Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31]
29 sequences; 20,308,363 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq6 181 1e-40
seq2 138 2e-27
seq4 120 4e-22
>seq6
Length=3777980
Score = 181 bits (200), Expect = 1e-40
Identities = 461/699 (66%), Gaps = 2/699 (0%)
Strand=Plus/Minus
Query 69520 AATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCAC 69579
|| ||||| || | || || || | || || || || || || ||||||| | |||
Sbjct 3775708 AACTCATCACCATAGACGTCGTCAAGACCGGGGCACTCGTTGGGGCACATCAGGGTCCAT 3775649
Query 69580 ACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGA 69639
|| | | | || ||||| | ||| || || ||||| ||||| ||||| | || ||
Sbjct 3775648 TCAGCGTTCTGCTCGACTCGCTCCATGAACAGGTCGGGGATCCACAGAGCCAGGAACAGG 3775589
Query 69640 TCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATA 69699
|||| || || | | ||||| ||||| || ||| || ||| ||||| | |||
Sbjct 3775588 TCTCGGGCTCGAATCTCTTCCTTTCCGTGGTTCTTTCGCAGCTCGCAGAACTCGAAGATA 3775529
Query 69700 TCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGA 69759
|| ||||| || || || || || || | | | || ||||| || || |||||||||
Sbjct 3775528 TCGTCGTGCCAGGGCTCAAGGTACATTGCAAAGGCACCAGGTCGCTTGTTGCCTCCCTGA 3775469
Query 69760 TCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTA 69819
|| | ||||| ||| ||||| |||||||| | |||||| || | ||||| || || |
Sbjct 3775468 TCAACGTATCGGGCGGTGTTGTTATAGACACGCAGCATGGGCACGATACCGTTGGAGGTT 3775409
Query 69820 CCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATT 69879
|| || ||||||| ||| || || | || || || || ||||| ||||| ||
Sbjct 3775408 CCGTTAGTTCCAGCAATGTAGGAGCCAGTAGCTCGGATGTTGTGGATAGACAGACCGATA 3775349
Query 69880 CCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATG 69939
|| || || || || || |||||||| ||| | || || || || || || |||
Sbjct 3775348 CCGCCGGCAGACTTGGAAATCAGAGCACAGGTTTTGAGGGTATCGTAGATGCCGTCGATG 3775289
Query 69940 CTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCA 69999
|| || ||||||| | ||| ||||| ||||| ||| | || |||||| ||
Sbjct 3775288 GAGTCGTCCTTCATGTTGACAAGGAAACACGACGACATCTGAGGCTGGGGAGTTCCGGCG 3775229
Query 70000 TTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCA 70059
|| | | || || || ||||||||||| | || | ||| | ||||| || |||
Sbjct 3775228 TTGTAGAGAGTGGGGGAAGCGTGAGTGAAGTACTTCTGAGACATATAGTTGTAGGTCTCA 3775169
Query 70060 ATAGCTGATTCTAT-ATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTG 70118
|| || | || | | | | || || || | | ||| ||||| | ||| || ||
Sbjct 3775168 ATGGCCCGGGCAATGTTGTCGCCG-TGGATACCGACAGAGACTCGCATGATCATCTGTTG 3775110
Query 70119 AGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAA 70178
||||| || | | || | | || |||||||| | ||||| || || ||
Sbjct 3775109 GGGTCGCTCGGCAACAGCACCGTTGACTCGCAGCAGGTATGCTCGCTCCAGGGTCTTGAA 3775050
Query 70179 CCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217
||||| |||||||| | ||||||| ||||| | |||
Sbjct 3775049 GCCAAAGTAGTTGTAGGTGAAGTCTCGGTCGTAGAGAAT 3775011
>seq2
Length=3052417
Score = 138 bits (152), Expect = 2e-27
Identities = 384/588 (65%), Gaps = 6/588 (1%)
Strand=Plus/Plus
Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675
|||||| |||||| || || ||||| |||| || | ||||| || || |||||
Sbjct 506882 GCAGGCAAAGTCAGTGTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTGAG 506941
Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735
|||||||| ||||| ||||| |||||||| || |||| || ||||| || || |||||
Sbjct 506942 GCCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCGGAGAAGAA 507001
Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTAT---G 39792
|||||| || || || ||||| |||| |||| |||||| | | | || | |
Sbjct 507002 GATGCCCTCGACGGCGGCAAAGGCAATGAGTCGCTCTCCAAAGGTGGACTCTTCGTCGGA 507061
Query 39793 TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 39852
|||||||| | ||||| || || || ||||| | || || || || || || || ||
Sbjct 507062 GATCCACTTGAGGGCCCAGTCGGCCTTTTTCTTGATGCAGGGGATGGTCTCGATGGCGTT 507121
Query 39853 AAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACAT 39912
|| || || | || | || || | ||||| || || | ||| || |
Sbjct 507122 GAACAGGTAGGTTCGCTCTTTGGGGTCCTTGATGTATGTGTCGATCAGCAGCGAGTAGGT 507181
Query 39913 TTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 39972
|| || |||||||| || ||| ||||| || ||||| || || | || || |
Sbjct 507182 CTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCCTCGGGGGC 507241
Query 39973 TTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGC 40032
|| ||||| | |||| || ||| || || || || || || || || ||
Sbjct 507242 CTGCACCTCGCCGGAGAATCGCTCAACCAGGTTCTCGTTAACGATACCGTCGGAGGCAGC 507301
Query 40033 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAAT---TTATTCCA 40089
||| ||||| | || || || || | |||||| | | | || | |||
Sbjct 507302 AAAGAATGCGAGAACGTGGGAGATGAAGAACCGCTCATCGTTGTTGAGTCTGTTCTCCCA 507361
Query 40090 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTT 40149
|||| || || ||| | ||| | || ||||||||||| || || ||||| |||||
Sbjct 507362 GTCACCCATGTCCTTTCCAAGATCAATCTCCTCAGCTGTCCAGAAAGAGGCCTCGGCCTT 507421
Query 40150 TTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAA 40197
|||||||| | ||| || || | || || || || || | |||||
Sbjct 507422 CTTGTACATCTGCCAGATTTCGTGGTACTGGATGGGGAAGAGCACAAA 507469
>seq4
Length=3654803
Score = 120 bits (132), Expect = 4e-22
Identities = 453/700 (65%), Gaps = 18/700 (3%)
Strand=Plus/Plus
Query 69514 CGTTCGAATTCATCTCCCCAAACATCATCCAATCC--AGGACATTCATTTGGACACATCA 69571
|| |||||||| |||||||||||||| ||| || || | ||| | ||||| | |
Sbjct 397955 CGGTCGAATTCCTCTCCCCAAACATCGGCCAGACCTGGGGCCTTTC--TGGGACAGAAAA 398012
Query 69572 ATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTA 69631
|||||| || ||| || ||| |||||| || || || | ||| | ||
Sbjct 398013 GAGACCACTTTTCGCCATTCTCGACTTTGCGCATAAACAGGTCAGGCACCCATAAGGCGT 398072
Query 69632 TAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACT 69691
||||| || | || || |||||| || || ||||| |||| || || |
Sbjct 398073 AGAAGAGGTCACGGGCTCGATTTTCCTCGGCACCATGGTTTTTGCGCAGATTCAGGAAAT 398132
Query 69692 CCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTC 69751
||| ||| || | |||||| || || | ||| | || | |||| || ||||| ||||
Sbjct 398133 CCAAAATGTCTGCATGCCAGGGCTCCAAATACACTGCAAACGCTCCTGGACGTTTGTTTC 398192
Query 69752 CTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCAT 69811
|||| || || | ||| | |||||||| || | ||||| ||||| |||| || ||
Sbjct 398193 CTCCTTGGTCCACGTACCGAGCAGTGTTGTTGAACACTCTGAGCATAGGAACGATTCCGG 398252
Query 69812 TAGATTTACCATTTGTTCCAGAAAT-ATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870
||| | || | | |||| ||| | | || ||| | || | ||| || |||
Sbjct 398253 AGGATCTTCCTTGAGACCCAGTAATGAGAGCTCCCT-TGGCTCTAATGTTGTGGATATGC 398311
Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930
| || || ||||| || |||| |||||| | ||||| ||| | ||||| || ||
Sbjct 398312 AAGCCGATACCTCCGGCGGTTTTGGAGATTTGGGCACACGTTTTGAGCGTGTCGTAGATG 398371
Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATA 69990
|| || ||| || || |||| | || |||||| || | ||| ||
Sbjct 398372 CCGTCGATGGAGTCTGCTGCCATGGCCACCAGGAAACAGGACGAAAGTTGGCCCTGGGGG 398431
Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAG-CAGA-- 70047
||||| ||||| || || |||||||| || || ||||| ||||| || | ||||
Sbjct 398432 GTTCCTGCATTGAACAAAGTAGGAGACGCATGTGTGAA----TTTTCTGAGCGACAGAGC 398487
Query 70048 -TTGTATGTTTCAATAGCTGATTCTATATCCCA-CT-GATGAATTCCTATCGCGACACGC 70104
| ||| ||||| || || | || || || ||| || || | || || |||
Sbjct 398488 CTGGTAGGTTTC--GCGCACCTTGAAAATATCATCTCCATGGATGCCCAGGGCCACTCGC 398545
Query 70105 ATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTT 70164
||||||||||| |||||||| || ||| || | | |||| | |||||| ||
Sbjct 398546 ATCAACATATGTTGAGGTCGCTCCACCACGTTTCCGCCAACTCTCAATAAGTATGACTTC 398605
Query 70165 TCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTC 70204
||||| || || || ||||| ||| ||| | | |||||
Sbjct 398606 TCCAGGGTCTTGAATCCAAAGTAGGAGTAAGTCATGTCTC 398645
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686908550995560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |