Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31]
29 sequences; 20,308,363 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq5 95.1 8e-14
seq14 93.3 3e-13
seq10 87.8 1e-11
>seq5
Length=4047401
Score = 95.1 bits (104), Expect = 8e-14
Identities = 115/154 (75%), Gaps = 2/154 (1%)
Strand=Plus/Minus
Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676
||| || || ||||| ||||||||||| || || || || || || |||||||| |||||
Sbjct 2184218 ATCCTCGAGCTGCTTACCAGCAAAAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTT 2184159
Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAA 480735
||| |||||||| |||||| |||||||| |||| | | || || || || |
Sbjct 2184158 GTCCTGAATCTTGGACTTGACATTATCAATAGTGTCAGAAGACTCAA-CCTCGAGAGTGA 2184100
Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| || || || || |||||||| |||||||| ||
Sbjct 2184099 TGGTCTTTCCAGTCAGAGTCTTGACGAAAATCTG 2184066
>seq14
Length=1714
Score = 93.3 bits (102), Expect = 3e-13
Identities = 157/225 (70%), Gaps = 2/225 (1%)
Strand=Plus/Plus
Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTG-TTTGGCAAAATGGTAA 474387
||| | || || ||| | ||||| || ||| ||||| || ||| || || || |
Sbjct 1362 GCAGTAGGAATCGATCTTGGAACCACATACTCCTGTGTGGCCCATTTCGCCAA-TGACAG 1420
Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447
||| ||||| || ||||||||||| || || ||||| || || || | ||| | || ||
Sbjct 1421 AGTCGAAATCATCGCCAATGACCAGGGAAACAGAACTACTCCCTCGTTTGTGGCCTTCAC 1480
Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507
|| ||||||| || ||||| |||||||| || | || ||||| || |||| ||
Sbjct 1481 CGACACTGAACGACTCATTGGTGATGCTGCCAAGAACCAGGCTGCCATGAACCCTGCAAA 1540
Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGA 474552
|| | ||||| || || || ||||||| || || || || ||
Sbjct 1541 CACAGTCTTTGACGCCAAGCGACTGATTGGCCGAAAATTCGACGA 1585
>seq10
Length=10100
Score = 87.8 bits (96), Expect = 1e-11
Identities = 156/225 (69%), Gaps = 2/225 (1%)
Strand=Plus/Minus
Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTG-TTTGGCAAAATGGTAA 474387
||| | || || ||| | ||||| || ||| ||||| || ||| || || | |
Sbjct 675 GCAGTAGGAATCGATCTTGGAACCACATACTCCTGTGTGGCCCATTTCGCCAAC-GACAG 617
Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447
||| ||||| || ||||||||||| || || ||||| || || || | ||| | |||||
Sbjct 616 AGTCGAAATCATCGCCAATGACCAGGGAAACAGAACCACTCCCTCGTTTGTGGCCTTTAC 557
Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507
|| ||||||| || ||||| |||||||| || | || || || || |||| ||
Sbjct 556 CGACACTGAACGACTCATTGGTGATGCTGCCAAGAACCAGGCAGCCATGAACCCTGCAAA 497
Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGA 474552
|| | ||||| || || || ||||||| || || || || ||
Sbjct 496 CACAGTCTTTGACGCCAAGCGACTGATTGGCCGAAAATTCGACGA 452
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268177956049292
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |