Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31]
29 sequences; 20,308,363 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq2 271 1e-66
seq6 145 1e-28
seq1 96.9 5e-14
>seq2
Length=3052417
Score = 271 bits (300), Expect = 1e-66
Identities = 408/568 (72%), Gaps = 14/568 (2%)
Strand=Plus/Minus
Query 1455715 CGAGCCGCTGCTGCGCGATAACC--CGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAG 1455772
|||||| ||||| || |||| ||| || ||||| || |||||||||| |||||
Sbjct 507500 CGAGCCTCTGCTCAAGGAGAACCATCGA--CGGTTTGTGCTCTTCCCCATCCAGTACCAC 507443
Query 1455773 CGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGA 1455832
|| ||| | |||||| || |||||||||||||| || ||||| || |||||| | ||
Sbjct 507442 GAAATCTGGCAGATGTAC-AAGAAGGCCGAGGCCTCTTTCTGGACAGCTGAGGAGATTGA 507384
Query 1455833 CCTCGGCGCCGACACGGTCCACTGGGTGTCG---CTGAGCGACGACGAGCGCCATTTCAT 1455889
|| || |||| || |||||| | || | | |||| ||||| |||||
Sbjct 507383 TCTTGGAAAGGACATGGGTGACTGGGAGAACAGACTCAACAACGATGAGCGGTTCTTCAT 507324
Query 1455890 CAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCG 1455949
| ||||| ||||| || ||| || ||| ||| || ||||| ||||||||||| |
Sbjct 507323 CTCCCACGTTCTCGCATTCTTT-GCTGCCTCCGACGGTATCGTTAACGAGAACCTGGTTG 507265
Query 1455950 GCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCG 1456009
|| || ||||| || || ||||| | || ||||| |||||||||
Sbjct 507264 AGCGATTCTCCGGCGAGGTGCAGGCCCCCGAGGCCAAGTGCTTCTACGGCTTCCAGATCA 507205
Query 1456010 CCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACC 1456069
|| || ||||||||||| || ||||||||||| ||||||||||| ||| |||||||||
Sbjct 507204 TGATGGAGAACATCCACTCCGAGACCTACTCGCTGCTGATCGACACATACATCAAGGACC 507145
Query 1456070 CGGTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAG 1456128
| ||| | ||| |||| || ||||||||| || | || | | | |||||||
Sbjct 507144 CCAAAGAGC-GAACCTACCTGTTCAACGCCATCGAGACCATCCCCTGCATCAAGAAAAAG 507086
Query 1456129 GCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCG 1456188
||||||||||| | ||||||||| | | || | || || ||||| ||||| |||
Sbjct 507085 GCCGACTGGGCCCTCAAGTGGATCTCCGACGA-AGAGTCCAC-CTTTGGAGAGCGACTCA 507028
Query 1456189 TCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGC 1456247
| | |||||||| ||||||||||||||| ||||| ||| |||| | ||||||| ||||
Sbjct 507027 TTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCTTTCGCCTCCATCTTCTGGC 506968
Query 1456248 TCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275
|||||||||| || |||||||| || ||
Sbjct 506967 TCAAGAAGCGAGGTCTCATGCCTGGCCT 506940
>seq6
Length=3777980
Score = 145 bits (160), Expect = 1e-28
Identities = 207/289 (72%), Gaps = 2/289 (1%)
Strand=Plus/Plus
Query 259895 ATGTCGCAGCAGTTGTTCACCTCA-GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCG 259953
||||| ||| ||| ||||| ||| || | ||||| |||| || ||||| || || |
Sbjct 3775185 ATGTCTCAGAAGTACTTCAC-TCACGCTTCCCCCACTCTCTACAACGCCGGAACTCCCCA 3775243
Query 259954 CCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTA 260013
|| |||| |||||||| || || | ||||||||| ||| || ||||| ||||||||
Sbjct 3775244 GCCTCAGATGTCGTCGTGTTTCCTTGTCAACATGAAGGACGACTCCATCGACGGCATCTA 3775303
Query 260014 TGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGC 260073
|| || ||||| || || || || |||||| | |||||||| |||||| | |
Sbjct 3775304 CGATACCCTCAAAACCTGTGCTCTGATTTCCAAGTCTGCCGGCGGTATCGGTCTGTCTAT 3775363
Query 260074 ACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCT 260133
||||| | || || | ||| ||||| | || || || ||||| |||||||| |
Sbjct 3775364 CCACAACATCCGAGCTACTGGCTCCTACATTGCTGGAACTAACGGAACCTCCAACGGTAT 3775423
Query 260134 TGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182
||||||||||| || || | |||| |||| || || ||||| || |||
Sbjct 3775424 CGTGCCCATGCTGCGTGTCTATAACAACACCGCCCGATACGTTGATCAG 3775472
>seq1
Length=2339597
Score = 96.9 bits (106), Expect = 5e-14
Identities = 159/228 (70%), Gaps = 6/228 (3%)
Strand=Plus/Plus
Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958
||||| || | |||||||||||||| |||||| ||||| || | | |||
Sbjct 993481 TACTCTTCTTACATCTACAAGGTGCTGAAGCAGACCCACCCTGACACTGGT-----ATC- 993534
Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018
|||| | ||||||| ||||||||||| |||||||||||||| | || || ||| |
Sbjct 993535 TCCACCCGAGCCATGTCTATCATGAACTCCTTTGTCAACGACATCTTTGAGCGAGTCGCC 993594
Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078
||||||||| ||||| || || |||| ||| ||| | || ||||||
Sbjct 993595 ACCGAGGCCTCCAAGCTGGCCACCTACACCAAGAAGTCCACCATCACTTCTCGAGAGATC 993654
Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCC 725126
|||||||| || || || || | | ||| || || |||| |||||||
Sbjct 993655 CAGACCGCTGTCCGACTCATTCTCCCCGGTGAGCTCGCCAAGCACGCC 993702
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177808402896698
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |