Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31] 29 sequences; 20,308,363 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq6 138 8e-27 seq5 91.5 1e-12 >seq6 Length=3777980 Score = 138 bits (152), Expect = 8e-27 Identities = 670/1055 (64%), Gaps = 12/1055 (1%) Strand=Plus/Plus Query 281432 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 281491 || || || ||||| ||||| || | || || ||||| ||||| || ||||| |||| Sbjct 3100150 ACGTTGAGGATACCGTTGGCGTCGACGTCGAAGGTGACCTCAATCTGGGGGACACCTCGG 3100209 Query 281492 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAAT 281551 ||||||| || || || || | || | || || | || ||||| || || Sbjct 3100210 GGAGCAGGGGGAATGCCGGACAGCTCGAACTTACCAAGGATGTTGTTATCCTTGGTCTGG 3100269 Query 281552 TTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTA 281611 ||| ||||||||||| | || || || | | || || || | ||||| | Sbjct 3100270 GCTCGCTCACCCTCGAAGACCTGAATCAGGACACCGGGCTGGTTGTCAGCGTAAGTGGAG 3100329 Query 281612 AATACTCT-GGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAAT 281670 || ||| ||| || || || || || | ||||| || | |||||||||| Sbjct 3100330 AAGG-TCTCGGACTTCTTGGTGGGGATGGTGGAGTTTCGGGGGATGAGCTTGGTCATAAC 3100388 Query 281671 ACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTG 281730 |||||| || || || | ||||||||| ||||||| ||||| | |||| || || || Sbjct 3100389 ACCACCGGCAGTCTCAATACCAAGAGAGAGAGGAGCAACATCGAGAAGGAGAAGATCCTG 3100448 Query 281731 AAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAAC 281790 | | ||| | || || ||||| || || | |||||||| || ||||| Sbjct 3100449 AGTGGAGGAAGAAGTATCTCCGGAGAGGATAGCGGCCTGGACGGCAGCACCGTAGGCAAC 3100508 Query 281791 AGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAG 281850 ||| ||||| || || | | | || | | ||||| ||||| || | || | ||| Sbjct 3100509 AGCCTCATCGGGGTTGATGGATCGGTTGGGCTCCTTACCGTTGAAGAAGTCAGAGACAAG 3100568 Query 281851 TTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTG 281909 | ||| ||||| || || |||| || || || || | || || || | || | Sbjct 3100569 CT-TCTGGACCTTGGGGATTCGAGTGGAACCACCGACAAGAACGATCTCGTTGACGGCGG 3100627 Query 281910 ATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACA 281969 | || || | || || || | || || || ||||| || ||| | ||| || | Sbjct 3100628 ACTTGTCGATCTTGGAGTCTCGGAGGACCTTCTCGACGGGCTCGAGAGTACCTCGGAAGA 3100687 Query 281970 AGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCC 282027 || ||| || || |||||| |||| || || || | || || ||||| || Sbjct 3100688 GATCCTGACAGAGCTCCTCGAATCGGGCTCGGGT--GATGGAGGTGTAGAAGTCAATACC 3100745 Query 282028 TTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGC 282087 ||| | | ||| || | || || | || || | |||||||| || | || || || Sbjct 3100746 CTCGTAGAGAGAGTCGATCTCGATGGAGGTCTGGGCGGAAGAAGACAGGGTTCGCTTGGC 3100805 Query 282088 ACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAATCTGTTTT 282147 || ||||| || || | | || ||| | ||| |||| ||| | | || | || Sbjct 3100806 TCGCTCACAAGCGGTTCGCAATCGTCGGAGAGCTC--GCTGGTTGGTGGAGATATCCTTC 3100863 Query 282148 ATAT--TTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCA 282205 | | || | |||||| || | || | | || || || ||||||||||| ||| Sbjct 3100864 TTGTGCTTACGCTTGAACTCCTGGACGAAGTGGTTGACGAGTCGGTTATCAAAATCCTCA 3100923 Query 282206 CCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGAC 282265 || || | | || | || | || || | || | ||||| ||||| || | ||| Sbjct 3100924 CCACCAAGATGGGTGTCACCAGCGGTGGCCTTGACCTCGAAAATACCATCCTCGATAGAG 3100983 Query 282266 AAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTG 282325 | || | ||||| ||||| ||||| | ||| || || || || || || Sbjct 3100984 AGGAGGGAGACATCGAAAGTTCCTCCACCAAGATCGAAGATGAGAACGTTTCGCTCACCA 3101043 Query 282326 TCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTC 282385 | | || || || ||||| || |||| ||||| || || || || || || |||| | Sbjct 3101044 GCCTCCTTCTTGTCCAGACCGTAGGCAATGGCAGCTGCGGTAGGCTCGTTGATGATTCGC 3101103 Query 282386 AAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTA 282445 || || ||||| ||||| || || || || || || |||| || || ||||| Sbjct 3101104 TGGACGTTGAGACCGGCAATAAGACCAGCGTCCTTGGTAGCCTGTCGCTGGGAGTCGTTG 3101163 Query 282446 AAATATGCAGGAACAGTAATAACGGCATCTGTTAC 282480 || || ||||| ||||| || |||||||| || || Sbjct 3101164 AAGTAAGCAGGGACAGTGATGACGGCATCAGTGAC 3101198 >seq5 Length=4047401 Score = 91.5 bits (100), Expect = 1e-12 Identities = 141/201 (70%), Gaps = 3/201 (1%) Strand=Plus/Plus Query 282262 AGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTC 282321 ||||| ||||| |||||| |||||| ||||| | ||| | | || | | | | || Sbjct 1638780 AGACAGAAGAGAAACATCGAAGGTTCCTCCACCAAGATCGTAGACAACAATCTGCTTCTC 1638839 Query 282322 TTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 282381 ||| | | | | || || || || |||| || ||||| || || || |||| ||| Sbjct 1638840 ---GTCATCGGTGTGGTCCAGGCCGTAGGCAATGGCGGCAGCGGTGGGCTCGTTAACAAT 1638896 Query 282382 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 282441 || || ||| || ||||||||||| | || ||||| || ||||| |||| || | ||| Sbjct 1638897 TCGCAGAACGTTGAGACCAGCAATGATACCGGCATCCTTGGTGGCCTGTCGCTGGGCATC 1638956 Query 282442 GTTAAAATATGCAGGAACAGT 282462 ||| || || ||||| || || Sbjct 1638957 GTTGAAGTAGGCAGGGACGGT 1638977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740628976222554