Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31]
29 sequences; 20,308,363 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq6 280 2e-70
seq4 147 2e-30
seq2 98.7 1e-15
>seq6
Length=3777980
Score = 280 bits (310), Expect = 2e-70
Identities = 425/602 (71%), Gaps = 2/602 (0%)
Strand=Plus/Plus
Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252
||||||| ||| | | ||||||||||| ||| || | || | | |||||| |||
Sbjct 3775120 TCATGCGAGTCTCTGTCGGTATCCACGGCGACAACATTGCCCGGGCCATTGAGACCTACA 3775179
Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312
||| ||| || |||||||| || ||||| | || || || | |||||| || ||
Sbjct 3775180 ACTATATGTCTCAGAAGTACTTCACTCACGCTTCCCCCACTCTCTACAACGCCGGAACTC 3775239
Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372
|| |||||||||||| || ||||| || |||||||| ||||| ||||||||||
Sbjct 3775240 CCCAGCCTCAGATGTCGTCGTGTTTCCTTGTCAACATGAAGGACGACTCCATCGACGGCA 3775299
Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC- 53431
||||||| || ||||| ||||| | || ||||||| | || ||||||||| |
Sbjct 3775300 TCTACGATACCCTCAAAACCTGTGCTCTGATTTCCAAGTCTGCCGGCGGTATCGGTCTGT 3775359
Query 53432 CACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGAT 53491
| | | | ||| |||| || | ||| | || || || ||||| | || |
Sbjct 3775360 CTATCCAC-AACATCCGAGCTACTGGCTCCTACATTGCTGGAACTAACGGAACCTCCAAC 3775418
Query 53492 GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGT 53551
|| |||||||| ||||| || |||| |||||||| ||||| ||||| | ||||| ||
Sbjct 3775419 GGTATCGTGCCCATGCTGCGTGTCTATAACAACACCGCCCGATACGTTGATCAGGGAGGC 3775478
Query 53552 GGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAG 53611
||||| || | || || || ||||| ||||| ||||||| ||| || | |||
Sbjct 3775479 AACAAGCGACCTGGTGCCTTTGCAATGTACCTTGAGCCCTGGCACGACGATATCTTCGAG 3775538
Query 53612 TTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACA 53671
|| ||||||||| ||| || || | |||||||| || ||| ||||||||
Sbjct 3775539 TTCTGCGAGCTGCGAAAGAACCACGGAAAGGAAGAGATTCGAGCCCGAGACCTGTTCCTG 3775598
Query 53672 GCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTG 53731
||||||||||| || ||||| |||||| | || ||| || ||| || ||| ||||
Sbjct 3775599 GCTCTGTGGATCCCCGACCTGTTCATGGAGCGAGTCGAGCAGAACGCTGAATGGACCCTG 3775658
Query 53732 ATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATG 53791
|||||||| |||||||||||||| || | | ||||| ||||| |||||||| || ||
Sbjct 3775659 ATGTGCCCCAACGAGTGCCCCGGTCTTGACGACGTCTATGGTGATGAGTTTAAGCAGCTG 3775718
Query 53792 TA 53793
||
Sbjct 3775719 TA 3775720
Score = 147 bits (162), Expect = 2e-30
Identities = 529/813 (65%), Gaps = 36/813 (4%)
Strand=Plus/Plus
Query 55136 CGGAACCTGAACCGGGTCATCGACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCC 55195
|| ||||| ||| |||||||| || ||||||||| | ||| |||||
Sbjct 3776040 CGAAACCTCAACGCTATCATCGACCGAAACTACTACCCGGTCCCCGAGGCCAAGAAGTCT 3776099
Query 55196 AACCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATG 55255
||| | || ||||| ||||| || | ||||| ||||| ||||||||| |||||||
Sbjct 3776100 AACATGCGACACCGACCCATTGCTCTGGGTGTCCAGGGTCTGGCCGACACCTTCATGGCT 3776159
Query 55256 CTCGGATTGCCCTTCGACTCGGAACCTGCTCGAGAAATTAACCAGG-ACATCTTC-AGTC 55313
|| || | || || || || || || | |||| | | || | |||||| || |
Sbjct 3776160 CTACGACTCCCATTTGAGTCCGAGGAGGC-CAAGAAGCTCAACATCCAGATCTTCGAGAC 3776218
Query 55314 GCATCTACTTTGCAGCGCTCGAGGAGTCGTGTCATCTGGCTAT-GAGCGAGGGGACCTAC 55372
||||||| | ||| |||| | || | | ||||| | ||| || || |||||
Sbjct 3776219 -CATCTACCACGGAGCTGTCGAAGCCTCTTACGAGATGGCTCTTGAG-GACGGTGCCTAC 3776276
Query 55373 GAGACGTTCCGTGATTCGCCAGCTGACAAGGGACTTCTCCAGTTCGATCTATGGGGCAAG 55432
||||| |||| | || || || |||||| |||||||||||||| ||| |
Sbjct 3776277 GAGACCTTCCAGGGCTCCCCTGCCTCCAAGGGTGACCTCCAGTTCGATCTCTGGAACG-- 3776334
Query 55433 TCTGACCCCAT-------------GTTTGACAAGTTGAAG--CATGA-CATTCACTTGTG 55476
|||| || | || ||| | | ||| || || ||| | |
Sbjct 3776335 --TGACTCCTTCCGAGCTGTGGGAGTGGGACGATCTCAAGGCCAAGATCATGAA---GAC 3776389
Query 55477 GGGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCAT 55536
|| | || ||||| ||| | || || || ||||| || || || || | ||||| |
Sbjct 3776390 TGGTATGCGAAACTCGCTGTTGGTCGCTCCCATGCCCACTGCCTCCACTTCCCAGATTCT 3776449
Query 55537 GGGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGC 55596
|| ||| ||| |||||||| ||||| ||||||| ||| || || || ||
Sbjct 3776450 TGGTTTCAATGAGTGCTTCGAGCCCTACACTTCCAACATTTACTCTCGACGAGTTCTTGC 3776509
Query 55597 AGGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTG 55656
||||| || || ||||| || ||||||||||| || | | |||
Sbjct 3776510 TGGTGAATTCCAGATTGTCAACCCCTGGCTGCTCAAGGACCTGGTTGAGGTTGGCCTGTG 3776569
Query 55657 GAACCCGCAGATCAAGA-CGGATATTGT-GCGGAACGGGGGGTCCGTCCAGAATCTGG-- 55712
|||| | || |||| | || ||||| || || | || ||||| ||||| |
Sbjct 3776570 GAACGAGACCATGAAGAACCGA-ATTGTTGCTGA-CAACGGATCCGTGCAGAACATCCCC 3776627
Query 55713 -AGATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGT 55771
| ||||| | | ||||||| | ||| ||| |||||||||||| | |||||| |
Sbjct 3776628 AACATTCCCCAGGAAATCAAGGACCTGTACAAGACCGTGTGGGAGATTTCTCAGAAGCGA 3776687
Query 55772 CTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATC 55831
| ||||| ||| ||||| || | | ||| |||||||| ||||| || |||||
Sbjct 3776688 ATCATTGAGATGGCCGCTGACCGATCCCCCTTCATTGACCAGTCTCAGTCCCTCAACATT 3776747
Query 55832 TTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAG 55891
||| || | ||| | ||| |||| | | ||| |||||||| ||||| |||||||||
Sbjct 3776748 CACATCAAGGACCCTACCATGGGCAAGCTCACCTCCATGCACTTCTACGGCTGGAAGAAG 3776807
Query 55892 GGACTCAAGACGGGTATGTACTATCTGCGGACC 55924
|| |||||||| ||||||||||| ||||| |||
Sbjct 3776808 GGTCTCAAGACAGGTATGTACTACCTGCGAACC 3776840
>seq4
Length=3654803
Score = 147 bits (162), Expect = 2e-30
Identities = 274/397 (69%), Gaps = 4/397 (1%)
Strand=Plus/Minus
Query 53332 CTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGA 53391
||| ||||||||||| ||| | ||||| ||||||||||||||||| ||||||||
Sbjct 398410 CTGTTTCCTGGTGGCCATGGCAGCAGACTCCATCGACGGCATCTACGACACGCTCAAAAC 398351
Query 53392 GTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACGTCCGTGC 53451
||||||||| |||||||| | || |||||||| | || | ||| | | ||
Sbjct 398350 GTGTGCCCAAATCTCCAAAACCGCCGGAGGTATCGGCTTGCATATCCACAACATTAGAGC 398291
Query 53452 GAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCG 53511
|| || | | || | ||| | | || || |||||||| ||||||||| |
Sbjct 398290 CAAGGGAGCTCTCATTACTGGGTCTCAAGGAAGATCCTCCGGAATCGTTCCTATGCTCAG 398231
Query 53512 CGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCG-CAAGGGGTCGT 53570
|| ||||||||||| || |||||||| |||| || || || || | ||| | |||
Sbjct 398230 AGTGTTCAACAACACTGCTCGGTACGTGGACCAAGGAGGAAACAAACGTCCAGGAG-CGT 398172
Query 53571 TCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGA 53630
| || | || | ||||| ||||| || |||||| |||| || || | ||||| |
Sbjct 398171 TTGCAGTGTATTTGGAGCCCTGGCATGCAGACATTTTGGATTTCCTGAATCTGCGCAAAA 398112
Query 53631 ATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGGAC 53689
| || |||| ||| || | || ||||||||| || ||| || | ||| | || |||
Sbjct 398111 ACCATGGTGCCGAGGAAAATCGAGCCCGTGACCTCTTCTAC-GCCTTATGGGTGCCTGAC 398053
Query 53690 CTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGT 53726
|| || |||| || || ||||| | ||| ||||||
Sbjct 398052 CTGTTTATGCGCAAAGTCGAGAATGGCGAAAAGTGGT 398016
>seq2
Length=3052417
Score = 98.7 bits (108), Expect = 1e-15
Identities = 354/546 (65%), Gaps = 12/546 (2%)
Strand=Plus/Plus
Query 74730 AGGTGAGAGTAAAGC-GTCACGGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAA 74788
||||| ||| ||||| | || |||||| || ||| || || |||| | || |
Sbjct 506865 AGGTGCGAGAAAAGCAGGCA-GGCAAAGTCAGTGTGCAGACCCTCGTCTCGGGAGATGAG 506923
Query 74789 TTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACA 74848
|| || || || | ||||||||||| || || |||||||| | ||| |||||||
Sbjct 506924 CTCGTTGGAGAAGGTGAGGCCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGC 506983
Query 74849 GAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908
||| || || |||||||||||| ||||| |||||||| | || || | | | ||
Sbjct 506984 GAAAGAGCCGGAGAAGAAGATGCCCTCGACGGCGGCAAAGGCAATGAGTCGCT-CTCCAA 507042
Query 74909 CGGTG----CATCGGAAGTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCA- 74963
|||| | ||| | ||||| | | ||||| || || ||| |||| |||
Sbjct 507043 AGGTGGACTCTTCGTCGGAGATCCACTTGAGGGCCCAGTCGGCCTTTTTCTTGA-TGCAG 507101
Query 74964 GGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTG 75023
|||| || ||||| || | ||| ||| | ||||| ||| ||||||| | ||
Sbjct 507102 GGGATGGTCTCGATGGCGTTGAACAGGTAGGTTCGCTCTTTGGGGTCCTTGATGTATGTG 507161
Query 75024 TCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAG 75083
|| |||| || ||||| ||||| || || || ||| | | |||| | |||||
Sbjct 507162 TCGATCAGCAGCGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAG 507221
Query 75084 AAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATG 75143
|| || ||||| | ||| || || || || | | | ||||| |
Sbjct 507222 AAGCACTTGGCCTCGGGGGCCTGCACCTCGCCGGAGAATCGCTCAACCAGGTTCTCGTTA 507281
Query 75144 ACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCG 75203
||||| ||||| ||||| || || || || || || ||| ||| |||||||||
Sbjct 507282 ACGATACCGTCGGAGGCAGCAAAGAATGCGAGAACGTGGGAGATGAAGAACCGCTCATCG 507341
Query 75204 TCAGTGAGT---TTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTC 75260
| ||||| || ||||| || || |||| | | |||||||||||| | |||
Sbjct 507342 TTGTTGAGTCTGTTCTCCCAGTCACCCATGTCCTTTCCAAGATCAATCTCCTCAGCTGTC 507401
Query 75261 CAGAAA 75266
||||||
Sbjct 507402 CAGAAA 507407
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547215801634200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |