Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31]
29 sequences; 20,308,363 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq6 158 4e-33
seq4 102 2e-16
seq3 89.7 2e-12
seq2 84.2 6e-11
>seq6
Length=3777980
Score = 158 bits (174), Expect = 4e-33
Identities = 572/882 (65%), Gaps = 21/882 (2%)
Strand=Plus/Minus
Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689
||| ||||||||||||||||||||||||||| ||| || || || | |||||||||||
Sbjct 3775913 GTACTCTACAATCTCACAGCACAGGTTAGAAGACTTAATTGTTCCGAGGTTCTTCTGGTT 3775854
Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749
|| || | ||| || | |||||||| || ||| | ||| | || | ||| ||||
Sbjct 3775853 GGACTTTCGGTTGCAGGAGTCCTTGTACAGCATGAAGGGGTTGCCGGACTCGGTCTGGCA 3775794
Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGT-TGTATCTGCCTTCCG 155808
||| ||||| | ||| || | ||||| | | | | || | || ||| |||
Sbjct 3775793 GTCGAGAATGTGGTACCACAGCTTCTGGGCAGGGA-TGGTTCGTCGGCCTCGGCCCTCCT 3775735
Query 155809 ACTCATATTTCATATACAGCGTTCGGTAA-TCCTCACCGTAACAATCACTCAGTCCAGGG 155867
||| || | | |||||| | | || || ||||| || || || || |||
Sbjct 3775734 TCTCGTACTGCTCGTACAGC-TGCTTAAACTCATCACCATAGACGTCGTCAAGACCGGGG 3775676
Query 155868 CACTTATCGGGGCAAAACAGCGACCAAATTTTA--TTACCGAT-TACACGCTCCATAAAT 155924
|||| | |||||| | ||| | ||| || | | | | | || |||||||| ||
Sbjct 3775675 CACTCGTTGGGGCACATCAGGGTCCA---TTCAGCGTTCTGCTCGACTCGCTCCATGAAC 3775619
Query 155925 ACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGA--CTCCTCATCGCCGT 155982
| || ||| | ||| ||| ||||| | || | || ||| || | ||||
Sbjct 3775618 AGGTCGGGGATCCACAGAGCCAGGAACAGGTCTCGGGC--TCGAATCTCTTCCTTTCCGT 3775561
Query 155983 GATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAG 156042
| ||||| || ||||| |||| || ||||| || ||||| || ||||| |
Sbjct 3775560 GGTTCTTTCGCAGCTCGCAGAACTCGAAGATATCGTCGTGCCAGGGCTCAAGGTACATTG 3775501
Query 156043 CAAAACTACCA---TTCCTCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGA 156099
|||| |||| | | ||||| |||||||| || || || || || || || |||
Sbjct 3775500 CAAAGGCACCAGGTCGCTTGTTGCCTCCCTGATCAACGTATCGGGCGGTGTTGTTATAGA 3775441
Query 156100 CACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAG 156159
||| ||||| || | ||||| ||||| || || || ||||| ||| | || ||||
Sbjct 3775440 CACGCAGCATGGGCACGATACCGTTGGAGGTTCCGTTAGTTCCAGCAATGTAGGAGCCAG 3775381
Query 156160 ATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGC 156219
| || | || || ||| || || ||||| || | | || ||||| |||| |
Sbjct 3775380 TAGCTCGGATGTTGTGGATAGACAGACCGATACCGCCGGCAGACTTGGAAATCAGAGCAC 3775321
Query 156220 ATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCA--TTGATAGTAGATA 156277
| || | |||| | | || || || || || || || | || |||| | || |
Sbjct 3775320 AGGTTTTGAGGGTATCGTAGATGCCGTCGATGGAGTCGTCCTTCATGTTGACA--AGGAA 3775263
Query 156278 GCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAAT 156337
||||| | ||||| | || ||||| |||||| | || || || | || ||| |
Sbjct 3775262 ACACGACGACATCTGAGGCTGGGGAGTTCCGGCGTTGTAGAGAGTGGGGGAAGCGTGAGT 3775203
Query 156338 AAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTG 156397
|| ||||| | ||||||||| | ||| ||||| | | ||| || |||||
Sbjct 3775202 GAAGTACTTCTGAGACATATAGTTGTAGGTCTCAATGGCCCGGGCAATGTTGTCGCCGTG 3775143
Query 156398 AATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAAT 156457
|||| || |||||| | ||| ||| || || || ||||| ||| | || | |
Sbjct 3775142 GATACCGACAGAGACTCGCATGATCATCTGTTGGGGTCGCTCGGCAACAGCACCGTTGAC 3775083
Query 156458 TCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499
|||||| |||||||| || ||||| || || || || || ||
Sbjct 3775082 TCGCAGCAGGTATGCTCGCTCCAGGGTCTTGAAGCCAAAGTA 3775041
>seq4
Length=3654803
Score = 102 bits (112), Expect = 2e-16
Identities = 129/177 (73%), Gaps = 8/177 (5%)
Strand=Plus/Minus
Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544
|| || || | |||||||||||| ||||||||||| ||||| || |||||||| || |||
Sbjct 444135 GCTCCATGGGCAATCATACAATCTCGCTCCATTTCTCCGAATCGCAGACCACCCTCTCGA 444076
Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACC----GATGGAGCGGCT 251600
| | ||||||| | ||||| || || ||| | || |||||| | | |||||
Sbjct 444075 GATCGACCCTCGACGGGCTGTCGGGTCAGAATTTGCACAGGACCACGTGCTCGAGCG--- 444019
Query 251601 ATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAA 251657
|| ||| |||| |||||||| |||||||||||| | | |||||| | |||
Sbjct 444018 -TGGATCTTGTCATCCACCATATGACGCAGACGCTGGTAGTAAGTGGGACCCAAGAA 443963
>seq3
Length=3339761
Score = 89.7 bits (98), Expect = 2e-12
Identities = 104/140 (74%), Gaps = 3/140 (2%)
Strand=Plus/Plus
Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872
||||| || | | |||||| ||||| | || ||||| |||||||| ||||||||
Sbjct 2281613 AGAATCTCCTTGAGACGGGGCACACCGAGCGTCACGTT---CTTGGACGACACACCAGCG 2281669
Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932
| ||||| || ||||| || | ||||||| ||||| ||||| || || |||||
Sbjct 2281670 TAATGGAAGGTGTTCAGTGTCATCTGAGTAGCGGGCTCTCCAATGGACTGGGCAGCAATA 2281729
Query 301933 ATACCAACCATTTCTCCTGG 301952
| ||||||||||||||| ||
Sbjct 2281730 ACACCAACCATTTCTCCAGG 2281749
>seq2
Length=3052417
Score = 84.2 bits (92), Expect = 6e-11
Identities = 118/166 (71%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 251496 AATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCCCTACCCTC 251555
||| | |||||| ||||||||||| || | ||| ||||||||||| |||| | ||| ||
Sbjct 2140972 AATAACACAATCTCGCTCCATTTCTCCCAGACGCAGACCACCATCTCGAGATCGACCTTC 2140913
Query 251556 GGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGCTTATCATT 251615
|| ||||| ||||||||| | |||||| || || ||| |||||| |
Sbjct 2140912 GGTGGGCTGTCGAGTGAGAACCGCTCGAGGACCTCGGGGTCGAGCATGCATCTTATCCAT 2140853
Query 251616 TACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGATG 251661
||||||||||| || ||| ||| | ||| || | |||||||
Sbjct 2140852 AACCATATGCTTCAGCTTCTGATAGTAGATGGGGCCAAAGAAGATG 2140807
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471817053127773
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |