Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31] 29 sequences; 20,308,363 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2 145 9e-30 seq4 87.8 2e-12 >seq2 Length=3052417 Score = 145 bits (160), Expect = 9e-30 Identities = 348/520 (67%), Gaps = 16/520 (3%) Strand=Plus/Minus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 |||||| | || | || || || |||| ||||| | ||||| | || ||| | | Sbjct 507118 GCCATCGAGACCATCCCCTGCATCAAGAAAAAGGCCGACTGGGCCCTCAAGTGGATCTCC 507059 Query 65056 -ACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTT 65114 || ||| || | |||| | ||||| || |||| ||||| || ||||| ||||| Sbjct 507058 GACGAAGAGTC-CACCTTTGGAGAGCGACTCATTGCCTTTGCCGCCGTCGAGGGCATCTT 507000 Query 65115 CTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCT 65174 ||||||||| || ||| | | || | ||| | |||||||| ||||||||||| ||||| Sbjct 506999 CTTCTCCGGCTCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGCCT 506940 Query 65175 ATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGA 65234 |||||| || || || || |||||||| |||||||| ||| || |||||| Sbjct 506939 CACCTTCTCCAACGAGCTCATCTCCCGAGACGAGGGTCTGCACACTGACTTTGCCTGCCT 506880 Query 65235 GCTCTTCAAG-ACTTTGCGTAATAGACCCACTACCGAAACTATCCACGCCATCGTGAAAG 65293 ||| ||| | || ||| | || ||||| | | | | | | | | | || | | Sbjct 506879 GCTTTTCTCGCACCTTGAG-AACCGACCCTCAAAGAAGATTGTTGAGGACGTCATTGTCG 506821 Query 65294 AGGCGGTTGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTA 65353 |||| |||| || ||| | | |||| | ||||| || || ||| ||| | |||| Sbjct 506820 AGGCTGTTGGCATCGAGCAGGAGTTCCTTACTGACGCTCTGCCCTGTGGTCTGCTTGGTA 506761 Query 65354 TGAACTCTGAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAG 65413 ||||| | || ||||| | ||||||| |||| ||| | || ||||| || || Sbjct 506760 TGAACGCCAAGCTGATGTGCCAGTACATCGAGTTTGTCGCTGACCGTCTGCT------AG 506707 Query 65414 TTG----GGGTGCCACCCA--TTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACA 65467 ||| ||| | || | | | ||| | | || || || ||||| ||||| |||| Sbjct 506706 TTGCTCTCGGTAACTCCAAGGTGTATAACTCCACCAACCCCTTCGACTTCATGGAGAACA 506647 Query 65468 TTAGCCTTGATGGGAAGACCAACTTCTTTGAGAAGCGAGT 65507 | || | || ||||||||||| || ||||||||||| Sbjct 506646 TCTCTCTGGCCGGCAAGACCAACTTTTTCGAGAAGCGAGT 506607 >seq4 Length=3654803 Score = 87.8 bits (96), Expect = 2e-12 Identities = 200/294 (68%), Gaps = 8/294 (3%) Strand=Plus/Plus Query 13605 AGTGTACTCTCATTGTCACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCGGGTCTCT 13664 |||| || |||||| |||| ||||| || || || | ||| | ||| || || || | Sbjct 3112457 AGTGCACGCTCATTCTCACTGAGGGAGACTCCGCCATGACCATGGCGAACGCTGGACTGT 3112516 Query 13665 CTGTCGTTGGTCGTGATCACTACGGTGTGTTCCCACTTCGCGGTAA-ATGTAAGAATGTT 13723 |||| ||||||| || | || || | || || || || ||||| ||| || || Sbjct 3112517 CTGTGATTGGTCGAGAACGATATGGCGCCTTTCCTCTGCGTGGTAAGATGCTC-AACGTG 3112575 Query 13724 CGGGACGCTTCGGTGGCACAGCTCACATCAAACCAGGAGTTCAACGATCTCAAGAAGATC 13783 || || || || || ||| ||| ||| ||| || | | | ||||| ||||| Sbjct 3112576 CGAGAGGCGTCCACGGACCAGATCATGAAGAACGCCGAGATCCAGGCTATCAAGGAGATC 3112635 Query 13784 CTTGGTCTTCA--ACAAGGAAAAGACTAC-CAAGATGTTTCTGAACTTCGCTATGGTCGT 13840 | ||||| || ||||| || ||||| | || || || || || || || | | Sbjct 3112636 ATCGGTCTGCAGCACAAG--AAGCACTACACGAGCTGCAAG-GACCTGCGATACGGGCAT 3112692 Query 13841 CTTATGATTATGACAGATGCCGATAATGATGGTTCTCACATCAAGGGTCTCATC 13894 || ||||| ||||| ||| ||| |||||||||| |||||||||||||| ||| Sbjct 3112693 CTGATGATCATGACCGATCAGGATCATGATGGTTCCCACATCAAGGGTCTGATC 3112746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569383743520