Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31] 29 sequences; 20,308,363 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq4 107 2e-18 seq6 96.9 3e-15 seq5 87.8 2e-12 >seq4 Length=3654803 Score = 107 bits (118), Expect = 2e-18 Identities = 164/233 (70%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 130764 GAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGGATT 130823 |||| ||||||||| |||| || | || |||||||||| |||| ||||||| || | | Sbjct 397149 GAAACTCACCAGCCTGGACCCGACGAAGGTAAATGTTGGACGTGTACGGTTCGAAACACT 397208 Query 130824 CGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAGAAT 130883 |||||| ||| | || || | ||| | || || |||||| || || | |||||| | Sbjct 397209 CGTTGTGGCCCAGAATCTGCGATGTGGAAGCTGTAGGCATGGGGGCAACAAGTAGAGAGT 397268 Query 130884 TACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGGTAG 130943 | || | |||||| | | || || ||| | | |||||||||| ||| | | Sbjct 397269 TTCGCATACCGTGTTTGGCGAGCTTGGTCTTGAGGCGAGCCCAATCCCAGAGATCCGACG 397328 Query 130944 GTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACTG 130996 || | |||||||||| |||||| || || | || | ||||||||||||| Sbjct 397329 GTGTC---TTGTTCCACAGATCAAACTGCAGCTTTCCCTGACTGGCGGGACTG 397378 Score = 104 bits (114), Expect = 2e-17 Identities = 239/354 (68%), Gaps = 7/354 (2%) Strand=Plus/Plus Query 131656 CATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGT 131715 |||||||| || ||||||||||| ||||| || || || | ||| || || || | Sbjct 398044 CATAAACAGGTCAGGCACCCATAAGGCGTAGAAGAGGTCACGGGCTCGATTTTCCTCGGC 398103 Query 131716 ACCCATAAttttt-ttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAAT 131774 | |||| ||||| || ||| | || ||||||||||| ||||||||||| ||||||| Sbjct 398104 A-CCATGGTTTTTGCGCAGATTCAGGAAATCCAAAATGTCTGCATGCCAGGGCTCCAAAT 398162 Query 131775 ACACTGCCATTGCGCCTTTGCG---CTTACCGCCTTGATTAACATGACGAACCATGTTGT 131831 ||||||| | || ||| || || || ||||| | || | ||| | |||||| Sbjct 398163 ACACTGCAAACGCTCCTGGACGTTTGTTTCCTCCTTGGTCCACGTACCGAGCAGTGTTGT 398222 Query 131832 TGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATG-TAG 131890 || | || | | ||| || | | ||| || |||| | | | ||||| || Sbjct 398223 TGAACACTCTGAGCATAGGAACGATTCCGGAGGATCTTCCTTGAGACCCAGTAATGAGAG 398282 Query 131891 CTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATT 131950 || || |||||||| || ||||| | | | || ||||||||| || ||| |||||| Sbjct 398283 CT-CCCTTGGCTCTAATGTTGTGGATATGCAAGCCGATACCTCCGGCGGTTTTGGAGATT 398341 Query 131951 AGTGCGCATTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTCCGCGGCAATG 132004 | || || | | || |||| ||||| || || | | ||| || || ||| Sbjct 398342 TGGGCACACGTTTTGAGCGTGTCGTAGATGCCGTCGATGGAGTCTGCTGCCATG 398395 >seq6 Length=3777980 Score = 96.9 bits (106), Expect = 3e-15 Identities = 157/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | |||| || | ||| | || || || || || || ||||||||| Sbjct 1245210 CCTCCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAA 1245151 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || |||| |||||||| ||||||||| | || || ||||| || ||||| || Sbjct 1245150 AGAGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGG 1245091 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || ||||||| || | | | || | ||||| | || || || Sbjct 1245090 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCCACC 1245031 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCA 27246 || || || |||| ||||| || || || || ||||||||||||| Sbjct 1245030 TCGAGGGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 1244985 >seq5 Length=4047401 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 96897 GGGTTTCATGTACACGAGTTTGGCGACACGAGCAACGGCTGCACTTCGGCCGGCGAACAT 96956 || || || || ||||||||||| |||| | ||||||||||||||| |||||| || Sbjct 1464521 GGATTCCACGTCCACGAGTTTGGTGACAACACCAACGGCTGCACTTCTGCCGGCCCCCAC 1464462 Query 96957 TTCAACCC-TACATTGCAAAATCACGGCGCACCCAGCGCCATTGAACGCCACGTTGGTGA 97015 |||||||| | || | | || ||||| | |||| || | ||| || ||||||||||| Sbjct 1464461 TTCAACCCCTTCAA-GAAGAACCACGGTGGTCCCACCGACTCTGAGCGACACGTTGGTGA 1464403 Query 97016 TCTGGGCAACGT 97027 || || ||||| Sbjct 1464402 CCTCGGAAACGT 1464391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424934249812248