Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31] 29 sequences; 20,308,363 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq6 369 7e-97 seq2 318 1e-81 >seq6 Length=3777980 Score = 369 bits (408), Expect = 7e-97 Identities = 1219/1882 (65%), Gaps = 70/1882 (4%) Strand=Plus/Minus Query 212556 GTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTTAGG 212615 || ||||| | || ||||||||||| |||| || || |||||||| || ||||| || Sbjct 3776869 GTGAACTGGATGGGGGCAGCAGCAGCCATGGTTCGCAGGTAGTACATACCTGTCTTGAGA 3776810 Query 212616 CCCTTGCCCCAGCCGTGCATGTGCATTGCTGTGAGTTTCTTCAGCTTAATATTCTGGTCA 212675 ||||| |||||||| | |||||| | ||||| || || |||| Sbjct 3776809 CCCTTCTTCCAGCCGTAGAAGTGCATGGAGGTGAGCTTGCCCA-----------TGGTA- 3776762 Query 212676 TCCTCGTGGCCCAGATGT--AGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGT 212733 | | || ||||| | ||| ||||||||| |||||| ||||| |||| | || Sbjct 3776761 -----GGGTCCTTGATGTGAATGTTGAGGGACTGAGACTGGTCAATGAAGGGGGATCGGT 3776707 Query 212734 CAGCGGCCATGTCTATGATATCTCT-CTGGGAGAGCTCCCACACGGTCTTGAAGATTTCT 212792 |||||||||| || ||||| || || ||| || | |||||||||||||||| | | || Sbjct 3776706 CAGCGGCCATCTCAATGAT-TCGCTTCTGAGAAATCTCCCACACGGTCTTGTACAGGTCC 3776648 Query 212793 TTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGTATGGTCAGCTGC 212852 |||| |||| || | | ||||||||||||||| || || ||| |||| | Sbjct 3776647 TTGATTTCCTGGGGAATGTTGGGGATGTTCTGCACGGATCCGTTGT-------CAGCAAC 3776595 Query 212853 AGG-CG------CATGTCCTCGTTCCAGAGGCC--CCTGGTCTCCAGGCACTTGACCAGG 212903 | || |||| ||||||||| ||||| ||| | |||| ||||| ||| Sbjct 3776594 AATTCGGTTCTTCATGGTCTCGTTCCACAGGCCAACCTCAAC--CAGGTCCTTGAGCAGC 3776537 Query 212904 TGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTG 212963 |||||||| |||||||| ||||| | || || | | ||||| ||| |||||| Sbjct 3776536 CAGGGGTTGACAATCTGGAATTCACCAGCAAGAACTCGTCGAGAGTAAATGTTGGAAGTG 3776477 Query 212964 TAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGA 213023 |||||||||| || ||| ||| || |||||||| | |||| ||| |||||||||||| Sbjct 3776476 TAGGGCTCGAAGCACTCATTGAAACCAAGAATCTGGGAAGTGGAGGCAGTGGGCATGGGA 3776417 Query 213024 GCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAG 213083 || |||| || ||| | || || || ||| | | || || |||| Sbjct 3776416 GCGACCAACAGCGAGTTTCGCATACCAGTCTTCATGATCTTGGCCTTGAGATCGTCCCAC 3776357 Query 213084 TCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCT 213143 ||||| | || | ||| |||||||||| | || ||||| | | || Sbjct 3776356 TCCCA-CAGCTCGGAAGGAG--------TCACGTTCCAGAGATCGAACTGGAGGTCACCC 3776306 Query 213144 TTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAG 213203 ||| | ||| ||||||| | | ||||| || | ||| |||| |||| | Sbjct 3776305 TTGGAGGCAGGGGAGCCCTGGAAGGTCTCGTAGGCACCGTCCTCAAGAGCCATCTCGTAA 3776246 Query 213204 GACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCC 213263 || || | | || ||| ||||||||| || || |||| ||||||||||||||||| Sbjct 3776245 GAGGCTTCGACAGCTCCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCTTCTTGGCC 3776186 Query 213264 TCTGGGGACGTGAAGGGCA-TCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCC 213322 || |||| || || | || | || || || || ||||| |||||||| || Sbjct 3776185 TCCTCGGACTCAAATGGGAGTCGTAGAGCCATG-AAGGTGTCGGCCAGACCCTGGACACC 3776127 Query 213323 GATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAAAGTT 213382 | | ||||||| ||||| || ||||||||| | ||| | ||||| |||| Sbjct 