Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31]
29 sequences; 20,308,363 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq6 125 7e-24
seq5 96.9 4e-15
>seq6
Length=3777980
Score = 125 bits (138), Expect = 7e-24
Identities = 165/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| |||| ||||||| ||||| || || ||||| ||||| || ||||||||||| |
Sbjct 1363901 CCACCTCGAAGTCGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 1363842
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| ||| | ||| |||||||| || || || || || | |||||||| || || ||
Sbjct 1363841 AGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 1363782
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|| || || || || || || || ||||| ||| | |||||||| || |||||
Sbjct 1363781 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 1363722
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTT 134715
||||| || || || |||||||| | || || || ||||| |||||||
Sbjct 1363721 TCGAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATTT 1363673
Score = 114 bits (126), Expect = 1e-20
Identities = 161/226 (71%), Gaps = 0/226 (0%)
Strand=Plus/Minus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
||||||| |||||||| ||||| || || ||||| ||||| || |||||||||||| |
Sbjct 1245210 CCTCCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAA 1245151
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| || | ||| |||||||| || || || || || | |||||||| || || ||
Sbjct 1245150 AGAGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGG 1245091
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|| || || || || || || || ||||| ||| | ||||| || || |||||
Sbjct 1245090 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCCACC 1245031
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCA 134712
||||| || || || || || || | || || || || |||||||
Sbjct 1245030 TCGAGGGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 1244985
>seq5
Length=4047401
Score = 96.9 bits (106), Expect = 4e-15
Identities = 140/197 (71%), Gaps = 2/197 (1%)
Strand=Plus/Minus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| |||| |||||| | ||||| || || ||||| ||||| ||||||||||||||
Sbjct 2184061 CCACCTCGGAGTCGGAGAACGAGATGGAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAC 2184002
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| ||| | || |||||||| || || || ||||||| |||||||| || || ||
Sbjct 2184001 AGGGTTCGGCCATCCTCGAGCTGCTTACCGGCGAAAATCAGTCGCTGCTGGTCCGGAGGA 2183942
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC- 134665
|| || || || || ||||| || ||||| ||| | |||||||| || || ||
Sbjct 2183941 ATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAGGACTCGACC 2183882
Query 134666 -GTCGAGAGTAATGGTT 134681
|| | ||||||| ||
Sbjct 2183881 TGTTGTTAGTAATGTTT 2183865
Score = 91.5 bits (100), Expect = 1e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| |||| |||||| | ||||| || || ||||| ||||| || |||||||||||| |
Sbjct 2184463 CCACCTCGGAGTCGAAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAA 2184404
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| || | || |||||||| || || |||||||||| |||||||| || || ||
Sbjct 2184403 AGAGTTCGGCCATCCTCGAGCTGCTTACCAGCAAAAATCAGTCGCTGCTGGTCCGGGGGA 2184344
Query 134607 ATGCCTTCTTTTTCTTGAATTTT 134629
|| || || || || ||||| ||
Sbjct 2184343 ATTCCCTCCTTGTCCTGAATCTT 2184321
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505398216793080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |