Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31] 29 sequences; 20,308,363 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq2 118 1e-21 seq6 102 8e-17 >seq2 Length=3052417 Score = 118 bits (130), Expect = 1e-21 Identities = 325/492 (66%), Gaps = 11/492 (2%) Strand=Plus/Minus Query 46773 AAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCACGCTGGCCGAGCGC 46832 ||||||||| | |||||| | ||||||||| ||| |||| | | ||||| Sbjct 507091 AAAAAGGCCGACTGGGCCCTCAAGTGGATCTCCGACGAAGAGTCCACCTTTGGAGAGCGA 507032 Query 46833 ATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTTTGCCGCCATTTTT 46892 | | || || || ||||| ||| | || || || ||| ||| ||| |||| || Sbjct 507031 CTCATTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCTTTCGCCTCCATCTTC 506972 Query 46893 TACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGC 46952 | | || | ||| | ||||| ||||| || ||| |||||| | ||||| || Sbjct 506971 TGGCTCAAGAAGCGAGGTCTCATGCCTGGCCTCACCTTCTCCAACGAGCTCATCTCCCGA 506912 Query 46953 GACGAAGGACTACACACGGACTTTGCGTGTCTCTATTACAAGACGCGCGTGAATGAGAAA 47012 ||||| || || ||||| |||||||| || || || | ||| | | |||||| Sbjct 506911 GACGAGGGTCTGCACACTGACTTTGCCTGCCTGCTTTTCT---CGCACCT---TGAGAAC 506858 Query 47013 TTAAACTCGGACACGATCCT-GAGCATGT--TTAGGGAGGCGGTGAGCATCGAAAAGGAG 47069 | ||| | | ||| | ||| | || || ||||| || ||||||| ||||| Sbjct 506857 CGACCCTCAAAGAAGATTGTTGAGGACGTCATTGTCGAGGCTGTTGGCATCGAGCAGGAG 506798 Query 47070 TTTTTTACTGCGGCGCTGCCC-GTCGCCTTGCTGGGCATGAACGCACAGTCTATGTGCGA 47128 || |||||| || |||||| || | || ||| || |||||||| || |||||| | Sbjct 506797 TTCCTTACTGACGCTCTGCCCTGTGGTCT-GCTTGGTATGAACGCCAAGCTGATGTGCCA 506739 Query 47129 ATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTTAA 47188 || || |||||||| || || |||||| | || ||||| | | || | ||| Sbjct 506738 GTACATCGAGTTTGTCGCTGACCGTCTGCTAGTTGCTCTCGGTAACTCCAAGGTGTATAA 506679 Query 47189 TGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTT 47248 | || || || || || ||| | ||||| || || | ||||| ||||| ||||| Sbjct 506678 CTCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTGGCCGGCAAGACCAACTTTTT 506619 Query 47249 CGAGAAACGAGT 47260 |||||| ||||| Sbjct 506618 CGAGAAGCGAGT 506607 >seq6 Length=3777980 Score = 102 bits (112), Expect = 8e-17 Identities = 963/1539 (63%), Gaps = 59/1539 (4%) Strand=Plus/Minus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGA-TACACATTGCTAGTGAAAGG 146951 ||||| | || || || || || || || |||| |||| || | ||| |||| | || Sbjct 3776530 TTGACAATCTGGAATTCACCAGCAAGAACTCGTC-GAGAGTAAATGTTGGAAGTGTAGGG 3776472 Query 146952 CTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCAC 147011 ||| || ||||||| || | || |||| |||| || || |||||| || || Sbjct 3776471 CTCGAAGCACTCATTGAAACCAAGAATCTGGGAAGTGGAGGCAGTGGGCATGGGAGCGAC 3776412 Query 147012 CAACAATGAATTTCGCAGACC-GTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCC 147070 ||||| || ||||||| ||| || || | || ||| |||| | | | ||| |||| Sbjct 3776411 CAACAGCGAGTTTCGCATACCAGTCTTCATG-ATCTTGGCCTTGAGATCGTCCCACTCCC 3776353 Query 147071 ACATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAG--CACTCCTCGACTGGCGGG 147128 ||| | || || ||||||||||| | ||| ||||||| ||| | | || ||| || Sbjct 3776352 ACAGCTCGGAAGGAGTCACGTTCCAGAGATCGAACTGGAGGTCACCCTTGGA--GGCAGG 3776295 Query 147129 ACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAG 147188 ||| ||| || |||| ||||| | |||| || | || |||| Sbjct 3776294 GGAGCCCTGGAAGGTCTCGTAGGCACCGTCCTCAAGAGCCATCTCGTAAGAGGCTTCGAC 3776235 Query 147189 CGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTC 147248 ||||| | ||| ||||| ||| ||| || |||| || | || || ||| ||| Sbjct 3776234 AGCTCCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCTTCTTGGCCTCCTCGGACTC 3776175 Query 147249 GTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGG 147308 | || | || ||| || |||| ||||||| |||||||| ||| | | || || Sbjct 3776174 AAATGGGAGTCGTAGAGCCATGAAGGTGTCGGCCAGACCCTGGACACCCAGAGCAATGGG 3776115 Query 147309 TCGATGCTTTTCGT-TGCTGCGCTTCGCG--CTCGCT-ATGGGATAGTGGTTGCGATCAA 147364 ||| || ||| || | |||| | |||| | || |||| ||| || || | Sbjct 3776114 TCGGTG----TCGCATGTTAGACTTCTTGGCCTCGGGGACCGGGTAGTAGTTTCGGTCGA 3776059 Query 147365 TAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTG-AGTTTCTCGAAATCA 147423 | || ||||||||| ||||| | || || | || || || || |||| ||| || Sbjct 3776058 TGATAGCGTTGAGGTTTCGCACAATGACCTTGGCAAT-GTCGTGCAGCTTCTTGAAGTCG 3776000 Query 147424 TAA---------GTCCCGTCTTCGACACGTACGCATTG-GTTCACGGCGATAGACGCCAG 147473 || || ||||| ||| ||| | | | || ||||| || ||||| Sbjct 3775999 TAGAACGAGTTGGTGTCGTCT-CGA---GTAACAAAAGTGGGCAGAGCGATGGAAGCCAG 3775944 Query 147474 ATTGCAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGC 147532 |||||||| || ||| || || | | ||||| || || || ||||||||| Sbjct 3775943 GTTGCAGACAGCGACCTCATCAGGAGAAGA-GTACTCTACAATCTCACAGCACAGGTTAG 3775885 Query 147533 TGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGA 147592 | || || ||| | || | ||| ||| || || ||||| | ||| ||| | | Sbjct 3775884 AAGACTTAATTGTTCCGAGGTTCTTCTGGTTGGACTTTCGGTTGCAGGAGTCCTTGTACA 3775825 Query 147593 GCATGTACGGTCCGCCGGTCTCGA-CTTGCGTTTCAACGATAAACCTATG------CAGG 147645 ||||| | || ||||| |||| || || | ||| || | || ||| Sbjct 3775824 GCATGAAGGGGTTGCCGGACTCGGTCTGGCAGT----CGAGAA---TGTGGTACCACAGC 3775772 Query 147646 TCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGC 147705 | ||| || | | | || |||||||| || |||||| ||||||||| | || Sbjct 3775771 TTCTGGGCAGGGATGGTTCGTCGGCCTCGGCCCTCCTTCTCGTACTGCTCGTACAGCTGC 3775712 Query 147706 TCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGAC 147765 | |||||| || || ||| ||| |||| ||||| |||| | || |||||||| | | Sbjct 3775711 TTAAACTCATCACCATAGACGTCGTCAAGACCGGGGCACTCGTTGGGGCACATCAGGGTC 3775652 Query 147766 CACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATA 147825 || ||| | | || || ||| ||||| || || | |||||| || | Sbjct 3775651 CATTCAGCGTTCTGCTCGACTCGCTCCATGAACAGGTCGGGGATCCACAGAGCCAGGAAC 3775592 Query 147826 AGATCGCGCGCTTTGCAATC-CTCGGCGCCCATGTTGCGTTTCAAATTA--AGCACGCTA 147882 || || || ||| |||| || || || | | || | | || || | | Sbjct 3775591 AGGTCTCGGGCTCG--AATCTCTTCCTTTCCGTGGTTCTTTCGCAGCTCGCAGAACTCGA 3775534 Query 147883 TAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTT---CCG 147939 |||| ||| |||||||||| |||| ||| | || | ||||| ||||| || Sbjct 3775533 -AGATATCGTCGTGCCAGGGCTCAAGGTACATTGCAAAGGCACCAGGTCGCTTGTTGCCT 3775475 Query 147940 CCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTC 147999 ||||| || || | || | |||||||| | || |||| |||||| | | ||| | Sbjct 3775474 CCCTGATCAACGTATCGGGCGGTGTTGTTATAGACACGCAGCATGGGCACGATACCGTTG 3775415 Query 148000 GCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACG 148059 | || ||||| || | || | | ||| ||||| | | ||| | | Sbjct 3775414 GAGGTTCCGTTAGTTCCAGCAATGTAGGAGCCAGTAGCTCGGATGTTGTGGATAGACAGA 3775355 Query 148060 CCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCG 148119 || || |||||| | |||| || || ||| || | || |||||||||| Sbjct 3775354 CCGATACCGCCGGCAGACTTGGAAATCAGAGCACAGGTTTTGAGGGTATCGTAGATGCCG 3775295 Query 148120 TCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTT 148179 |||||| ||||| || | | | | |||||||| |||| || || | ||| Sbjct 3775294 TCGATGGAGTCGTCCTTCATGTTGACAAGGAAACACGACGACATCTGAGGCTGGGGAGTT 3775235 Query 148180 CCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATAC 148239 || || | | || ||||| ||||| || || | || ||| ||| | || Sbjct 3775234 CCGGCGTTGTAGAGAGTGGGGGAAGCGTGAGTGAAGTACTTCTGAGACATATAGTTGTAG 3775175 Query 148240 GTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATG 148299 |||||||| || | |||| ||||||||| || || | | ||| ||||||| ||| Sbjct 3775174 GTCTCAATGGCCCGGGCAATGTTGTCGCCGTGGATACCGACAGAGACTCGCATGATCATC 3775115 Query 148300 TGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTG-AGAAGATATCCATTTTCGAGGGT 148358 || || ||||| |||||||| | ||||| || | || || ||| | || ||||| Sbjct 3775114 TGTTGGGGTCGCTCGGCAACAGCACCGTTGA-CTCGCAGCAGGTATGCTCGCTCCAGGGT 3775056 Query 148359 TTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTA 148397 ||| | |||||||| ||||| || ||| | ||||| Sbjct 3775055 CTTGAAGCCAAAGTAGTTGTAGGTGAAGTCTCGGTCGTA 3775017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476611027228440