Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31] 29 sequences; 20,308,363 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq6 251 7e-62 seq2 161 1e-34 seq5 109 5e-19 >seq6 Length=3777980 Score = 251 bits (278), Expect = 7e-62 Identities = 1187/1861 (64%), Gaps = 57/1861 (3%) Strand=Plus/Minus Query 147951 GTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGAC 148010 || ||||| |||||||| || |||||||| ||| | ||| ||||| ||||| || Sbjct 3776839 GTTCGCAGGTAGTACATACCTGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGCATGGAG 3776780 Query 148011 GACATGAGCGTGTAC---GTCGGGTGCGGCACAAACAGATTAAACGACTGGCTCTGGTCA 148067 | ||||| || | || |||| | | | || | ||||| ||||||| Sbjct 3776779 G---TGAGCTTGCCCATGGTAGGGTCCTTGATGTGAATGTTGAGGGACTGAGACTGGTCA 3776723 Query 148068 ATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTATCTTCATCTCCCAGGCC 148127 ||||| | | |||||||||||||| ||||||| |||||| |||||||| | Sbjct 3776722 ATGAAGGGGGATCGGTCAGCGGCCATCTCAATGATTCGCTTCTGAGAAATCTCCCACACG 3776663 Query 148128 GTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGAGCCGCGG 148187 ||||||||||| |||||| | | ||||||| | |||| |||||| || ||| | Sbjct 3776662 GTCTTGTACAGGTCCTTGATTTCCTGGGGAATGTTGGGGATGTTCTGCACGGATCCGTTG 3776603 Query 148188 TGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAGGTCATCG 148247 | |||| ||| | || ||| || | | ||| | ||| | |||||| | | Sbjct 3776602 TCAGCAACAATTCGGTTCTTCATGGTCTCGTTCCACAGGCCAACCTCAACCAGGTCCTTG 3776543 Query 148248 ATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGA-TACACGTT 148306 | ||| | | || || | ||| || || || || || || || || ||| || | ||| Sbjct 3776542 AGCAGCCAGGGGTTGACAATCTGGAATTCACCAGCAAGAACTCGTCG-AGAGTAAATGTT 3776484 Query 148307 GCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGG 148366 | || | || || || |||| ||| || | |||||| | || | || ||||| Sbjct 3776483 GGAAGTGTAGGGCTCGAAGCACTCATTGAAACCAAGAATCTGGGAAGTGGAGGCAGTGGG 3776424 Query 148367 CATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGC 148426 |||| || |||| ||||||||| |||| ||| || | || ||| ||| ||| | Sbjct 3776423 CATGGGAGCGACCAACAGCGAGTTTCGCATACCAGTCTTCATGATCTTGGCCTTGAGATC 3776364 Query 148427 CGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCG 148486 |||| ||||| ||| || || ||||||||||| | ||| |||| || || Sbjct 3776363 GTCCCACTCCCACAGCTCGGAAGGAGTCACGTTCCAGAGATCGAACTGGAGGTCACCCTT 3776304 Query 148487 GCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCT 148546 | || ||| ||||| | | | ||| | |||| | | |||| ||| | Sbjct 3776303 GGAGGCAGGGGAGCCCTGGAAGGTCTCGTAGGCACCGTCCTCAAGAGCCATCTCGTAAGA 3776244 Query 148547 CGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGA 148606 || |||| || |||| ||| || |||||| || || |||||||| | ||| Sbjct 3776243 GGCTTCGACAGCTCCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCTTCTTGGCCTC 3776184 Query 148607 CTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCAC 148666 |||| || | || | || || || || | |||||| || ||||| || |||| Sbjct 3776183 CTCGGACTCAAATGGGAGTCGTAGAGCCATGAAGGTGTCGGCCAGACCCTGGACACCCAG 3776124 Query 148667 GCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTC-TCGAGCGGATAGTGGTTGC 148725 ||||||| |||||| ||||| || | | ||| || ||| |||| ||| | Sbjct 3776123 AGCAATGGGTCGGTGTCGCATGTTAGA-CTTCTTGGCCTCGGGGACCGGGTAGTAGTTTC 3776065 Query 148726 GGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAATTCAA 148785 |||||||||| || || || ||||| | ||||| | ||| | ||||| | | Sbjct 3776064 GGTCGATGATAGCGTTGAGGTTTCGCACAATGACCTTGGCAATGTCGTGCAGCTTCTTGA 3776005 Query 148786 AATCGTA---------CTTGTCATCTACGA--TGCATCGGT--TCACGGCGATAGAGGCT 148832 | ||||| |||| ||| ||| || || || ||||| || || Sbjct 3776004 AGTCGTAGAACGAGTTGGTGTCGTCT-CGAGTAACAAAAGTGGGCAGAGCGATGGAAGCC 3775946 Query 148833 AGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTG 148892 || ||||| || || |||||| || | ||||||||| ||||| |||||| || Sbjct 3775945 AGGTTGCAGACAGCGACCTCATCAGGAGAAGAGTACTCTACAATCTCACAGCACAGGTTA 3775886 Query 148893 CTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTAC 148952 | || || || | |||||| || ||| ||| | |||||| | |||||||||| Sbjct 3775885 GAAGACTTAATTGTTCCGAGGTTCTTCTGGTTGGACTTTCGGTTGCAGGAGTCCTTGTAC 3775826 Query 148953 AGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT---GAACCGATGCAGGTCC 149009 |||||| | || ||| | || ||| || | || | ||| ||| | | Sbjct 3775825 AGCATGAAGGGGTTGCCGGACTCGGTCTGGCAGTCGAGAATGTGGTACC---ACAGCTTC 3775769 Query 149010 TGCGCGCGCACTTGCTGCTCGTAG----CGACCCTCCTGCTCGTATAAAGTATACAGCCG 149065 || || | | || | |||| | || ||||||| |||||| |||||| | Sbjct 3775768 TGGGCAGGGA--TG--GTTCGTCGGCCTCGGCCCTCCTTCTCGTACTGCTCGTACAGCTG 3775713 Query 149066 CTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGA 149125 || ||| | || || ||| ||||| ||||||||||||| || |||||||| || | Sbjct 3775712 CTTAAACTCATCACCATAGACGTCGTCAAGACCGGGGCACTCGTTGGGGCACATCAGGGT 3775653 Query 149126 CCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACAT 149185 ||| | ||| | | || |||| ||| ||||| ||||| | ||| || || | Sbjct 3775652 CCATTCAGCGTTCTGCTCGACTCGCTCCATGAACAGGTCGGGGATCCACAGAGCCAGGAA 3775593 Query 149186 GAGGTCGCGCGCCTTGCA-GTCTTCGGCGCCCATGTTGCGGCGCAGGTTG-AGCACGCTG 149243 ||||| || | || | | ||||| || ||| ||||| | | || || | | Sbjct 3775592 CAGGTCTCG-GGCTCGAATCTCTTCCTTTCCGTGGTTCTTTCGCAGCTCGCAGAACTC-G 3775535 Query 149244 AATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGC---TTGCCG 149300 || || || ||||||| ||||||| ||||| || | || || ||| ||||| Sbjct 3775534 AAGATATCGTCGTGCCAGGGCTCAAGGTACATTGCAAAGGCACCAGGTCGCTTGTTGCCT 3775475 Query 149301 CCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTG 149360 ||||| || |||| || | |||||||| | || || | ||| || | || || || Sbjct 3775474 CCCTGATCAACGTATCGGGCGGTGTTGTTATAGACACGCAGCATGGGCACGATACCGTTG 3775415 Query 149361 GCAGTGCCGTTAG-TAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGAC 149419 | || ||||||| | ||| |||| ||| ||||| | ||||| | | ||| Sbjct 3775414 GAGGTTCCGTTAGTTCCAGC-AATGTAGGAGCCAGTAGCTCGGATGTTGTGGA--TAGAC 3775358 Query 149420 --GCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATG 149477 ||||| |||||| | |||| || || || ||| ||| || ||||||| Sbjct 3775357 AGACCGATACCGCCGGCAGACTTGGAAATCAGAGCACAGGTTTTGAGGGTATCGTAGATG 3775298 Query 149478 CCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGC 149537 || |||||| |||| ||||||| | | || || ||||| |||| || || | Sbjct 3775297 CCGTCGATGGAGTCGTCCTTCATGTTGACAAGGAAACACGACGACATCTGAGGCTGGGGA 3775238 Query 149538 GTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCG 149597 || ||||| | | | |||||| ||||| || || || ||||| ||| | | Sbjct 3775237 GTTCCGGCGTTGTAGAGAGTGGGGGAAGCGTGAGTGAAGTACTTCTGAGACATATAGTTG 3775178 Query 149598 TACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGC 149657 || | ||| | | ||| | |||| ||||| ||||| || | | ||| ||||| | | Sbjct 3775177 TAGGTCTCAATGGCCCGGGCAATGTTGTCGCCGTGGATACCGACAGAGACTCGCATGATC 3775118 Query 149658 ATATGCTGCGGTCGCTCCGCCA---CTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCT 149714 || || || |||||||| || | | ||| | | |||| ||| | || Sbjct 3775117 ATCTGTTGGGGTCGCTCGGCAACAGCACCGTT---GACTCGCAGCAGGTATGCTCGCTCC 3775061 Query 149715 AGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGTCG 149774 || |||||| |||||||||| |||||| ||||| ||| ||| | ||||||| ||| | Sbjct 3775060 AGGGTCTTGAAGCCAAAGTAGTTGTAGGTGAAGTCTCGGTCGTAGAGAATGGCGCCGTTG 3775001 Query 149775 A 149775 | Sbjct 3775000 A 3775000 Score = 120 bits (132), Expect = 3e-22 Identities = 154/209 (74%), Gaps = 5/209 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521 |||||||| ||||| || ||||| ||| | || || || |||||||||||||| | Sbjct 1245180 GTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTTCGGCCG--TCCTCGAGCTGCTTAC 1245123 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || || ||||||||||| || ||||| || |||||||| |||||| || Sbjct 1245122 CGGCGAAGATAAGTCGCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGGACT 1245063 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | |||| ||||| | || |||||| |||| ||||| || ||||| || || | Sbjct 1245062 TGACGTTGTCAATGGTGTCAGAGGACTCCACCTCGAGGGTGATAGTCTTGCCAGTAAGGG 1245003 Query 133642 TTTTTACGAAAATCTGCA-TGGCTTATTT 133669 | || || || || |||| ||| ||| || Sbjct 1245002 TCTTGACAAAGATTTGCACTGGGTTAGTT 1244974 Score = 114 bits (126), Expect = 1e-20 Identities = 146/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521 |||||||| ||||| || ||||| || | || || || |||||||||||||| | Sbjct 1363871 GTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCGGCCG--TCCTCGAGCTGCTTAC 1363814 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || || ||||||||||| || || || || |||||||| |||||| || Sbjct 1363813 CGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACT 1363754 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||||||| | |||||| |||| ||||| || || ||||| || | Sbjct 1363753 TGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTACCGGTAAGGG 1363694 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || ||||||||||| Sbjct 1363693 TCTTGACAAAAATCTGCAT 1363675 >seq2 Length=3052417 Score = 161 bits (178), Expect = 1e-34 Identities = 368/545 (68%), Gaps = 19/545 (3%) Strand=Plus/Plus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || ||| ||| || || ||||| |||||||| || ||||| ||| || ||||| | Sbjct 506594 CTGGTAGTCGGACACTCGCTTCTCGAAAAAGTTGGTCTTGCCGGCCAGAGAGATGTTCTC 506653 Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAG 120470 ||| || ||||| |||||| | | |||| | || | | || | || ||||| Sbjct 506654 CATGAAGTCGAAGGGGTTGGTGGAGTTATACACCTTGGAGTTACCGAGAGCAACTAGCAG 506713 Query 120471 TCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGC 120530 ||||| || |||||||| ||||||| |||||| || |||||||| || |||| | Sbjct 506714 ACGGTCAGCGACAAACTCGATGTACTGGCACATCAGCTTGGCGTTCATACCAAGCAGA-C 506772 Query 120531 CACCGGCAACGCCGAC-GTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGG 120589 ||| || | || | || | ||||||| ||| ||| | || ||||| || ||| Sbjct 506773 CACAGGGCAGAGCGTCAGTAAGGAACTCCTGCTCGATGCCAACAGCCTC---GACAATGA 506829 Query 120590 CGAGCATAGTGTGGCCGGGCATCTTGT--GTTCGATGCGC---GTTCGGTAGTA-CAGGC 120643 || | | | | |||| | ||| | | | || || | | ||||| Sbjct 506830 CGTCCTCAA------CAATCTTCTTTGAGGGTCGGTTCTCAAGGTGCGAGAAAAGCAGGC 506883 Query 120644 ACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGC 120703 | |||||||| |||||||| |||||||| || || || ||||||||| || || |||| Sbjct 506884 AGGCAAAGTCAGTGTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTGAGGC 506943 Query 120704 CGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACA 120763 | ||||||| ||| | |||||| |||| |||| ||| || ||| || ||||| | Sbjct 506944 CAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCGGAGAAGAAGA 507003 Query 120764 CGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCT-GTCG 120822 |||||| ||| ||||||||| | | ||||| | || || | | |||| | | | Sbjct 507004 TGCCCTCGACGGCGGCAAAGGCAATGAGTCGCTCTCCAAAGGTGGAC-TCTTCGTCGGAG 507062 Query 120823 ATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCATCCGCTCGAACGCGTTC 120882 |||||||| | |||||| ||||||||||| | ||| || || ||||| ||||| Sbjct 507063 ATCCACTTGAGGGCCCAGTCGGCCTTTTTCTTGATGCAGGGGATGGTCTCGATGGCGTTG 507122 Query 120883 AGCAG 120887 | ||| Sbjct 507123 AACAG 507127 >seq5 Length=4047401 Score = 109 bits (120), Expect = 5e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 |||||||||||||| || || |||| || ||||||||||| || || || || |||||| Sbjct 2184217 TCCTCGAGCTGCTTACCAGCAAAAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTG 2184158 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||||| ||||| | |||| ||||| | | ||| || |||| |||| | Sbjct 2184157 TCCTGAATCTTGGACTTGACATTATCAATAGTGTCAGAAGACTCAACCTCGAGAGTGATG 2184098 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || |||||||| || |||||||||||||| Sbjct 2184097 GTCTTTCCAGTCAGAGTCTTGACGAAAATCTGCAT 2184063 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 116476 GGCTTCCACGTGCACGAGTTTGGCGACACCAGCAACGGCTGCACCTCCGCCGGCGAACAC 116535 || |||||||| ||||||||||| |||| || |||||||||||| || |||||| ||| Sbjct 1464521 GGATTCCACGTCCACGAGTTTGGTGACAACACCAACGGCTGCACTTCTGCCGGCCCCCAC 1464462 Query 116536 TTCAACCCCACCGGCCAGGACCACGGCGCGCCCAACGCCGCCGTTCGTCACGTCGGTGAC 116595 ||||||||| | || ||||||| | |||| || | | | || ||||| |||||| Sbjct 1464461 TTCAACCCCTTCAAGAAGAACCACGGTGGTCCCACCGACTCTGAGCGACACGTTGGTGAC 1464402 Query 116596 CTGGGCAAC 116604 || || ||| Sbjct 1464401 CTCGGAAAC 1464393 Score = 84.2 bits (92), Expect = 2e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| || || || | | | |||||||||||||| || Sbjct 2184031 GTGGACTCCTTCTGAATGTTGTAGTCAGACAGGGTTCGGCCA-TCCTCGAGCTGCTTACC 2183973 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| || ||||||||||| ||||| || || |||||||| ||||| ||| Sbjct 2183972 GGCGAAAATCAGTCGCTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGAATCTTGGACTT 2183913 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCAC 133612 || | || | ||||||| || ||| || Sbjct 2183912 GACGTTGTCGATGGTGTCGGAGGACTCGAC 2183883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420624759960