Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31]
29 sequences; 20,308,363 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq6 138 8e-27
seq5 91.5 1e-12
>seq6
Length=3777980
Score = 138 bits (152), Expect = 8e-27
Identities = 670/1055 (64%), Gaps = 12/1055 (1%)
Strand=Plus/Plus
Query 281432 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 281491
|| || || ||||| ||||| || | || || ||||| ||||| || ||||| ||||
Sbjct 3100150 ACGTTGAGGATACCGTTGGCGTCGACGTCGAAGGTGACCTCAATCTGGGGGACACCTCGG 3100209
Query 281492 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAAT 281551
||||||| || || || || | || | || || | || ||||| || ||
Sbjct 3100210 GGAGCAGGGGGAATGCCGGACAGCTCGAACTTACCAAGGATGTTGTTATCCTTGGTCTGG 3100269
Query 281552 TTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTA 281611
||| ||||||||||| | || || || | | || || || | ||||| |
Sbjct 3100270 GCTCGCTCACCCTCGAAGACCTGAATCAGGACACCGGGCTGGTTGTCAGCGTAAGTGGAG 3100329
Query 281612 AATACTCT-GGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAAT 281670
|| ||| ||| || || || || || | ||||| || | ||||||||||
Sbjct 3100330 AAGG-TCTCGGACTTCTTGGTGGGGATGGTGGAGTTTCGGGGGATGAGCTTGGTCATAAC 3100388
Query 281671 ACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTG 281730
|||||| || || || | ||||||||| ||||||| ||||| | |||| || || ||
Sbjct 3100389 ACCACCGGCAGTCTCAATACCAAGAGAGAGAGGAGCAACATCGAGAAGGAGAAGATCCTG 3100448
Query 281731 AAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAAC 281790
| | ||| | || || ||||| || || | |||||||| || |||||
Sbjct 3100449 AGTGGAGGAAGAAGTATCTCCGGAGAGGATAGCGGCCTGGACGGCAGCACCGTAGGCAAC 3100508
Query 281791 AGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAG 281850
||| ||||| || || | | | || | | ||||| ||||| || | || | |||
Sbjct 3100509 AGCCTCATCGGGGTTGATGGATCGGTTGGGCTCCTTACCGTTGAAGAAGTCAGAGACAAG 3100568
Query 281851 TTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTG 281909
| ||| ||||| || || |||| || || || || | || || || | || |
Sbjct 3100569 CT-TCTGGACCTTGGGGATTCGAGTGGAACCACCGACAAGAACGATCTCGTTGACGGCGG 3100627
Query 281910 ATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACA 281969
| || || | || || || | || || || ||||| || ||| | ||| || |
Sbjct 3100628 ACTTGTCGATCTTGGAGTCTCGGAGGACCTTCTCGACGGGCTCGAGAGTACCTCGGAAGA 3100687
Query 281970 AGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCC 282027
|| ||| || || |||||| |||| || || || | || || ||||| ||
Sbjct 3100688 GATCCTGACAGAGCTCCTCGAATCGGGCTCGGGT--GATGGAGGTGTAGAAGTCAATACC 3100745
Query 282028 TTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGC 282087
||| | | ||| || | || || | || || | |||||||| || | || || ||
Sbjct 3100746 CTCGTAGAGAGAGTCGATCTCGATGGAGGTCTGGGCGGAAGAAGACAGGGTTCGCTTGGC 3100805
Query 282088 ACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAATCTGTTTT 282147
|| ||||| || || | | || ||| | ||| |||| ||| | | || | ||
Sbjct 3100806 TCGCTCACAAGCGGTTCGCAATCGTCGGAGAGCTC--GCTGGTTGGTGGAGATATCCTTC 3100863
Query 282148 ATAT--TTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCA 282205
| | || | |||||| || | || | | || || || ||||||||||| |||
Sbjct 3100864 TTGTGCTTACGCTTGAACTCCTGGACGAAGTGGTTGACGAGTCGGTTATCAAAATCCTCA 3100923
Query 282206 CCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGAC 282265
|| || | | || | || | || || | || | ||||| ||||| || | |||
Sbjct 3100924 CCACCAAGATGGGTGTCACCAGCGGTGGCCTTGACCTCGAAAATACCATCCTCGATAGAG 3100983
Query 282266 AAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTG 282325
| || | ||||| ||||| ||||| | ||| || || || || || ||
Sbjct 3100984 AGGAGGGAGACATCGAAAGTTCCTCCACCAAGATCGAAGATGAGAACGTTTCGCTCACCA 3101043
Query 282326 TCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTC 282385
| | || || || ||||| || |||| ||||| || || || || || || |||| |
Sbjct 3101044 GCCTCCTTCTTGTCCAGACCGTAGGCAATGGCAGCTGCGGTAGGCTCGTTGATGATTCGC 3101103
Query 282386 AAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTA 282445
|| || ||||| ||||| || || || || || || |||| || || |||||
Sbjct 3101104 TGGACGTTGAGACCGGCAATAAGACCAGCGTCCTTGGTAGCCTGTCGCTGGGAGTCGTTG 3101163
Query 282446 AAATATGCAGGAACAGTAATAACGGCATCTGTTAC 282480
|| || ||||| ||||| || |||||||| || ||
Sbjct 3101164 AAGTAAGCAGGGACAGTGATGACGGCATCAGTGAC 3101198
>seq5
Length=4047401
Score = 91.5 bits (100), Expect = 1e-12
Identities = 141/201 (70%), Gaps = 3/201 (1%)
Strand=Plus/Plus
Query 282262 AGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTC 282321
||||| ||||| |||||| |||||| ||||| | ||| | | || | | | | ||
Sbjct 1638780 AGACAGAAGAGAAACATCGAAGGTTCCTCCACCAAGATCGTAGACAACAATCTGCTTCTC 1638839
Query 282322 TTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 282381
||| | | | | || || || || |||| || ||||| || || || |||| |||
Sbjct 1638840 ---GTCATCGGTGTGGTCCAGGCCGTAGGCAATGGCGGCAGCGGTGGGCTCGTTAACAAT 1638896
Query 282382 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 282441
|| || ||| || ||||||||||| | || ||||| || ||||| |||| || | |||
Sbjct 1638897 TCGCAGAACGTTGAGACCAGCAATGATACCGGCATCCTTGGTGGCCTGTCGCTGGGCATC 1638956
Query 282442 GTTAAAATATGCAGGAACAGT 282462
||| || || ||||| || ||
Sbjct 1638957 GTTGAAGTAGGCAGGGACGGT 1638977
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740628976222554
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |