Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31] 29 sequences; 20,308,363 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq2 221 2e-51 seq6 143 4e-28 seq1 109 9e-18 >seq2 Length=3052417 Score = 221 bits (244), Expect = 2e-51 Identities = 250/332 (75%), Gaps = 5/332 (2%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| || ||| | |||||| ||| |||||| |||||||| || ||||| Sbjct 506903 ACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCAGGCATGAGACCTCGCTT 506962 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||| ||||||| |||| ||| ||||| ||||||||||||||||||||||| Sbjct 506963 CTTGAGCCAGAAGATGGAGGCGAAAGAGCCGGAGAAGAAGATGCCCTCGACGGCGGCAAA 507022 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 | | | ||| ||||| |||| ||| | | || | | ||||||||| | ||||| Sbjct 507023 GGCAATGAGTCGCTCTCCAAAGGTGGACT---CTTCGTCGGAGATCCACTTGAGGGCCCA 507079 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCTTCT 794578 || ||||||||| | | |||| | || ||||||||| || |||| ||| | || Sbjct 507080 GTCGGCCTTTTTCTTGATGCAGGGGATGGTCTCGATGGCGTTGAACAGGTAGGTTCG-CT 507138 Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638 | |||||||||| ||| |||||||| || |||||||||||||| ||||||||||| | Sbjct 507139 CTTTGGGGTCCTTGATGTATGTGTCGATCAGCAGCGAGTAGGTCTCGGAGTGGATGTTCT 507198 Query 794639 CGATGGCGATCTGGAAGCCATAAAAGCAGTTG 794670 | || |||||||||||| || ||||| ||| Sbjct 507199 CCATCATGATCTGGAAGCCGTAGAAGCACTTG 507230 Score = 123 bits (136), Expect = 4e-22 Identities = 195/279 (70%), Gaps = 3/279 (1%) Strand=Plus/Plus Query 796141 AAACACCTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCC 796200 || ||| |||||||||| | || ||||| ||| || | |||||||||| Sbjct 507222 AAGCACTTGGCCTCGGGGGCCTGCACCTCGCCGGAGAATCGCTCAACCAGGTTCTCGTTA 507281 Query 796201 ACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCG 796260 ||||| |||||| ||| || || || ||||| ||||| ||| ||| ||||| ||| Sbjct 507282 ACGATACCGTCGGAGGCAGCAAAGAATGCGAGAACGTGGGAGATGAAGAACCGCTCATCG 507341 Query 796261 TCGCTGAGCGAGA---CCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTC 796317 | | |||| | |||||| || |||| || || || | |||||| || ||| Sbjct 507342 TTGTTGAGTCTGTTCTCCCAGTCACCCATGTCCTTTCCAAGATCAATCTCCTCAGCTGTC 507401 Query 796318 CAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAAC 796377 || || |||||||||||||| |||||||||| ||| || ||||| |||||||||| Sbjct 507402 CAGAAAGAGGCCTCGGCCTTCTTGTACATCTGCCAGATTTCGTGGTACTGGATGGGGAAG 507461 Query 796378 AGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTCG 796416 || ||||| || ||||||| ||||| |||||| Sbjct 507462 AGCACAAACCGTCGATGGTTCTCCTTGAGCAGAGGCTCG 507500 Score = 95.1 bits (104), Expect = 2e-13 Identities = 176/253 (70%), Gaps = 8/253 (3%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || ||| ||| ||| ||||||||||||||||||||| | | Sbjct 506581 TGACACCGGCCTTCTGGTAGTCGGACACTCGCTTCTCGAAAAAGTTGGTCTTGCCGGCCA 506640 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCAC---C 794007 | ||||| |||||| | ||| ||||||| | || || | | || | | | Sbjct 506641 GAGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGG--AGTTA-TACACCTTGGAGTTAC 506697 Query 794008 CGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGT 794067 |||| | | ||||| ||||| ||||| || || |||||||||||||| || ||||| Sbjct 506698 CGAGAGCAACTAGCAGACGGTCAGCGACAAACTCGATGTACTGGCACATCAGCTTGGCGT 506757 Query 794068 TCATGCCGATGAGCGCCAC-GGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACG 794126 |||| || | || |||| |||||| | || | | ||||| | |||||| | || Sbjct 506758 TCATACCAAGCAG-ACCACAGGGCAGAGCGTCAGTAAGGAACTCCTGCTCGATGCCAACA 506816 Query 794127 GCCTCGATGATGA 794139 ||||||| |||| Sbjct 506817 GCCTCGACAATGA 506829 >seq6 Length=3777980 Score = 143 bits (158), Expect = 4e-28 Identities = 325/489 (66%), Gaps = 15/489 (3%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||| || || || || || |||| |||| |||| || ||||||||||| | |||||||| Sbjct 3775472 CTGATCAACGTATCGGGCGGTGTTGTTATAGACACGCAGCATGGGCACGATACCGTTGGA 3775413 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 ||||| || || || | ||||| ||| | || || | ||||| | | || Sbjct 3775412 GGTTCCGTTAGTTCCAGCAATGTAGGAGCCAGTAGCTCGGATGTTGTGGATAGACAGACC 3775353 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||| |||||||| | |||||| || || || || |||| || || ||||||||||| || Sbjct 3775352 GATACCGCCGGCAGACTTGGAAATCAGAGCACAGGTTTTGAGGGTATCGTAGATGCCGTC 3775293 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 ||| |||||| ||||||||| | || || |||||||| | || || | | || || Sbjct 3775292 GATGGAGTCGTCCTTCATGTTGACAAGGAAACACGACGACATCTGAGGCTGGGGAGTTCC 3775233 Query 2073780 GGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGT 2073839 ||| ||| |||| ||||| | || ||| | ||| || ||||| | |||||| Sbjct 3775232 GGCGTTGTAGAGAGTGGGGGAAGCGTGAGTGAAGTACTTCTGAGACATATAGTTGTAGGT 3775173 Query 2073840 GGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGCGAC 2073899 | | | || || | | || |||| || | | |||| | ||| Sbjct 3775172 CTCAATGGCCCGGGCAA-----TGTT----GTCG------CCGTGGATACCGACAGAGAC 3775128 Query 2073900 GCGCATGATCATGTACTGGGGTCGCTCGACGACGGCGTCGCGCACCTTGGTCAGGTAGGA 2073959 ||||||||||| | |||||||||||| | || || || || |||||| | Sbjct 3775127 TCGCATGATCATCTGTTGGGGTCGCTCGGCAACAGCACCGTTGACTCGCAGCAGGTATGC 3775068 Query 2073960 CCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCGGATGGC 2074019 || ||||||| | ||||||||| ||||| | ||| || |||| | | ||||| Sbjct 3775067 TCGCTCCAGGGTCTTGAAGCCAAAGTAGTTGTAGGTGAAGTCTCGGTCGTAGAGAATGGC 3775008 Query 2074020 GGCGTCGAG 2074028 | ||| ||| Sbjct 3775007 GCCGTTGAG 3774999 >seq1 Length=2339597 Score = 109 bits (120), Expect = 9e-18 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 2035629 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGG 2035688 || |||||| | || || |||| || ||||| |||||||||||||| || || |||| Sbjct 1196335 CTGTTTGAGATTATTCTGACCGCAAATTACCTGGACATCAAGCCCCTGCTGGACGTGGGC 1196276 Query 2035689 TGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTT 2035748 |||||||| ||||||||| | |||||||||||| | |||||||| || || ||||| Sbjct 1196275 TGCAAGACGGTGGCCAACATGATCAAGGGCAAGACCCCCGAGGAGATTCGACGAACCTTC 1196216 Query 2035749 AACAT 2035753 ||||| Sbjct 1196215 AACAT 1196211 Score = 107 bits (118), Expect = 3e-17 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 1485504 GGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGT 1485563 ||||||| |||| || || ||| | | || || || || |||||||||||||| || | Sbjct 993702 GGCGTGCTTGGCGAGCTCACCGGGGAGAATGAGTCGGACAGCGGTCTGGATCTCTCGAGA 993643 Query 1485564 GCCGATCGTGTTGCGCTTGTTAGTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTC 1485623 ||| ||| |||| | | ||||| | |||||||||| ||| || || Sbjct 993642 AGTGATGGTGGACTTCTTGGTGTAGGTGGCCAGCTTGGAGGCCTCGGTGGCGACTCGCTC 993583 Query 1485624 GATCATGTCGTTGACAAACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTC 1485683 | |||||||||||||| ||||||||||| ||||| | | | ||||||| || ||| Sbjct 993582 AAAGATGTCGTTGACAAAGGAGTTCATGATAGACATGGCTCGGGTGGAGATACCAGTGTC 993523 Query 1485684 GGGGTGCACCTGCTTGAGCACCTTGTA 1485710 ||||| |||||| ||||||||||| Sbjct 993522 AGGGTGGGTCTGCTTCAGCACCTTGTA 993496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916243315137731