Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31] 29 sequences; 20,308,363 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2 264 2e-65 seq6 260 3e-64 >seq2 Length=3052417 Score = 264 bits (292), Expect = 2e-65 Identities = 574/858 (67%), Gaps = 20/858 (2%) Strand=Plus/Minus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 || || ||| |||||||||||||||| | ||| |||||| || || ||||||||| Sbjct 507442 GAAATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACAGCTGAGGAGATTGAT 507383 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 || | |||||||||| | |||| | | ||| |||| ||| || ||| Sbjct 507382 CTTGGAAAGGACATGGGTGACTGGGAGAACAGACTCAACAACGATGAGCGGTTCTTCATC 507323 Query 25594 T---ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAG 25650 | |||| | ||||||||||| ||||| || ||||| || |||||||| ||| ||| Sbjct 507322 TCCCACGTTCTCGCATTCTTTGCTGCCTCCGACGGTATCGTTAACGAGAACCTGGTTGAG 507263 Query 25651 AGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCC 25710 ||||| || | || |||||| | ||||||||||| |||||||| |||||||| Sbjct 507262 CGATTCTCCGGCGAGGTGCAGGCCCCCGAGGCCAAGTGCTTCTACGGCTTCCAGATCATG 507203 Query 25711 ATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGAC 25767 || || || | ||||| ||| || | ||| ||||| || ||||| | ||| Sbjct 507202 ATGGAGAACATCCACTCCGAGACCTACTC---GCTGCTGATCGACACATACATCAAGGAC 507146 Query 25768 GTCGCCGAGAGAGATCGG--CTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGA 25825 | | |||| || | ||||| ||||||||| ||| ||| ||||||||| | Sbjct 507145 --CCCAAAGAGCGAACCTACCTGTTCAACGCCATCGAGACCATCCCCTGCATCAAGAAAA 507088 Query 25826 AGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCG-CTACGTTTGGCGAGCGGCTG 25884 |||| |||||| | ||||||||| | | | || | | || ||||| ||||| || Sbjct 507087 AGGCCGACTGGGCCCTCAAGTGGATCTCCGACGA-AGAGTCCACCTTTGGAGAGCGACTC 507029 Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944 | |||||||| || || ||||||||||| ||| ||| || || || ||||||||||| Sbjct 507028 ATTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCTTTCGCCTCCATCTTCTGG 506969 Query 25945 CTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGAC 26004 |||||| || || |||||| || || ||| ||||||||||||||| | | ||| Sbjct 506968 CTCAAGAAGCGAGGTCTCATGCCTGGCCTCACCTTCTCCAACGAGCTCATCTCCCGAGAC 506909 Query 26005 GAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCT 26064 |||||||| |||| || |||||||||||||| | | || ||| | || ||| Sbjct 506908 GAGGGTCTGCACACTGACTTTGCCTGCCTGCTTTTCTCG---CACCTTGAGAACCGACCC 506852 Query 26065 TCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNN 26124 || | ||| || | |||| |||||||| | |||||| ||||||| | Sbjct 506851 TCAAAGAAGATTGTTGAGGACGTCATTGTCGAGGCTGTTGGCATCGAGCAGGAGTTCCTT 506792 Query 26125 NNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATT 26184 | || |||||| || || ||| |||| ||||| Sbjct 506791 ACTGACGCTCTGCCCTGTGGTCTGCTTGGTATGAACGCCAAGCTGATGTGCCAGTACATC 506732 Query 26185 GAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCC 26243 |||| ||| || |||| |||||| || | || || | ||| | || | | | Sbjct 