Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31]
29 sequences; 20,308,363 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq2 118 1e-21
seq6 102 8e-17
>seq2
Length=3052417
Score = 118 bits (130), Expect = 1e-21
Identities = 325/492 (66%), Gaps = 11/492 (2%)
Strand=Plus/Minus
Query 46773 AAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCACGCTGGCCGAGCGC 46832
||||||||| | |||||| | ||||||||| ||| |||| | | |||||
Sbjct 507091 AAAAAGGCCGACTGGGCCCTCAAGTGGATCTCCGACGAAGAGTCCACCTTTGGAGAGCGA 507032
Query 46833 ATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTTTGCCGCCATTTTT 46892
| | || || || ||||| ||| | || || || ||| ||| ||| |||| ||
Sbjct 507031 CTCATTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCTTTCGCCTCCATCTTC 506972
Query 46893 TACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGC 46952
| | || | ||| | ||||| ||||| || ||| |||||| | ||||| ||
Sbjct 506971 TGGCTCAAGAAGCGAGGTCTCATGCCTGGCCTCACCTTCTCCAACGAGCTCATCTCCCGA 506912
Query 46953 GACGAAGGACTACACACGGACTTTGCGTGTCTCTATTACAAGACGCGCGTGAATGAGAAA 47012
||||| || || ||||| |||||||| || || || | ||| | | ||||||
Sbjct 506911 GACGAGGGTCTGCACACTGACTTTGCCTGCCTGCTTTTCT---CGCACCT---TGAGAAC 506858
Query 47013 TTAAACTCGGACACGATCCT-GAGCATGT--TTAGGGAGGCGGTGAGCATCGAAAAGGAG 47069
| ||| | | ||| | ||| | || || ||||| || ||||||| |||||
Sbjct 506857 CGACCCTCAAAGAAGATTGTTGAGGACGTCATTGTCGAGGCTGTTGGCATCGAGCAGGAG 506798
Query 47070 TTTTTTACTGCGGCGCTGCCC-GTCGCCTTGCTGGGCATGAACGCACAGTCTATGTGCGA 47128
|| |||||| || |||||| || | || ||| || |||||||| || |||||| |
Sbjct 506797 TTCCTTACTGACGCTCTGCCCTGTGGTCT-GCTTGGTATGAACGCCAAGCTGATGTGCCA 506739
Query 47129 ATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTTAA 47188
|| || |||||||| || || |||||| | || ||||| | | || | |||
Sbjct 506738 GTACATCGAGTTTGTCGCTGACCGTCTGCTAGTTGCTCTCGGTAACTCCAAGGTGTATAA 506679
Query 47189 TGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTT 47248
| || || || || || ||| | ||||| || || | ||||| ||||| |||||
Sbjct 506678 CTCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTGGCCGGCAAGACCAACTTTTT 506619
Query 47249 CGAGAAACGAGT 47260
|||||| |||||
Sbjct 506618 CGAGAAGCGAGT 506607
>seq6
Length=3777980
Score = 102 bits (112), Expect = 8e-17
Identities = 963/1539 (63%), Gaps = 59/1539 (4%)
Strand=Plus/Minus
Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGA-TACACATTGCTAGTGAAAGG 146951
||||| | || || || || || || || |||| |||| || | ||| |||| | ||
Sbjct 3776530 TTGACAATCTGGAATTCACCAGCAAGAACTCGTC-GAGAGTAAATGTTGGAAGTGTAGGG 3776472
Query 146952 CTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCAC 147011
||| || ||||||| || | || |||| |||| || || |||||| || ||
Sbjct 3776471 CTCGAAGCACTCATTGAAACCAAGAATCTGGGAAGTGGAGGCAGTGGGCATGGGAGCGAC 3776412
Query 147012 CAACAATGAATTTCGCAGACC-GTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCC 147070
||||| || ||||||| ||| || || | || ||| |||| | | | ||| ||||
Sbjct 3776411 CAACAGCGAGTTTCGCATACCAGTCTTCATG-ATCTTGGCCTTGAGATCGTCCCACTCCC 3776353
Query 147071 ACATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAG--CACTCCTCGACTGGCGGG 147128
||| | || || ||||||||||| | ||| ||||||| ||| | | || ||| ||
Sbjct 3776352 ACAGCTCGGAAGGAGTCACGTTCCAGAGATCGAACTGGAGGTCACCCTTGGA--GGCAGG 3776295
Query 147129 ACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAG 147188
||| ||| || |||| ||||| | |||| || | || ||||
Sbjct 3776294 GGAGCCCTGGAAGGTCTCGTAGGCACCGTCCTCAAGAGCCATCTCGTAAGAGGCTTCGAC 3776235
Query 147189 CGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTC 147248
||||| | ||| ||||| ||| ||| || |||| || | || || ||| |||
Sbjct 3776234 AGCTCCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCTTCTTGGCCTCCTCGGACTC 3776175
Query 147249 GTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGG 147308
| || | || ||| || |||| ||||||| |||||||| ||| | | || ||
Sbjct 3776174 AAATGGGAGTCGTAGAGCCATGAAGGTGTCGGCCAGACCCTGGACACCCAGAGCAATGGG 3776115
Query 147309 TCGATGCTTTTCGT-TGCTGCGCTTCGCG--CTCGCT-ATGGGATAGTGGTTGCGATCAA 147364
||| || ||| || | |||| | |||| | || |||| ||| || || |
Sbjct 3776114 TCGGTG----TCGCATGTTAGACTTCTTGGCCTCGGGGACCGGGTAGTAGTTTCGGTCGA 3776059
Query 147365 TAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTG-AGTTTCTCGAAATCA 147423
| || ||||||||| ||||| | || || | || || || || |||| ||| ||
Sbjct 3776058 TGATAGCGTTGAGGTTTCGCACAATGACCTTGGCAAT-GTCGTGCAGCTTCTTGAAGTCG 3776000
Query 147424 TAA---------GTCCCGTCTTCGACACGTACGCATTG-GTTCACGGCGATAGACGCCAG 147473
|| || ||||| ||| ||| | | | || ||||| || |||||
Sbjct 3775999 TAGAACGAGTTGGTGTCGTCT-CGA---GTAACAAAAGTGGGCAGAGCGATGGAAGCCAG 3775944
Query 147474 ATTGCAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGC 147532
|||||||| || ||| || || | | ||||| || || || |||||||||
Sbjct 3775943 GTTGCAGACAGCGACCTCATCAGGAGAAGA-GTACTCTACAATCTCACAGCACAGGTTAG 3775885
Query 147533 TGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGA 147592
| || || ||| | || | ||| ||| || || ||||| | ||| ||| | |
Sbjct 3775884 AAGACTTAATTGTTCCGAGGTTCTTCTGGTTGGACTTTCGGTTGCAGGAGTCCTTGTACA 3775825
Query 147593 GCATGTACGGTCCGCCGGTCTCGA-CTTGCGTTTCAACGATAAACCTATG------CAGG 147645
||||| | || ||||| |||| || || | ||| || | || |||
Sbjct 3775824 GCATGAAGGGGTTGCCGGACTCGGTCTGGCAGT----CGAGAA---TGTGGTACCACAGC 3775772
Query 147646 TCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGC 147705
| ||| || | | | || |||||||| || |||||| ||||||||| | ||
Sbjct 3775771 TTCTGGGCAGGGATGGTTCGTCGGCCTCGGCCCTCCTTCTCGTACTGCTCGTACAGCTGC 3775712
Query 147706 TCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGAC 147765
| |||||| || || ||| ||| |||| ||||| |||| | || |||||||| | |
Sbjct 3775711 TTAAACTCATCACCATAGACGTCGTCAAGACCGGGGCACTCGTTGGGGCACATCAGGGTC 3775652
Query 147766 CACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATA 147825
|| ||| | | || || ||| ||||| || || | |||||| || |
Sbjct 3775651 CATTCAGCGTTCTGCTCGACTCGCTCCATGAACAGGTCGGGGATCCACAGAGCCAGGAAC 3775592
Query 147826 AGATCGCGCGCTTTGCAATC-CTCGGCGCCCATGTTGCGTTTCAAATTA--AGCACGCTA 147882
|| || || ||| |||| || || || | | || | | || || | |
Sbjct 3775591 AGGTCTCGGGCTCG--AATCTCTTCCTTTCCGTGGTTCTTTCGCAGCTCGCAGAACTCGA 3775534
Query 147883 TAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTT---CCG 147939
|||| ||| |||||||||| |||| ||| | || | ||||| ||||| ||
Sbjct 3775533 -AGATATCGTCGTGCCAGGGCTCAAGGTACATTGCAAAGGCACCAGGTCGCTTGTTGCCT 3775475
Query 147940 CCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTC 147999
||||| || || | || | |||||||| | || |||| |||||| | | ||| |
Sbjct 3775474 CCCTGATCAACGTATCGGGCGGTGTTGTTATAGACACGCAGCATGGGCACGATACCGTTG 3775415
Query 148000 GCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACG 148059
| || ||||| || | || | | ||| ||||| | | ||| | |
Sbjct 3775414 GAGGTTCCGTTAGTTCCAGCAATGTAGGAGCCAGTAGCTCGGATGTTGTGGATAGACAGA 3775355
Query 148060 CCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCG 148119
|| || |||||| | |||| || || ||| || | || ||||||||||
Sbjct 3775354 CCGATACCGCCGGCAGACTTGGAAATCAGAGCACAGGTTTTGAGGGTATCGTAGATGCCG 3775295
Query 148120 TCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTT 148179
|||||| ||||| || | | | | |||||||| |||| || || | |||
Sbjct 3775294 TCGATGGAGTCGTCCTTCATGTTGACAAGGAAACACGACGACATCTGAGGCTGGGGAGTT 3775235
Query 148180 CCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATAC 148239
|| || | | || ||||| ||||| || || | || ||| ||| | ||
Sbjct 3775234 CCGGCGTTGTAGAGAGTGGGGGAAGCGTGAGTGAAGTACTTCTGAGACATATAGTTGTAG 3775175
Query 148240 GTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATG 148299
|||||||| || | |||| ||||||||| || || | | ||| ||||||| |||
Sbjct 3775174 GTCTCAATGGCCCGGGCAATGTTGTCGCCGTGGATACCGACAGAGACTCGCATGATCATC 3775115
Query 148300 TGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTG-AGAAGATATCCATTTTCGAGGGT 148358
|| || ||||| |||||||| | ||||| || | || || ||| | || |||||
Sbjct 3775114 TGTTGGGGTCGCTCGGCAACAGCACCGTTGA-CTCGCAGCAGGTATGCTCGCTCCAGGGT 3775056
Query 148359 TTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTA 148397
||| | |||||||| ||||| || ||| | |||||
Sbjct 3775055 CTTGAAGCCAAAGTAGTTGTAGGTGAAGTCTCGGTCGTA 3775017
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476611027228440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |