Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31]
29 sequences; 20,308,363 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq2 125 9e-24
seq4 86.0 8e-12
>seq2
Length=3052417
Score = 125 bits (138), Expect = 9e-24
Identities = 344/522 (66%), Gaps = 20/522 (4%)
Strand=Plus/Plus
Query 122380 ACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATAAAGTCAAAT 122439
|| |||||||| || ||||||||||| || | || ||||| ||||| ||||| ||
Sbjct 506607 ACTCGCTTCTCGAAAAAGTTGGTCTTGCCGGCCAGAGAGATGTTCTCCATGAAGTCGAAG 506666
Query 122440 GGATTCTTCGCGTTCCAAA--TGGGTGGCACCC----CAACTTGTTTGAGGAGACGATCC 122493
|| || | | ||| | | | || | ||| ||||| || ||||| ||
Sbjct 506667 GGGTTGGTGGAGTTATACACCTTGGAGTTACCGAGAGCAACT------AGCAGACGGTCA 506720
Query 122494 GACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACATGGG 122553
| ||| |||| ||||||| | ||||| || | ||||||||| | || ||| ||
Sbjct 506721 GCGACAAACTCGATGTACTGGCACATCAGCTTGGCGTTCATACCAAGCAGACCACAGGGC 506780
Query 122554 AGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGGATA 122613
|| ||||| | |||| | | ||| || |||| ||||| | || | | | | |
Sbjct 506781 AGAGCGTCAGTAAGGAACTCCTGCTCGATGCCAACAGCCTCGACAATGACGTCCTCAACA 506840
Query 122614 GTTTCGGTAGTGGGTCTATTACGCAAAGT-CTTGAAGAGCTCCACGGCAAACTCCTGGTG 122672
| | | | ||||| || | ||| || | ||| ||| |||||| || |||
Sbjct 506841 ATCTTCTTTGAGGGTCGGTT-CTCAAGGTGCGAGAAAAGCAGGCAGGCAAAGTCAGTGTG 506899
Query 122673 GAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCG 122732
|||||||| |||||||| || || || || |||||| || || ||||||||||| ||
Sbjct 506900 CAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCAGGCATGAGACCTCG 506959
Query 122733 CTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGC 122792
|||||| | ||| | || | | ||| || |||||||||||||| ||||| || ||
Sbjct 506960 CTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCGGAGAAGAAGATGCCCTCGACGGCGGC 507019
Query 122793 AAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATC---AAACCATTTCATTGC 122849
||| |||| || || || | |||| | |||| | | || | ||| || | ||
Sbjct 507020 AAAGGCAATGAGTCGCTCTCCAAAGGTG---GACTCTTCGTCGGAGATCCACTTGAGGGC 507076
Query 122850 CCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891
||| | ||||| |||| || || || | || | ||||||
Sbjct 507077 CCAGTCGGCCTTTTTCTTGATGCAGGGGATGGTCTCGATGGC 507118
>seq4
Length=3654803
Score = 86.0 bits (94), Expect = 8e-12
Identities = 202/296 (68%), Gaps = 12/296 (4%)
Strand=Plus/Minus
Query 182513 GATGAGACCCTTGATGTGAGAACCATCATTATCGGCATCTGTCATAATCATAAGACGACC 182572
||| |||||||||||||| |||||||||| ||| ||| ||||| ||||| ||| | ||
Sbjct 3112746 GATCAGACCCTTGATGTGGGAACCATCATGATCCTGATCGGTCATGATCATCAGATGCCC 3112687
Query 182573 ATAGCGAAGTTCAGAAACATCTTG-GTAGTCTTTTCCTTGT--TGAAGACCAAGGATCTT 182629
|| || || || || || | ||||| || ||||| || ||||| | |||||
Sbjct 3112686 GTATCGCAGGTC-CTTGCAGCTCGTGTAGTGCTT--CTTGTGCTGCAGACCGATGATCTC 3112630
Query 182630 CTTGAGATCATTGAACTCCTGGT--TTGATGTAAGCTGTGCCACCGAAGCGTCCCGAACA 182687
||||| | | | || ||| || || ||| | ||| || || || || || ||
Sbjct 3112629 CTTGATAGCCTGGATCTCGGCGTTCTTCATG--ATCTGGTCCGTGGACGCCTCTCGCACG 3112572
Query 182688 TTCTTACAT-TTACCGCGAAGTGGGAACACACCGTAGTGATCACGACCAACGACAGAGAG 182746
|| ||| ||||| || || || || | || || | || ||||||| ||||| ||
Sbjct 3112571 TT-GAGCATCTTACCACGCAGAGGAAAGGCGCCATATCGTTCTCGACCAATCACAGACAG 3112513
Query 182747 ACCCGCAACCGCGAGGGTTTTCGCCGAATCACCCTCCGTGACAATGAGAGTACACT 182802
|| || ||| | ||| | || || || ||||| |||| |||||| || ||||
Sbjct 3112512 TCCAGCGTTCGCCATGGTCATGGCGGAGTCTCCCTCAGTGAGAATGAGCGTGCACT 3112457
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628031772338400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |