGAAAGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAG 1363806
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| ||||| |||||||| | || | ||||||||||| ||||| ||||||
Sbjct 1363805 ATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG 1363746
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | || | ||| || |||| ||| || || || || || || ||||| |||
Sbjct 1363745 TCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTACCGGTAAGGGTCTTGACA 1363686
Query 34971 AAGATCTGCATATTCG 34986
|| |||||||| ||||
Sbjct 1363685 AAAATCTGCAT-TTCG 1363671
>seq5
Length=4047401
Score = 87.8 bits (96), Expect = 1e-12
Identities = 118/162 (73%), Gaps = 8/162 (5%)
Strand=Plus/Minus
Query 34825 CATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCT 34884
|||| || ||||| || || ||||| || ||||| |||||||| | || | |||||||
Sbjct 2184219 CATCCTCGAGCTGCTTACCAGCAAAAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCCT 2184160
Query 34885 TGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACG 34940
|||| |||||| ||||| || |||| || ||| | |||||| ||||
Sbjct 2184159 TGTCCTGAATCTTGGACTTGAC--AT--TATCAATAGTGTCAGAAGACTCAACCTCGAGA 2184104
Query 34941 GTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|| ||||| ||||| || |||||||| || || |||||||||
Sbjct 2184103 GTGATGGTCTTTCCAGTCAGAGTCTTGACGAAAATCTGCATA 2184062
Score = 86.0 bits (94), Expect = 4e-12
Identities = 83/107 (78%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||||||||| ||||| || ||| |||| |||| || ||||| || ||||| ||
Sbjct 2184025 TCCTTCTGAATGTTGTAGTCAGACAGGGTTCGGCCATCCTCGAGCTGCTTACCGGCGAAA 2183966
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897
|| ||||| |||||||| | || | ||||||||||| ||||||
Sbjct 2183965 ATCAGTCGCTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGAATCTT 2183919
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324633485262312
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |