Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31] 29 sequences; 20,308,363 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq6 158 4e-33 seq4 102 2e-16 seq3 89.7 2e-12 seq2 84.2 6e-11 >seq6 Length=3777980 Score = 158 bits (174), Expect = 4e-33 Identities = 572/882 (65%), Gaps = 21/882 (2%) Strand=Plus/Minus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 ||| ||||||||||||||||||||||||||| ||| || || || | ||||||||||| Sbjct 3775913 GTACTCTACAATCTCACAGCACAGGTTAGAAGACTTAATTGTTCCGAGGTTCTTCTGGTT 3775854 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 || || | ||| || | |||||||| || ||| | ||| | || | ||| |||| Sbjct 3775853 GGACTTTCGGTTGCAGGAGTCCTTGTACAGCATGAAGGGGTTGCCGGACTCGGTCTGGCA 3775794 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGT-TGTATCTGCCTTCCG 155808 ||| ||||| | ||| || | ||||| | | | | || | || ||| ||| Sbjct 3775793 GTCGAGAATGTGGTACCACAGCTTCTGGGCAGGGA-TGGTTCGTCGGCCTCGGCCCTCCT 3775735 Query 155809 ACTCATATTTCATATACAGCGTTCGGTAA-TCCTCACCGTAACAATCACTCAGTCCAGGG 155867 ||| || | | |||||| | | || || ||||| || || || || ||| Sbjct 3775734 TCTCGTACTGCTCGTACAGC-TGCTTAAACTCATCACCATAGACGTCGTCAAGACCGGGG 3775676 Query 155868 CACTTATCGGGGCAAAACAGCGACCAAATTTTA--TTACCGAT-TACACGCTCCATAAAT 155924 |||| | |||||| | ||| | ||| || | | | | | || |||||||| || Sbjct 3775675 CACTCGTTGGGGCACATCAGGGTCCA---TTCAGCGTTCTGCTCGACTCGCTCCATGAAC 3775619 Query 155925 ACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGA--CTCCTCATCGCCGT 155982 | || ||| | ||| ||| ||||| | || | || ||| || | |||| Sbjct 3775618 AGGTCGGGGATCCACAGAGCCAGGAACAGGTCTCGGGC--TCGAATCTCTTCCTTTCCGT 3775561 Query 155983 GATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAG 156042 | ||||| || ||||| |||| || ||||| || ||||| || ||||| | Sbjct 3775560 GGTTCTTTCGCAGCTCGCAGAACTCGAAGATATCGTCGTGCCAGGGCTCAAGGTACATTG 3775501 Query 156043 CAAAACTACCA---TTCCTCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGA 156099 |||| |||| | | ||||| |||||||| || || || || || || || ||| Sbjct 3775500 CAAAGGCACCAGGTCGCTTGTTGCCTCCCTGATCAACGTATCGGGCGGTGTTGTTATAGA 3775441 Query 156100 CACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAG 156159 ||| ||||| || | ||||| ||||| || || || ||||| ||| | || |||| Sbjct 3775440 CACGCAGCATGGGCACGATACCGTTGGAGGTTCCGTTAGTTCCAGCAATGTAGGAGCCAG 3775381 Query 156160 ATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGC 156219 | || | || || ||| || || ||||| || | | || ||||| |||| | Sbjct 3775380 TAGCTCGGATGTTGTGGATAGACAGACCGATACCGCCGGCAGACTTGGAAATCAGAGCAC 3775321 Query 156220 ATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCA--TTGATAGTAGATA 156277 | || | |||| | | || || || || || || || | || |||| | || | Sbjct 3775320 AGGTTTTGAGGGTATCGTAGATGCCGTCGATGGAGTCGTCCTTCATGTTGACA--AGGAA 3775263 Query 156278 GCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAAT 156337 ||||| | ||||| | || ||||| |||||| | || || || | || ||| | Sbjct 3775262 ACACGACGACATCTGAGGCTGGGGAGTTCCGGCGTTGTAGAGAGTGGGGGAAGCGTGAGT 3775203 Query 156338 AAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTG 156397 || ||||| | ||||||||| | ||| ||||| | | ||| || ||||| Sbjct 3775202 GAAGTACTTCTGAGACATATAGTTGTAGGTCTCAATGGCCCGGGCAATGTTGTCGCCGTG 3775143 Query 156398 AATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAAT 156457 |||| || |||||| | ||| ||| || || || ||||| ||| | || | | Sbjct 3775142 GATACCGACAGAGACTCGCATGATCATCTGTTGGGGTCGCTCGGCAACAGCACCGTTGAC 3775083 Query 156458 TCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 |||||| |||||||| || ||||| || || || || || || Sbjct 3775082 TCGCAGCAGGTATGCTCGCTCCAGGGTCTTGAAGCCAAAGTA 3775041 >seq4 Length=3654803 Score = 102 bits (112), Expect = 2e-16 Identities = 129/177 (73%), Gaps = 8/177 (5%) Strand=Plus/Minus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 || || || | |||||||||||| ||||||||||| ||||| || |||||||| || ||| Sbjct 444135 GCTCCATGGGCAATCATACAATCTCGCTCCATTTCTCCGAATCGCAGACCACCCTCTCGA 444076 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACC----GATGGAGCGGCT 251600 | | ||||||| | ||||| || || ||| | || |||||| | | ||||| Sbjct 444075 GATCGACCCTCGACGGGCTGTCGGGTCAGAATTTGCACAGGACCACGTGCTCGAGCG--- 444019 Query 251601 ATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAA 251657 || ||| |||| |||||||| |||||||||||| | | |||||| | ||| Sbjct 444018 -TGGATCTTGTCATCCACCATATGACGCAGACGCTGGTAGTAAGTGGGACCCAAGAA 443963 >seq3 Length=3339761 Score = 89.7 bits (98), Expect = 2e-12 Identities = 104/140 (74%), Gaps = 3/140 (2%) Strand=Plus/Plus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 ||||| || | | |||||| ||||| | || ||||| |||||||| |||||||| Sbjct 2281613 AGAATCTCCTTGAGACGGGGCACACCGAGCGTCACGTT---CTTGGACGACACACCAGCG 2281669 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 | ||||| || ||||| || | ||||||| ||||| ||||| || || ||||| Sbjct 2281670 TAATGGAAGGTGTTCAGTGTCATCTGAGTAGCGGGCTCTCCAATGGACTGGGCAGCAATA 2281729 Query 301933 ATACCAACCATTTCTCCTGG 301952 | ||||||||||||||| || Sbjct 2281730 ACACCAACCATTTCTCCAGG 2281749 >seq2 Length=3052417 Score = 84.2 bits (92), Expect = 6e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 251496 AATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCCCTACCCTC 251555 ||| | |||||| ||||||||||| || | ||| ||||||||||| |||| | ||| || Sbjct 2140972 AATAACACAATCTCGCTCCATTTCTCCCAGACGCAGACCACCATCTCGAGATCGACCTTC 2140913 Query 251556 GGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGCTTATCATT 251615 || ||||| ||||||||| | |||||| || || ||| |||||| | Sbjct 2140912 GGTGGGCTGTCGAGTGAGAACCGCTCGAGGACCTCGGGGTCGAGCATGCATCTTATCCAT 2140853 Query 251616 TACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGATG 251661 ||||||||||| || ||| ||| | ||| || | ||||||| Sbjct 2140852 AACCATATGCTTCAGCTTCTGATAGTAGATGGGGCCAAAGAAGATG 2140807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817053127773