3776126 CAGAGCAATGGGTCGGTGTCGCATGTTAGACTTCTTGGCCTCGGGGACCGGGTAGTAGTT 3776067 Query 213383 GCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTC 213442 | ||||||||| ||||||||| || || |||| | | | ||| | || Sbjct 3776066 TCGGTCGATGATAGCGTTGAGGTTTCGCACAATGACCTTGGCAATGTCGTGCAGCTTCTT 3776007 Query 213443 G---TGATTGAACACGTAGCCCCCGTCCTGC---ACAAACTCAGGCAGGGCGATGCTGGC 213496 | | | |||| || | |||| | ||||| ||||| |||||| || Sbjct 3776006 GAAGTCGTAGAACGAGTTGGTGTCGTCTCGAGTAACAAAAGTGGGCAGAGCGATGGAAGC 3775947 Query 213497 CAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTT 213556 ||||||||| || || ||||| | || | |||||| | ||||| ||||||||| Sbjct 3775946 CAGGTTGCAGACAGCGACCTCATCAGGAGAAGAGTACTCTACAATCTCACAGCACAGGTT 3775887 Query 213557 GCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTA 213616 | || || || ||||||| ||||| |||||| |||| || |||||||| Sbjct 3775886 AGAAGACTTAATTGTTCCGAGGTTCTTCTGGTTGGACTTTCGGTTGCAGGAGTCCTTGTA 3775827 Query 213617 GAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCT 213676 |||||| ||||| |||| ||| |||| | | || || ||| ||| || | | Sbjct 3775826 CAGCATGAAGGGGTTGCCGGACTCGGTCTGGCAGTCGAGAATGTGGTACCACAGCTTCTG 3775767 Query 213677 GGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGTT 213736 ||| || || | | | || | | ||||||||| ||||| |||| || Sbjct 3775766 GGCAGGGATGGTTCGTCGGCCTCGGCCCTCCTT---CTCGTACTGCTCGTACAGCTGCTT 3775710 Query 213737 GAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCA 213796 || || | || |||| ||| || || || || ||| ||||| ||| |||| Sbjct 3775709 AAACTCATCACCATAGACGTCGTCAAGACCGGGGCACTCGTTGGGGCACATCAGGGTCCA 3775650 Query 213797 GTCCCCGTCAT-CTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACA 213855 || ||| | ||| ||||| || |||||||||||| |||| |||||| || ||||| Sbjct 3775649 TTCAGCGTTCTGCTC-GACTCGCTCCATGAACAGGTCGGGGATCCACAGAGCCAGGAACA 3775591 Query 213856 GGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGA 213915 |||| | || | |||| ||| ||| ||| || ||||| || || || |||| Sbjct 3775590 GGTCTCGGGCTCGAATCTCTTCCTTTCCGTGGTTCTTTCGCAGCTCGCAGAACTCGAAGA 3775531 Query 213916 TGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGCCCT 213972 | || ||||||| ||||| | ||| || |||||||| || | || | ||||| |||| Sbjct 3775530 TATCGTCGTGCCAGGGCTCAAGGTACATTGCAAAGGCACCAGGTCGCTTGTTGCCTCCCT 3775471 Query 213973 GGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACT 214032 | || || | ||| |||| ||| ||||| | ||| || | |||||||| Sbjct 3775470 GATCAACGTATCGGGCGGTGTTGTTATAGACACGCAGCATGGGCACGATACCGTTGGAGG 3775411 Query 214033 GTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTA 214092 |||||| ||||| || || || ||||| | || | | |||| || || || || | Sbjct 3775410 TTCCGTTAGTTCCAGCAATGTAGGAGCCAGTAGCTCGGATGTTGTGGATAGACAGACCGA 3775351 Query 214093 TGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCA 214152 | || ||||| ||||||| |||| || ||| | | || || ||||||| | | Sbjct 3775350 TACCGCCGGCAGACTTGGAAATCAGAGCACAGGTTTTGAGGGTATCGTAGATGCCGTCGA 3775291 Query 214153 TGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAG 214212 || ||| || | | ||| | | ||| || ||| | ||| ||| || | || | Sbjct 3775290 TGGAGTCGTCCTTCATGTTGACAAGGAAACACGACGACATCTGAGGCTGGGGAGTTCCGG 3775231 Query 214213 AGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCT 214272 |||| | || |||||| || || | | |||| | ||| | ||||||||| Sbjct 3775230 CGTTGTAGAGAGTGGGGGAAGCGTGAGTGAAGTACTTCTGAGACATATAGTTGTAGGTCT 3775171 Query 214273 CCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCACCTCATCAGCATGTGCT 214332 | | | | || |||| || |||||| | || | | ||| | ||| || | Sbjct 3775170 CAATGGCCCGGGCAATGTTGTCGCCGTGGATACCGACAGAGACTCGCATGATCATCTGTT 3775111 Query 214333 GGGGCCTCT---CTATGGGTCCTTTGGGGCCCTTGAGCAGGTAGGAGCGCTCCAGAGTCT 214389 |||| | || | | | || ||| | | |||||||| | |||||||| |||| Sbjct 3775110 GGGGTCGCTCGGCAACAGCACCGTTGACTCGC---AGCAGGTATGCTCGCTCCAGGGTCT 3775054 Query 214390 TGAACCCAAAGTAGGAGTAGGT 214411 |||| ||||||||| |||||| Sbjct 3775053 TGAAGCCAAAGTAGTTGTAGGT 3775032 >seq2 Length=3052417 Score = 318 bits (352), Expect = 1e-81 Identities = 515/733 (70%), Gaps = 11/733 (2%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| ||||| ||||| || ||||| ||||| || ||| ||||||||||| Sbjct 506594 CTGGTAGTCGGACACTCGCTTCTCGAAAAAGTTGGTCTTGCCGGCCAGAGAGATGTTCTC 506653 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCC--GTGTCAGGCCCATCTGTTCCAGC 47956 ||||||| ||||||||||| | |||||||||| | || | || | | ||| Sbjct 506654 CATGAAGTCGAAGGGGTTGGTGGAGTTATACACCTTGGAGTTA--CCGAGAGCAACTAGC 506711 Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 || | || ||||| |||||||||| | |||| || || |||||| || | || Sbjct 506712 AGACGGTCAGCGACAAACTCGATGTACTGGCACATCAGCTTGGCGTTCATACCAAGCAGA 506771 Query 48017 GACAC-GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAAT 48075 ||| ||||| ||| | || || ||||||| ||| || || || || | | | Sbjct 506772 C-CACAGGGCAGAGCGTCAGTAAGGAACTCCTGCTCGATGCCAACAGCCTCGACAATGAC 506830 Query 48076 CTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGC 48135 | || ||| || ||||||| ||| |||||| | | |||| |||||| Sbjct 506831 GTCCTCAACAATCTTCTTTGAGGGTCGGTTCTCAAGGTGCGAGAAA---AGCAGGCAGGC 506887 Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195 |||||| |||||| || ||||| ||| ||||||| ||||||||||| ||| ||||| Sbjct 506888 AAAGTCAGTGTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCAGG 506947 Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255 ||||| || | || ||||||||||| || | ||||||||||| |||||||||||||| Sbjct 506948 CATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCGGAGAAGAAGATGCC 507007 Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTT-GTCTGAGATCC 48314 ||| || || || || || |||| | |||||| |||| | |||| ||| ||||||| Sbjct 507008 CTCGACGGCGGCAAAGGCAATGAGTCGCTCTCC-AAAGGTGGACTCTTCGTCGGAGATCC 507066 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA 48374 | || |||||||| ||||| ||||||||||| || || ||||| ||||| ||| | Sbjct 507067 ACTTGAGGGCCCAGTCGGCCTTTTTCTTGATGCAGGGGATGGTCTCGATGGCGTTGAACA 507126 Query 48375 GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAG 48434 | | | | ||| | |||| | || || || |||| | ||| |||| | Sbjct 507127 GGTAGGTTCGCTCTTTGGGGTCCTTGATGTATGTGTCGATCAGCAGCGAGTAGGTCTCGG 507186 Query 48435 AGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCA 48494 |||| | ||||| || ||||||||| ||||||||| | ||||||| |||||| Sbjct 507187 AGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCCTCGGGGGCCTGCA 507246 Query 48495 CTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGA 48554 | || |||||||| ||| | ||| ||||| || || || || || || |||||||||| Sbjct 507247 CCTCGCCGGAGAATCGCTCAACCAGGTTCTCGTTAACGATACCGTCGGAGGCAGCAAAGA 507306 Query 48555 AGGCAAGGACATG 48567 | || || || || Sbjct 507307 ATGCGAGAACGTG 507319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532462319360