506731 GAGTTTGTCGCTGACCGTCTGCTAGTTGC-TCTCGGTAACTCCAAGGTGTATAACTCCAC 506673 Query 26244 TAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAA 26303 ||||| |||||||| ||||| ||||| || ||| || ||||||||||| || || || Sbjct 506672 CAACCCCTTCGACTTCATGGAGAACATCTCTCTGGCCGGCAAGACCAACTTTTTCGAGAA 506613 Query 26304 GAGGGTCGGCGACTATCA 26321 | | || |||||| || Sbjct 506612 GCGAGTGTCCGACTACCA 506595 >seq6 Length=3777980 Score = 260 bits (288), Expect = 3e-64 Identities = 936/1444 (65%), Gaps = 31/1444 (2%) Strand=Plus/Minus Query 221427 CGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAAGG 221486 |||||||||||||||| |||||| ||||||| |||||||||| || || | Sbjct 3776229 CGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCTTCTTGGCCTCCTCGGACTCAAATG 3776170 Query 221487 GCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGT 221546 | | || || | ||| ||||||||| ||||| || || | | | ||||| | || Sbjct 3776169 GGAGTCGTAGAGCCATGAAGGTGTCGGCCAGACCCTGGACACCCAGAGCAATGGGTCGGT 3776110 Query 221547 GTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGT 221606 ||| | |||| || || || || || || || |||| |||||| | | || Sbjct 3776109 GTCGCATGTTAGACTTCTTGGCCTCGGGGACCGGGTAGTAGTTTCGGTCGATGATAGCGT 3776050 Query 221607 TGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAACT 221666 ||||||| | ||||| || | | ||| |||||||| | | | | | | | | Sbjct 3776049 TGAGGTTTCGCACAATGACCTTGGCAATGTCGTGCAGCTTCTTGAAGTCGTAGAACGAGT 3775990 Query 221667 CGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACACA 221726 | | |||| | ||| ||||||| | || || | | |||||||| || | Sbjct 3775989 TGGTGTCGTC-TCGAGTA-----ACAAAAGTGGGCAGAGCGATGGAAGCCAGGTTGCAGA 3775936 Query 221727 CGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGA 221786 | || ||||| || | |||| || ||||| || ||||| |||| | Sbjct 3775935 CAGCGACCTCATCAGGAGAAGAGTACTCTACAATCTCACAGCACAGGTTAGAAGACTTAA 3775876 Query 221787 TGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGG 221846 | || || |||| || || || ||||| || ||| | ||||||||| ||||| |||| Sbjct 3775875 TTGTTCCGAGGTTCTTCTGGTTGGACTTTCGGTTGCAGGAGTCCTTGTACAGCATGAAGG 3775816 Query 221847 GACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGG-CGCTCACC 221905 | ||| | ||| ||| | ||||| | || ||| || | ||||| | | Sbjct 3775815 GGTTGCCGGACTCGGTCTGGCAGTCGAGAATGTGGTACCACAGCT-TCTGGGCAGGGATG 3775757 Query 221906 GTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTTCA 221965 || | | || ||||| ||| | | | || || ||| | ||||| ||| Sbjct 3775756 GTTCGTCGGCCTCGGCCCTCCTTCTCGTACTGCTCG---TACAGCTGCTTAAACTCATCA 3775700 Query 221966 CCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTTGTTG 222025 || || | ||||| || || || ||| | ||| |||||||| |||| | ||| Sbjct 3775699 CCATAGACGTCGTCAAGACCGGGGCACTCGTTGGGGCACATCAGGGTCCATTCAGCGTTC 3775640 Query 222026 TCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTC 222085 | | ||| | || |||||| ||||| ||||||||||| ||| | || || |||| || Sbjct 3775639 TGCTCGACTCGCTCCATGAACAGGTCGGGGATCCACAGAGCCAGGAACAGGTCTCGGGCT 3775580 Query 222086 CGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGC 222145 || ||| ||| |||| ||| || | ||| || | ||||| || || || ||||| Sbjct 3775579 CGAATCTCTTCCTTTCCGTGGTTCTTTCGCAGCTCGCAGAACTCGAAGATATCGTCGTGC 3775520 Query 222146 CACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACC-AT 222204 || ||||| || || | || | || || |||||||||||||| |||||||| || || Sbjct 3775519 CAGGGCTCAAGGTACATTGCAAAGGCACCAGGTCGCTTGTTGCCTCCCTGATCAACGTAT 3775460 Query 222205 CCTCTCCAGAGC-GTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGG 222263 | | | | ||| ||| || || | || || | |||||||| ||||| | Sbjct 3775459 CGGG--CGGTGTTGTTATAGACACGCAGCATGGGCACGATACCGTTGGAGGTTCCGTTAG 3775402 Query 222264 TGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGACATGCCGATACCACCGG 222323 | || |||||| | || || | | ||| | ||||| |||||||| |||| Sbjct 3775401 TTCCAGCAATGTAGGAGCCAGTAGCTCGGATGTTGTGGATAGACAGACCGATACCGCCGG 3775342 Query 222324 CGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCT 222383 | || || |||| || ||| | ||||| || || |||||| || || ||||| | Sbjct 3775341 CAGACTTGGAAATCAGAGCACAGGTTTTGAGGGTATCGTAGATGCCGTCGATGGAGTCGT 3775282 Query 222384 CCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTAAACA 222443 |||| | ||| | || ||||| ||||||||||||| | || | | |||||| | | Sbjct 3775281 CCTTCATGTTGACAAGGAAACACGACGACATCTGAGGCTGGGGAGTTCCGGCGTTGTAGA 3775222 Query 222444 GCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCTACGACTC 222503 | ||||| ||||| || ||||| | |||||| | ||| ||||| | | | | Sbjct 3775221 GAGTGGGGGAAGCGTGAGTGAAGTACTTCTGAGACATATAGTTGTAGGTCTCAATGGCCC 3775162 Query 222504 TGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTGGGGCCTCT 222563 ||| |||||||| ||||| || | | | || |||| ||| | ||||| | || Sbjct 3775161 GGGCAATGTTGTCGCCGTGGATACCGACAGAGACTCGCATGATCATCTGTTGGGGTCGCT 3775102 Query 222564 ---CCACAGGACCCTTGGAGCTGGAGAGCAGGTACGATTTTTCCAGAGTCTTGAACCCAA 222620 | |||| ||| ||| || | |||||||| | | ||||| |||||||| |||| Sbjct 3775101 CGGCAACAGCACCGTTG--ACTCG-CAGCAGGTATGCTCGCTCCAGGGTCTTGAAGCCAA 3775045 Query 222621 AGTAGTTG-AGGTCAAAGTCTCTGCCGTGAACCACGGCGGCGTCCAGCTC--CGAC-TTG 222676 |||||||| |||| ||||||| | ||| | | |||| ||| ||||| || | ||| Sbjct 3775044 AGTAGTTGTAGGT-GAAGTCTCGGTCGTAGAGAATGGCGCCGTTGAGCTCGTCGGCGTTG 3774986 Query 222677 TGCTTTACGCTCAACTCGAAAAAGCGCTCAGACACGAGGGGAGCGTTCTCTTTGGTGTCG 222736 || ||| | ||| | | || || || | ||| | || || ||| | | Sbjct 3774985 GCCTGCACGGT---GTCGTACAGCTCCTTGGAGACCATGGGCGAGTGCTTCTTGTTTCGG 3774929 Query 222737 GGGTTAACGTTGTGGTACAGCTGCCACATGGCATCAGAGAAC-GTGTCGGGAGTCTGCTT 222795 ||||| |||| |||||||| | | | | | |||||| | || | |||||||| Sbjct 3774928 GGGTTCACGTAGTGGTACAAGTCGTAAACCACCTGCGAGAACTGCTTCTTG-GTCTGCTT 3774870 Query 222796 GTGCAGATTCGACACGGCGATCCGAGACGCCAAGATACCATAGTCAGGGTGCACGGTGGT 222855 ||||| || ||||| ||||| || | |||| || |||||||||| |||| ||||| Sbjct 3774869 ATGCAGGTTGGACACAGCGATTCGGGCAGCCAGAATCGCATAGTCAGGATGCAGAGTGGT 3774810 Query 222856 CATG 222859 |||| Sbjct 3774809 CATG 3774806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844463293760