Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31] 29 sequences; 20,308,363 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq6 181 1e-40 seq2 138 2e-27 seq4 120 4e-22 >seq6 Length=3777980 Score = 181 bits (200), Expect = 1e-40 Identities = 461/699 (66%), Gaps = 2/699 (0%) Strand=Plus/Minus Query 69520 AATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCAC 69579 || ||||| || | || || || | || || || || || || ||||||| | ||| Sbjct 3775708 AACTCATCACCATAGACGTCGTCAAGACCGGGGCACTCGTTGGGGCACATCAGGGTCCAT 3775649 Query 69580 ACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGA 69639 || | | | || ||||| | ||| || || ||||| ||||| ||||| | || || Sbjct 3775648 TCAGCGTTCTGCTCGACTCGCTCCATGAACAGGTCGGGGATCCACAGAGCCAGGAACAGG 3775589 Query 69640 TCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATA 69699 |||| || || | | ||||| ||||| || ||| || ||| ||||| | ||| Sbjct 3775588 TCTCGGGCTCGAATCTCTTCCTTTCCGTGGTTCTTTCGCAGCTCGCAGAACTCGAAGATA 3775529 Query 69700 TCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGA 69759 || ||||| || || || || || || | | | || ||||| || || ||||||||| Sbjct 3775528 TCGTCGTGCCAGGGCTCAAGGTACATTGCAAAGGCACCAGGTCGCTTGTTGCCTCCCTGA 3775469 Query 69760 TCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTA 69819 || | ||||| ||| ||||| |||||||| | |||||| || | ||||| || || | Sbjct 3775468 TCAACGTATCGGGCGGTGTTGTTATAGACACGCAGCATGGGCACGATACCGTTGGAGGTT 3775409 Query 69820 CCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATT 69879 || || ||||||| ||| || || | || || || || ||||| ||||| || Sbjct 3775408 CCGTTAGTTCCAGCAATGTAGGAGCCAGTAGCTCGGATGTTGTGGATAGACAGACCGATA 3775349 Query 69880 CCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATG 69939 || || || || || || |||||||| ||| | || || || || || || ||| Sbjct 3775348 CCGCCGGCAGACTTGGAAATCAGAGCACAGGTTTTGAGGGTATCGTAGATGCCGTCGATG 3775289 Query 69940 CTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCA 69999 || || ||||||| | ||| ||||| ||||| ||| | || |||||| || Sbjct 3775288 GAGTCGTCCTTCATGTTGACAAGGAAACACGACGACATCTGAGGCTGGGGAGTTCCGGCG 3775229 Query 70000 TTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCA 70059 || | | || || || ||||||||||| | || | ||| | ||||| || ||| Sbjct 3775228 TTGTAGAGAGTGGGGGAAGCGTGAGTGAAGTACTTCTGAGACATATAGTTGTAGGTCTCA 3775169 Query 70060 ATAGCTGATTCTAT-ATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTG 70118 || || | || | | | | || || || | | ||| ||||| | ||| || || Sbjct 3775168 ATGGCCCGGGCAATGTTGTCGCCG-TGGATACCGACAGAGACTCGCATGATCATCTGTTG 3775110 Query 70119 AGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAA 70178 ||||| || | | || | | || |||||||| | ||||| || || || Sbjct 3775109 GGGTCGCTCGGCAACAGCACCGTTGACTCGCAGCAGGTATGCTCGCTCCAGGGTCTTGAA 3775050 Query 70179 CCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||| |||||||| | ||||||| ||||| | ||| Sbjct 3775049 GCCAAAGTAGTTGTAGGTGAAGTCTCGGTCGTAGAGAAT 3775011 >seq2 Length=3052417 Score = 138 bits (152), Expect = 2e-27 Identities = 384/588 (65%), Gaps = 6/588 (1%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||| |||||| || || ||||| |||| || | ||||| || || ||||| Sbjct 506882 GCAGGCAAAGTCAGTGTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTGAG 506941 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 |||||||| ||||| ||||| |||||||| || |||| || ||||| || || ||||| Sbjct 506942 GCCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCGGAGAAGAA 507001 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTAT---G 39792 |||||| || || || ||||| |||| |||| |||||| | | | || | | Sbjct 507002 GATGCCCTCGACGGCGGCAAAGGCAATGAGTCGCTCTCCAAAGGTGGACTCTTCGTCGGA 507061 Query 39793 TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 39852 |||||||| | ||||| || || || ||||| | || || || || || || || || Sbjct 507062 GATCCACTTGAGGGCCCAGTCGGCCTTTTTCTTGATGCAGGGGATGGTCTCGATGGCGTT 507121 Query 39853 AAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACAT 39912 || || || | || | || || | ||||| || || | ||| || | Sbjct 507122 GAACAGGTAGGTTCGCTCTTTGGGGTCCTTGATGTATGTGTCGATCAGCAGCGAGTAGGT 507181 Query 39913 TTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 39972 || || |||||||| || ||| ||||| || ||||| || || | || || | Sbjct 507182 CTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCCTCGGGGGC 507241 Query 39973 TTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGC 40032 || ||||| | |||| || ||| || || || || || || || || || Sbjct 507242 CTGCACCTCGCCGGAGAATCGCTCAACCAGGTTCTCGTTAACGATACCGTCGGAGGCAGC 507301 Query 40033 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAAT---TTATTCCA 40089 ||| ||||| | || || || || | |||||| | | | || | ||| Sbjct 507302 AAAGAATGCGAGAACGTGGGAGATGAAGAACCGCTCATCGTTGTTGAGTCTGTTCTCCCA 507361 Query 40090 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTT 40149 |||| || || ||| | ||| | || ||||||||||| || || ||||| ||||| Sbjct 507362 GTCACCCATGTCCTTTCCAAGATCAATCTCCTCAGCTGTCCAGAAAGAGGCCTCGGCCTT 507421 Query 40150 TTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAA 40197 |||||||| | ||| || || | || || || || || | ||||| Sbjct 507422 CTTGTACATCTGCCAGATTTCGTGGTACTGGATGGGGAAGAGCACAAA 507469 >seq4 Length=3654803 Score = 120 bits (132), Expect = 4e-22 Identities = 453/700 (65%), Gaps = 18/700 (3%) Strand=Plus/Plus Query 69514 CGTTCGAATTCATCTCCCCAAACATCATCCAATCC--AGGACATTCATTTGGACACATCA 69571 || |||||||| |||||||||||||| ||| || || | ||| | ||||| | | Sbjct 397955 CGGTCGAATTCCTCTCCCCAAACATCGGCCAGACCTGGGGCCTTTC--TGGGACAGAAAA 398012 Query 69572 ATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTA 69631 |||||| || ||| || ||| |||||| || || || | ||| | || Sbjct 398013 GAGACCACTTTTCGCCATTCTCGACTTTGCGCATAAACAGGTCAGGCACCCATAAGGCGT 398072 Query 69632 TAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACT 69691 ||||| || | || || |||||| || || ||||| |||| || || | Sbjct 398073 AGAAGAGGTCACGGGCTCGATTTTCCTCGGCACCATGGTTTTTGCGCAGATTCAGGAAAT 398132 Query 69692 CCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTC 69751 ||| ||| || | |||||| || || | ||| | || | |||| || ||||| |||| Sbjct 398133 CCAAAATGTCTGCATGCCAGGGCTCCAAATACACTGCAAACGCTCCTGGACGTTTGTTTC 398192 Query 69752 CTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCAT 69811 |||| || || | ||| | |||||||| || | ||||| ||||| |||| || || Sbjct 398193 CTCCTTGGTCCACGTACCGAGCAGTGTTGTTGAACACTCTGAGCATAGGAACGATTCCGG 398252 Query 69812 TAGATTTACCATTTGTTCCAGAAAT-ATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 ||| | || | | |||| ||| | | || ||| | || | ||| || ||| Sbjct 398253 AGGATCTTCCTTGAGACCCAGTAATGAGAGCTCCCT-TGGCTCTAATGTTGTGGATATGC 398311 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | || || ||||| || |||| |||||| | ||||| ||| | ||||| || || Sbjct 398312 AAGCCGATACCTCCGGCGGTTTTGGAGATTTGGGCACACGTTTTGAGCGTGTCGTAGATG 398371 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATA 69990 || || ||| || || |||| | || |||||| || | ||| || Sbjct 398372 CCGTCGATGGAGTCTGCTGCCATGGCCACCAGGAAACAGGACGAAAGTTGGCCCTGGGGG 398431 Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAG-CAGA-- 70047 ||||| ||||| || || |||||||| || || ||||| ||||| || | |||| Sbjct 398432 GTTCCTGCATTGAACAAAGTAGGAGACGCATGTGTGAA----TTTTCTGAGCGACAGAGC 398487 Query 70048 -TTGTATGTTTCAATAGCTGATTCTATATCCCA-CT-GATGAATTCCTATCGCGACACGC 70104 | ||| ||||| || || | || || || ||| || || | || || ||| Sbjct 398488 CTGGTAGGTTTC--GCGCACCTTGAAAATATCATCTCCATGGATGCCCAGGGCCACTCGC 398545 Query 70105 ATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTT 70164 ||||||||||| |||||||| || ||| || | | |||| | |||||| || Sbjct 398546 ATCAACATATGTTGAGGTCGCTCCACCACGTTTCCGCCAACTCTCAATAAGTATGACTTC 398605 Query 70165 TCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTC 70204 ||||| || || || ||||| ||| ||| | | ||||| Sbjct 398606 TCCAGGGTCTTGAATCCAAAGTAGGAGTAAGTCATGTCTC 398645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908550995560