Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31]
29 sequences; 20,308,363 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq2 199 5e-45
seq6 174 2e-37
seq4 147 3e-29
seq1 113 6e-19
seq3 91.5 2e-12
>seq2
Length=3052417
Score = 199 bits (220), Expect = 5e-45
Identities = 244/326 (75%), Gaps = 13/326 (4%)
Strand=Plus/Plus
Query 869141 GCGACACATGCAGGGACGGCAAAGAGGGCACTATGCGAACCTTCGTCGCGACTGATCATT 869200
|||| | | ||||| | ||||||| || | ||| ||| ||||| || ||| |
Sbjct 506869 GCGAGAAAAGCAGGCA-GGCAAAGT---CAGTGTGCAGACCCTCGTCTCGGGAGATGAGC 506924
Query 869201 TCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAG 869260
|||||| |||| |||||| |||||||| || |||||||||||||| ||||||| | |
Sbjct 506925 TCGTTGGAGAAGGTGAGGCCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCG 506984
Query 869261 AAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAG 869320
||| ||| ||||| |||||||||||||||||||||||| | ||||| ||||| |||||
Sbjct 506985 AAAGAGCCGGAGAAGAAGATGCCCTCGACGGCGGCAAAGGCAATGAGTCGCTCTCCAAAG 507044
Query 869321 GTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGAC 869380
||| || | || | | ||||||||| | |||||||||||||||||| | | |
Sbjct 507045 GTG--GA-CTCTTCGTCGGAGATCCACTTGAGGGCCCAGTCGGCCTTTTTCTTGATGCAG 507101
Query 869381 GGCACCGTGTCGATGGCGCGAAAGAGGT-GGT--CCTTTTCGGCCGGGTCCTTGACATAG 869437
|| | || ||||||||| || |||| ||| || || | |||||||||| ||
Sbjct 507102 GGGATGGTCTCGATGGCGTTGAACAGGTAGGTTCGCTCTTTG---GGGTCCTTGATGTAT 507158
Query 869438 GTGTCGATCAGGAGCGAATAGGTCTC 869463
||||||||||| ||||| ||||||||
Sbjct 507159 GTGTCGATCAGCAGCGAGTAGGTCTC 507184
Score = 132 bits (146), Expect = 6e-25
Identities = 202/287 (70%), Gaps = 3/287 (1%)
Strand=Plus/Plus
Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692
|||||||||||||| || ||||||||||||||| ||| | | |||| | | ||
Sbjct 507186 GAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCCTCGGGGGCCTGC 507245
Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752
||||| ||| || | ||||||||||| ||||| |||||| ||| || ||
Sbjct 507246 ACCTCGCCGGAGAATCGCTCAACCAGGTTCTCGTTAACGATACCGTCGGAGGCAGCAAAG 507305
Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGA---CACCCAGTGG 869809
|| || || ||||| ||| ||| ||||| |||| | |||| | ||||||
Sbjct 507306 AATGCGAGAACGTGGGAGATGAAGAACCGCTCATCGTTGTTGAGTCTGTTCTCCCAGTCA 507365
Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869
| |||| | || || | |||||| || ||||||| |||||||||||||| |||
Sbjct 507366 CCCATGTCCTTTCCAAGATCAATCTCCTCAGCTGTCCAGAAAGAGGCCTCGGCCTTCTTG 507425
Query 869870 TACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCG 869916
||||||| ||| | || ||||| |||| |||||||| ||||| ||
Sbjct 507426 TACATCTGCCAGATTTCGTGGTACTGGATGGGGAAGAGCACAAACCG 507472
Score = 114 bits (126), Expect = 2e-19
Identities = 172/242 (71%), Gaps = 2/242 (1%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| ||| ||| ||| ||||||||||||||||||||| | || |||||
Sbjct 506589 GCCTTCTGGTAGTCGGACACTCGCTTCTCGAAAAAGTTGGTCTTGCCGGCCAGAGAGATG 506648
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||||| | || || ||| | ||||| | |
Sbjct 506649 TTCTCCATGAAGTCGAAGGGGTTGGTGGAGTTATACACCTTGGAGTTACCGAGAGCAACT 506708
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
||||| ||||| |||||||||||||||||||||||||| || ||||||||| || |
Sbjct 506709 AGCAGACGGTCAGCGACAAACTCGATGTACTGGCACATCAGCTTGGCGTTCATACCAAGC 506768
Query 868871 AGCGCCAC-CGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGAT 868929
|| |||| ||||| | || | | ||||| | |||||| | || |||||||| ||
Sbjct 506769 AG-ACCACAGGGCAGAGCGTCAGTAAGGAACTCCTGCTCGATGCCAACAGCCTCGACAAT 506827
Query 868930 GA 868931
||
Sbjct 506828 GA 506829
>seq6
Length=3777980
Score = 174 bits (192), Expect = 2e-37
Identities = 332/489 (68%), Gaps = 15/489 (3%)
Strand=Plus/Minus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
||| || ||||| || || |||| |||| |||| || ||||||||||||| ||||||||
Sbjct 3775472 CTGATCAACGTATCGGGCGGTGTTGTTATAGACACGCAGCATGGGCACGATACCGTTGGA 3775413
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
||||| || || || | ||||| ||| | || || | ||||| | | ||
Sbjct 3775412 GGTTCCGTTAGTTCCAGCAATGTAGGAGCCAGTAGCTCGGATGTTGTGGATAGACAGACC 3775353
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
||| |||||||| |||||||| || || || || |||||| || ||||||||||| ||
Sbjct 3775352 GATACCGCCGGCAGACTTGGAAATCAGAGCACAGGTTTTGAGGGTATCGTAGATGCCGTC 3775293
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
||| |||||| ||||||||| || || || |||||||| | || || || | || ||
Sbjct 3775292 GATGGAGTCGTCCTTCATGTTGACAAGGAAACACGACGACATCTGAGGCTGGGGAGTTCC 3775233
Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364
||||||| |||| ||||| | || ||||| ||| | | ||||| || ||||||
Sbjct 3775232 GGCGTTGTAGAGAGTGGGGGAAGCGTGAGTGAAGTACTTCTGAGACATATAGTTGTAGGT 3775173
Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424
| | ||| | ||| || |||| || | | |||| | |||
Sbjct 3775172 ------CTCAATGGCCCGGGCAATGT---TGTCG------CCGTGGATACCGACAGAGAC 3775128
Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484
||||||| ||| | ||||| |||||| | || | ||| || |||||| |
Sbjct 3775127 TCGCATGATCATCTGTTGGGGTCGCTCGGCAACAGCACCGTTGACTCGCAGCAGGTATGC 3775068
Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGATGGC 1630544
|| || |||| ||| |||||||||| ||| || || ||||||| | | |||||
Sbjct 3775067 TCGCTCCAGGGTCTTGAAGCCAAAGTAGTTGTAGGTGAAGTCTCGGTCGTAGAGAATGGC 3775008
Query 1630545 GGCGTCGAG 1630553
| ||| |||
Sbjct 3775007 GCCGTTGAG 3774999
>seq4
Length=3654803
Score = 147 bits (162), Expect = 3e-29
Identities = 264/386 (68%), Gaps = 0/386 (0%)
Strand=Plus/Minus
Query 18061 ATGAGCACATTCGGCAAGGTATTTAGGGTCACCACCTTTGGCGAGTCGCACGGGGCGGGC 18120
|||||||| ||||||| | | || | |||||||||| |||||||||||| |
Sbjct 2209877 ATGAGCACTTTCGGCACGCTTTTCAAAGTCACCACCTACGGCGAGTCGCACTGCAAATCT 2209818
Query 18121 GTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCACTGGCCGAGGCCGACATCCAG 18180
|| |||||||| | ||||| || ||||| | ||| || | ||| |||| || |||
Sbjct 2209817 GTGGGCTGCATTGTTGACGGAGTTCCGCCCGGAATGGATCTCGATGAGTCCGATATTCAG 2209758
Query 18181 CCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTTTCCACGCCGCGCAACGAGCCC 18240
|| ||| || || || |||| |||||| || || |||| || || |||||||
Sbjct 2209757 CCCCAGCTGACCCGTCGAAGACCTGGCCAGTCGGCTCTGACCACTCCTCGAAACGAGCGA 2209698
Query 18241 GATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTCGGC 18300
||| || |||||| || || ||| ||||| || || || | ||| | | |
Sbjct 2209697 GATGCGGTTGCTATCCAGAGTGGAACCGAGTACGGCAAGACTCTGGGTACCCCCATTGCC 2209638
Query 18301 CTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTATTCCGACATGTGCAAGGTGCCG 18360
| | || ||| |||||||| ||| |||||| || || ||| | | ||
Sbjct 2209637 ATGCTGGTTCAGAACAAGGACCAGCGACCCCACGACTACTCGGAGATGGACGACTACCCC 2209578
Query 18361 CGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCGGGC 18420
|| || || || ||||||||||||||| || |||||||| |||||||| || || ||
Sbjct 2209577 CGACCTTCTCATGCCGACTACACCTACCAGGAGAAGTACGGAATCAAGGCCTCTTCTGGA 2209518
Query 18421 GGAGGCCGGTCGTCTGCCCGCGAGAC 18446
|| ||||| || ||||| || |||||
Sbjct 2209517 GGCGGCCGATCTTCTGCACGAGAGAC 2209492
Score = 95.1 bits (104), Expect = 1e-13
Identities = 85/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 19095 GGCCTCGGCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCG 19154
|| ||||||||||| || || |||||| | || ||| | ||||||||||||||| ||||
Sbjct 2209193 GGTCTCGGCGAGCCCTGTTTCGACAAGCTGGAAGCCACTCTCGCCCACGCCATGATGTCC 2209134
Query 19155 ATCCCGGCCACCAAGGGATTCGAGATTGGCAGCGGGTTTGCGGGTGC 19201
||||| ||||||||||| || ||| |||| || ||||| || ||
Sbjct 2209133 ATCCCCGCCACCAAGGGCTTTGAGTTTGGTTCTGGCTTTGCCGGAGC 2209087
Score = 89.7 bits (98), Expect = 6e-12
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 1630180 AAGCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATG 1630239
|||||||| || ||||| | |||||||| | || ||| |||||||||||||||||||
Sbjct 398312 AAGCCGATACCTCCGGCGGTTTTGGAGATTTGGGCACACGTTTTGAGCGTGTCGTAGATG 398371
Query 1630240 CCCTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGA 1630283
|| ||||| ||||| || |||| |||| || || || |||||
Sbjct 398372 CCGTCGATGGAGTCTGCTGCCATGGCCACCAGGAAACAGGACGA 398415
>seq1
Length=2339597
Score = 113 bits (124), Expect = 6e-19
Identities = 100/125 (80%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227
|| |||||| | || || |||| || ||||| ||||||||||| ||||| || | ||
Sbjct 1196335 CTGTTTGAGATTATTCTGACCGCAAATTACCTGGACATCAAGCCCCTGCTGGACGTGGGC 1196276
Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287
|||||| | |||||||||||||||||||||||| | ||||||||||| || |||||
Sbjct 1196275 TGCAAGACGGTGGCCAACATGATCAAGGGCAAGACCCCCGAGGAGATTCGACGAACCTTC 1196216
Query 1592288 AACAT 1592292
|||||
Sbjct 1196215 AACAT 1196211
Score = 107 bits (118), Expect = 2e-17
Identities = 154/217 (71%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| |||| || || ||| | | || || || || |||||||||||||| || | ||
Sbjct 993697 GCTTGGCGAGCTCACCGGGGAGAATGAGTCGGACAGCGGTCTGGATCTCTCGAGAAGTGA 993638
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| |||| | || ||||| | |||||||||| ||| || || | |
Sbjct 993637 TGGTGGACTTCTTGGTGTAGGTGGCCAGCTTGGAGGCCTCGGTGGCGACTCGCTCAAAGA 993578
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
||||||||||||| |||||||||| ||||| | | ||||||| || ||| ||||
Sbjct 993577 TGTCGTTGACAAAGGAGTTCATGATAGACATGGCTCGGGTGGAGATACCAGTGTCAGGGT 993518
Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559
| |||||| ||||||||||||||| | || |||||
Sbjct 993517 GGGTCTGCTTCAGCACCTTGTAGATGTAAGAAGAGTA 993481
>seq3
Length=3339761
Score = 91.5 bits (100), Expect = 2e-12
Identities = 200/294 (68%), Gaps = 8/294 (3%)
Strand=Plus/Minus
Query 507581 CTCCAGATCGGGTGGTCGGTCGAGCGCCACCTGCGCGCGGGCGACGCCGTGGTGATGAAC 507640
|| ||| ||| ||| ||| ||||| |||||| | ||| | ||| || | |||
Sbjct 2283648 CTGCAGTACGGCTGGAAGGTGGAGCGGCACCTGATGGACAACGATCCTGTGCTGTTCAAC 2283589
Query 507641 CGGCAGCCGTCGCTGCACATGGGCTCCATGCTCATGCACAAGGTGGTGCC---CATGCCC 507697
|| ||||| |||||||| | |||||| | ||||| | | ||| |||||||
Sbjct 2283588 CGACAGCCCTCGCTGCATAAAATGTCCATGATG--GCACATCGAG-TGCGAGTCATGCCC 2283532
Query 507698 GGGCGCACCATGCGATTCAACCTGGCCGTCACGGGCACCTACAACGCCGACTTTGACGGC 507757
|||| | ||| |||||||| | || || | |||||||||| || || || ||
Sbjct 2283531 TACTCCACCTTTCGACTCAACCTGTCGGTAACATCCCCCTACAACGCTGATTTCGATGGT 2283472
Query 507758 GACGAGATGAACCTGCACGTGCCCCAGTCCGAGACGGCGCGCGCCGAGGTGACGCACACC 507817
||||| |||||| |||| ||||| ||||||||| | || || ||| || |||| |
Sbjct 2283471 GACGAAATGAACTTGCATGTGCCTCAGTCCGAGGAAACTCGAGCTGAGCTGTCGCAG-CT 2283413
Query 507818 ATG-AGCGTGTCGCTCAAGACCGTGTCGCCGCAGGCCAACAAGCCCATCATCGG 507870
|| | || | | ||| ||||| || ||| ||||||||||| |||| ||
Sbjct 2283412 GTGCATGGTTCCTTTGCAGATTGTGTCTCCCCAGTCCAACAAGCCCGTCATGGG 2283359
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107136820124193
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