Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31] 29 sequences; 20,308,363 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2 125 9e-24 seq4 86.0 8e-12 >seq2 Length=3052417 Score = 125 bits (138), Expect = 9e-24 Identities = 344/522 (66%), Gaps = 20/522 (4%) Strand=Plus/Plus Query 122380 ACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATAAAGTCAAAT 122439 || |||||||| || ||||||||||| || | || ||||| ||||| ||||| || Sbjct 506607 ACTCGCTTCTCGAAAAAGTTGGTCTTGCCGGCCAGAGAGATGTTCTCCATGAAGTCGAAG 506666 Query 122440 GGATTCTTCGCGTTCCAAA--TGGGTGGCACCC----CAACTTGTTTGAGGAGACGATCC 122493 || || | | ||| | | | || | ||| ||||| || ||||| || Sbjct 506667 GGGTTGGTGGAGTTATACACCTTGGAGTTACCGAGAGCAACT------AGCAGACGGTCA 506720 Query 122494 GACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACATGGG 122553 | ||| |||| ||||||| | ||||| || | ||||||||| | || ||| || Sbjct 506721 GCGACAAACTCGATGTACTGGCACATCAGCTTGGCGTTCATACCAAGCAGACCACAGGGC 506780 Query 122554 AGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGGATA 122613 || ||||| | |||| | | ||| || |||| ||||| | || | | | | | Sbjct 506781 AGAGCGTCAGTAAGGAACTCCTGCTCGATGCCAACAGCCTCGACAATGACGTCCTCAACA 506840 Query 122614 GTTTCGGTAGTGGGTCTATTACGCAAAGT-CTTGAAGAGCTCCACGGCAAACTCCTGGTG 122672 | | | | ||||| || | ||| || | ||| ||| |||||| || ||| Sbjct 506841 ATCTTCTTTGAGGGTCGGTT-CTCAAGGTGCGAGAAAAGCAGGCAGGCAAAGTCAGTGTG 506899 Query 122673 GAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCG 122732 |||||||| |||||||| || || || || |||||| || || ||||||||||| || Sbjct 506900 CAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCAGGCATGAGACCTCG 506959 Query 122733 CTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGC 122792 |||||| | ||| | || | | ||| || |||||||||||||| ||||| || || Sbjct 506960 CTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCGGAGAAGAAGATGCCCTCGACGGCGGC 507019 Query 122793 AAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATC---AAACCATTTCATTGC 122849 ||| |||| || || || | |||| | |||| | | || | ||| || | || Sbjct 507020 AAAGGCAATGAGTCGCTCTCCAAAGGTG---GACTCTTCGTCGGAGATCCACTTGAGGGC 507076 Query 122850 CCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 ||| | ||||| |||| || || || | || | |||||| Sbjct 507077 CCAGTCGGCCTTTTTCTTGATGCAGGGGATGGTCTCGATGGC 507118 >seq4 Length=3654803 Score = 86.0 bits (94), Expect = 8e-12 Identities = 202/296 (68%), Gaps = 12/296 (4%) Strand=Plus/Minus Query 182513 GATGAGACCCTTGATGTGAGAACCATCATTATCGGCATCTGTCATAATCATAAGACGACC 182572 ||| |||||||||||||| |||||||||| ||| ||| ||||| ||||| ||| | || Sbjct 3112746 GATCAGACCCTTGATGTGGGAACCATCATGATCCTGATCGGTCATGATCATCAGATGCCC 3112687 Query 182573 ATAGCGAAGTTCAGAAACATCTTG-GTAGTCTTTTCCTTGT--TGAAGACCAAGGATCTT 182629 || || || || || || | ||||| || ||||| || ||||| | ||||| Sbjct 3112686 GTATCGCAGGTC-CTTGCAGCTCGTGTAGTGCTT--CTTGTGCTGCAGACCGATGATCTC 3112630 Query 182630 CTTGAGATCATTGAACTCCTGGT--TTGATGTAAGCTGTGCCACCGAAGCGTCCCGAACA 182687 ||||| | | | || ||| || || ||| | ||| || || || || || || Sbjct 3112629 CTTGATAGCCTGGATCTCGGCGTTCTTCATG--ATCTGGTCCGTGGACGCCTCTCGCACG 3112572 Query 182688 TTCTTACAT-TTACCGCGAAGTGGGAACACACCGTAGTGATCACGACCAACGACAGAGAG 182746 || ||| ||||| || || || || | || || | || ||||||| ||||| || Sbjct 3112571 TT-GAGCATCTTACCACGCAGAGGAAAGGCGCCATATCGTTCTCGACCAATCACAGACAG 3112513 Query 182747 ACCCGCAACCGCGAGGGTTTTCGCCGAATCACCCTCCGTGACAATGAGAGTACACT 182802 || || ||| | ||| | || || || ||||| |||| |||||| || |||| Sbjct 3112512 TCCAGCGTTCGCCATGGTCATGGCGGAGTCTCCCTCAGTGAGAATGAGCGTGCACT 3112457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031772338400