Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31] 29 sequences; 20,308,363 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq5 95.1 8e-14 seq14 93.3 3e-13 seq10 87.8 1e-11 >seq5 Length=4047401 Score = 95.1 bits (104), Expect = 8e-14 Identities = 115/154 (75%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| || || ||||| ||||||||||| || || || || || || |||||||| ||||| Sbjct 2184218 ATCCTCGAGCTGCTTACCAGCAAAAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTT 2184159 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAA 480735 ||| |||||||| |||||| |||||||| |||| | | || || || || | Sbjct 2184158 GTCCTGAATCTTGGACTTGACATTATCAATAGTGTCAGAAGACTCAA-CCTCGAGAGTGA 2184100 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || || |||||||| |||||||| || Sbjct 2184099 TGGTCTTTCCAGTCAGAGTCTTGACGAAAATCTG 2184066 >seq14 Length=1714 Score = 93.3 bits (102), Expect = 3e-13 Identities = 157/225 (70%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTG-TTTGGCAAAATGGTAA 474387 ||| | || || ||| | ||||| || ||| ||||| || ||| || || || | Sbjct 1362 GCAGTAGGAATCGATCTTGGAACCACATACTCCTGTGTGGCCCATTTCGCCAA-TGACAG 1420 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 ||| ||||| || ||||||||||| || || ||||| || || || | ||| | || || Sbjct 1421 AGTCGAAATCATCGCCAATGACCAGGGAAACAGAACTACTCCCTCGTTTGTGGCCTTCAC 1480 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507 || ||||||| || ||||| |||||||| || | || ||||| || |||| || Sbjct 1481 CGACACTGAACGACTCATTGGTGATGCTGCCAAGAACCAGGCTGCCATGAACCCTGCAAA 1540 Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGA 474552 || | ||||| || || || ||||||| || || || || || Sbjct 1541 CACAGTCTTTGACGCCAAGCGACTGATTGGCCGAAAATTCGACGA 1585 >seq10 Length=10100 Score = 87.8 bits (96), Expect = 1e-11 Identities = 156/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTG-TTTGGCAAAATGGTAA 474387 ||| | || || ||| | ||||| || ||| ||||| || ||| || || | | Sbjct 675 GCAGTAGGAATCGATCTTGGAACCACATACTCCTGTGTGGCCCATTTCGCCAAC-GACAG 617 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 ||| ||||| || ||||||||||| || || ||||| || || || | ||| | ||||| Sbjct 616 AGTCGAAATCATCGCCAATGACCAGGGAAACAGAACCACTCCCTCGTTTGTGGCCTTTAC 557 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507 || ||||||| || ||||| |||||||| || | || || || || |||| || Sbjct 556 CGACACTGAACGACTCATTGGTGATGCTGCCAAGAACCAGGCAGCCATGAACCCTGCAAA 497 Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGA 474552 || | ||||| || || || ||||||| || || || || || Sbjct 496 CACAGTCTTTGACGCCAAGCGACTGATTGGCCGAAAATTCGACGA 452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268177956049292