Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31]
29 sequences; 20,308,363 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq2 145 9e-30
seq4 87.8 2e-12
>seq2
Length=3052417
Score = 145 bits (160), Expect = 9e-30
Identities = 348/520 (67%), Gaps = 16/520 (3%)
Strand=Plus/Minus
Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055
|||||| | || | || || || |||| ||||| | ||||| | || ||| | |
Sbjct 507118 GCCATCGAGACCATCCCCTGCATCAAGAAAAAGGCCGACTGGGCCCTCAAGTGGATCTCC 507059
Query 65056 -ACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTT 65114
|| ||| || | |||| | ||||| || |||| ||||| || ||||| |||||
Sbjct 507058 GACGAAGAGTC-CACCTTTGGAGAGCGACTCATTGCCTTTGCCGCCGTCGAGGGCATCTT 507000
Query 65115 CTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCT 65174
||||||||| || ||| | | || | ||| | |||||||| ||||||||||| |||||
Sbjct 506999 CTTCTCCGGCTCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGCCT 506940
Query 65175 ATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGA 65234
|||||| || || || || |||||||| |||||||| ||| || ||||||
Sbjct 506939 CACCTTCTCCAACGAGCTCATCTCCCGAGACGAGGGTCTGCACACTGACTTTGCCTGCCT 506880
Query 65235 GCTCTTCAAG-ACTTTGCGTAATAGACCCACTACCGAAACTATCCACGCCATCGTGAAAG 65293
||| ||| | || ||| | || ||||| | | | | | | | | | || | |
Sbjct 506879 GCTTTTCTCGCACCTTGAG-AACCGACCCTCAAAGAAGATTGTTGAGGACGTCATTGTCG 506821
Query 65294 AGGCGGTTGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTA 65353
|||| |||| || ||| | | |||| | ||||| || || ||| ||| | ||||
Sbjct 506820 AGGCTGTTGGCATCGAGCAGGAGTTCCTTACTGACGCTCTGCCCTGTGGTCTGCTTGGTA 506761
Query 65354 TGAACTCTGAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAG 65413
||||| | || ||||| | ||||||| |||| ||| | || ||||| || ||
Sbjct 506760 TGAACGCCAAGCTGATGTGCCAGTACATCGAGTTTGTCGCTGACCGTCTGCT------AG 506707
Query 65414 TTG----GGGTGCCACCCA--TTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACA 65467
||| ||| | || | | | ||| | | || || || ||||| ||||| ||||
Sbjct 506706 TTGCTCTCGGTAACTCCAAGGTGTATAACTCCACCAACCCCTTCGACTTCATGGAGAACA 506647
Query 65468 TTAGCCTTGATGGGAAGACCAACTTCTTTGAGAAGCGAGT 65507
| || | || ||||||||||| || |||||||||||
Sbjct 506646 TCTCTCTGGCCGGCAAGACCAACTTTTTCGAGAAGCGAGT 506607
>seq4
Length=3654803
Score = 87.8 bits (96), Expect = 2e-12
Identities = 200/294 (68%), Gaps = 8/294 (3%)
Strand=Plus/Plus
Query 13605 AGTGTACTCTCATTGTCACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCGGGTCTCT 13664
|||| || |||||| |||| ||||| || || || | ||| | ||| || || || |
Sbjct 3112457 AGTGCACGCTCATTCTCACTGAGGGAGACTCCGCCATGACCATGGCGAACGCTGGACTGT 3112516
Query 13665 CTGTCGTTGGTCGTGATCACTACGGTGTGTTCCCACTTCGCGGTAA-ATGTAAGAATGTT 13723
|||| ||||||| || | || || | || || || || ||||| ||| || ||
Sbjct 3112517 CTGTGATTGGTCGAGAACGATATGGCGCCTTTCCTCTGCGTGGTAAGATGCTC-AACGTG 3112575
Query 13724 CGGGACGCTTCGGTGGCACAGCTCACATCAAACCAGGAGTTCAACGATCTCAAGAAGATC 13783
|| || || || || ||| ||| ||| ||| || | | | ||||| |||||
Sbjct 3112576 CGAGAGGCGTCCACGGACCAGATCATGAAGAACGCCGAGATCCAGGCTATCAAGGAGATC 3112635
Query 13784 CTTGGTCTTCA--ACAAGGAAAAGACTAC-CAAGATGTTTCTGAACTTCGCTATGGTCGT 13840
| ||||| || ||||| || ||||| | || || || || || || || | |
Sbjct 3112636 ATCGGTCTGCAGCACAAG--AAGCACTACACGAGCTGCAAG-GACCTGCGATACGGGCAT 3112692
Query 13841 CTTATGATTATGACAGATGCCGATAATGATGGTTCTCACATCAAGGGTCTCATC 13894
|| ||||| ||||| ||| ||| |||||||||| |||||||||||||| |||
Sbjct 3112693 CTGATGATCATGACCGATCAGGATCATGATGGTTCCCACATCAAGGGTCTGATC 3112746
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596569383743520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |