Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31] 29 sequences; 20,308,363 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq3 183 2e-41 seq4 104 2e-17 >seq3 Length=3339761 Score = 183 bits (202), Expect = 2e-41 Identities = 400/594 (67%), Gaps = 19/594 (3%) Strand=Plus/Minus Query 29809 TCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCT 29868 |||||||||||| ||| || || |||||||||| |||||| | | |||||| || Sbjct 1502279 TCCACGTGATCCTTGTACACATGGGCGTCTCCCATGGTGTGAATGAGCTCTCCACAGTCC 1502220 Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 | ||||||| || || ||||| ||||| |||| |||| ||| ||||| ||||| Sbjct 1502219 AAATCGGTGACCTGGGCAATCATTCGGGTGAGCAGAGCGTAGGAGGCAATGTTGAAGGGG 1502160 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAG-----CTC--TCC 29981 || || || |||| ||| | || | ||| || ||||||||||| || ||| ||| Sbjct 1502159 ACTCCAAGACCCAGGTCACATGATCGCTGATACAGCTGACACGACAGACGTCCTCGTTCC 1502100 Query 29982 GTCGCT--------CACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGG 30033 | | ||| |||||||| || | |||| || |||||||| ||||| Sbjct 1502099 GAGTTTTTGTACGACACATAAAACTGGCAAAACATGTGACAGGGAGGAAGCGCCATCTTT 1502040 Query 30034 CCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTG 30093 | || ||||||||| || ||| ||||| || | ||| | |||||| | ||| Sbjct 1502039 GGGAGATCGGCGGGGTTCCATGCAGACAGAATGATTCGACGGTCGTGAGGGTTGGTTCTG 1501980 Query 30094 ATGAG-GTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCAT 30152 | ||| || | | | || ||||| ||||| || || | ||| || | ||| Sbjct 1501979 A-GAGTGTGTATCACCTGTTTGAGCTGGTCCACGCCTTGGCCAGTGTAATCCGTG-TCAC 1501922 Query 30153 G-TCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTC 30211 | | ||||||| ||||||||||| | ||| ||||| || || |||||||||||||||| Sbjct 1501921 AATTCTTGTACTCGGCTCCGAAATGGCGCCATTGGAAGCCATAGACCGGTCCCAGGTCTC 1501862 Query 30212 CCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCC 30271 ||||| ||||| | | || ||| |||| || || | || || || |||||| Sbjct 1501861 CCTCTCGTCTGTGGCCCAGCCCGGCCTTTTCCAGGAACTCCTTAGATCCATTTCCGTCCC 1501802 Query 30272 AGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACA 30331 |||| | | |||||| || | |||| || ||| | || || ||||||| Sbjct 1501801 AGATGTGAATGTTTTTCTCGCTCAGTTTTTTGCCGTCGGTGCATCCAGCCACAAACCACA 1501742 Query 30332 GCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAA 30385 |||||||||| ||| | | ||||| | |||||| ||||| ||||||| Sbjct 1501741 AAAGCTCCTCCAGAACGCCTCGGTAGAAGACTCGCTTGGTGGTGAGCAGGGGAA 1501688 >seq4 Length=3654803 Score = 104 bits (114), Expect = 2e-17 Identities = 136/184 (74%), Gaps = 6/184 (3%) Strand=Plus/Plus Query 52015 TCGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCGTCGT 52074 |||| |||||| | || | ||| ||| | ||| |||| || ||||||||||||||| Sbjct 443595 TCGTTAAGGTGCGAATGCGAACCACCAAGATCCCCCAGATTGGAGACAAGTTTGCGTCGC 443654 Query 52075 -TCACGGCGCAAAAGGGGACG--TGCGGAGCCGTCCTGACCCAGGAGGACATGCCCTTCG 52131 |||||| || ||||| || || | | ||| | ||| | ||||||||||| ||| Sbjct 443655 GTCACGGA-CAGAAGGGTACCATTGGTGTGACGTACCGAC--ATGAGGACATGCCGTTCT 443711 Query 52132 ACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCATCCAGGATGA 52191 | || || ||||| ||||| |||||||||||||||||||| |||| || | |||| Sbjct 443712 CCGCCGAGGGAGTGGTCCCCGATATCATCATCAACCCCCACGCCATTCCTTCGCGTATGA 443771 Query 52192 CCGT 52195 |||| Sbjct 443772 CCGT 443775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408617455579217