Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31] 29 sequences; 20,308,363 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq6 280 2e-70 seq4 147 2e-30 seq2 98.7 1e-15 >seq6 Length=3777980 Score = 280 bits (310), Expect = 2e-70 Identities = 425/602 (71%), Gaps = 2/602 (0%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| ||| | | ||||||||||| ||| || | || | | |||||| ||| Sbjct 3775120 TCATGCGAGTCTCTGTCGGTATCCACGGCGACAACATTGCCCGGGCCATTGAGACCTACA 3775179 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 ||| ||| || |||||||| || ||||| | || || || | |||||| || || Sbjct 3775180 ACTATATGTCTCAGAAGTACTTCACTCACGCTTCCCCCACTCTCTACAACGCCGGAACTC 3775239 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 || |||||||||||| || ||||| || |||||||| ||||| |||||||||| Sbjct 3775240 CCCAGCCTCAGATGTCGTCGTGTTTCCTTGTCAACATGAAGGACGACTCCATCGACGGCA 3775299 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC- 53431 ||||||| || ||||| ||||| | || ||||||| | || ||||||||| | Sbjct 3775300 TCTACGATACCCTCAAAACCTGTGCTCTGATTTCCAAGTCTGCCGGCGGTATCGGTCTGT 3775359 Query 53432 CACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGAT 53491 | | | | ||| |||| || | ||| | || || || ||||| | || | Sbjct 3775360 CTATCCAC-AACATCCGAGCTACTGGCTCCTACATTGCTGGAACTAACGGAACCTCCAAC 3775418 Query 53492 GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGT 53551 || |||||||| ||||| || |||| |||||||| ||||| ||||| | ||||| || Sbjct 3775419 GGTATCGTGCCCATGCTGCGTGTCTATAACAACACCGCCCGATACGTTGATCAGGGAGGC 3775478 Query 53552 GGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAG 53611 ||||| || | || || || ||||| ||||| ||||||| ||| || | ||| Sbjct 3775479 AACAAGCGACCTGGTGCCTTTGCAATGTACCTTGAGCCCTGGCACGACGATATCTTCGAG 3775538 Query 53612 TTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACA 53671 || ||||||||| ||| || || | |||||||| || ||| |||||||| Sbjct 3775539 TTCTGCGAGCTGCGAAAGAACCACGGAAAGGAAGAGATTCGAGCCCGAGACCTGTTCCTG 3775598 Query 53672 GCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTG 53731 ||||||||||| || ||||| |||||| | || ||| || ||| || ||| |||| Sbjct 3775599 GCTCTGTGGATCCCCGACCTGTTCATGGAGCGAGTCGAGCAGAACGCTGAATGGACCCTG 3775658 Query 53732 ATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATG 53791 |||||||| |||||||||||||| || | | ||||| ||||| |||||||| || || Sbjct 3775659 ATGTGCCCCAACGAGTGCCCCGGTCTTGACGACGTCTATGGTGATGAGTTTAAGCAGCTG 3775718 Query 53792 TA 53793 || Sbjct 3775719 TA 3775720 Score = 147 bits (162), Expect = 2e-30 Identities = 529/813 (65%), Gaps = 36/813 (4%) Strand=Plus/Plus Query 55136 CGGAACCTGAACCGGGTCATCGACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCC 55195 || ||||| ||| |||||||| || ||||||||| | ||| ||||| Sbjct 3776040 CGAAACCTCAACGCTATCATCGACCGAAACTACTACCCGGTCCCCGAGGCCAAGAAGTCT 3776099 Query 55196 AACCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATG 55255 ||| | || ||||| ||||| || | ||||| ||||| ||||||||| ||||||| Sbjct 3776100 AACATGCGACACCGACCCATTGCTCTGGGTGTCCAGGGTCTGGCCGACACCTTCATGGCT 3776159 Query 55256 CTCGGATTGCCCTTCGACTCGGAACCTGCTCGAGAAATTAACCAGG-ACATCTTC-AGTC 55313 || || | || || || || || || | |||| | | || | |||||| || | Sbjct 3776160 CTACGACTCCCATTTGAGTCCGAGGAGGC-CAAGAAGCTCAACATCCAGATCTTCGAGAC 3776218 Query 55314 GCATCTACTTTGCAGCGCTCGAGGAGTCGTGTCATCTGGCTAT-GAGCGAGGGGACCTAC 55372 ||||||| | ||| |||| | || | | ||||| | ||| || || ||||| Sbjct 3776219 -CATCTACCACGGAGCTGTCGAAGCCTCTTACGAGATGGCTCTTGAG-GACGGTGCCTAC 3776276 Query 55373 GAGACGTTCCGTGATTCGCCAGCTGACAAGGGACTTCTCCAGTTCGATCTATGGGGCAAG 55432 ||||| |||| | || || || |||||| |||||||||||||| ||| | Sbjct 3776277 GAGACCTTCCAGGGCTCCCCTGCCTCCAAGGGTGACCTCCAGTTCGATCTCTGGAACG-- 3776334 Query 55433 TCTGACCCCAT-------------GTTTGACAAGTTGAAG--CATGA-CATTCACTTGTG 55476 |||| || | || ||| | | ||| || || ||| | | Sbjct 3776335 --TGACTCCTTCCGAGCTGTGGGAGTGGGACGATCTCAAGGCCAAGATCATGAA---GAC 3776389 Query 55477 GGGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCAT 55536 || | || ||||| ||| | || || || ||||| || || || || | ||||| | Sbjct 3776390 TGGTATGCGAAACTCGCTGTTGGTCGCTCCCATGCCCACTGCCTCCACTTCCCAGATTCT 3776449 Query 55537 GGGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGC 55596 || ||| ||| |||||||| ||||| ||||||| ||| || || || || Sbjct 3776450 TGGTTTCAATGAGTGCTTCGAGCCCTACACTTCCAACATTTACTCTCGACGAGTTCTTGC 3776509 Query 55597 AGGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTG 55656 ||||| || || ||||| || ||||||||||| || | | ||| Sbjct 3776510 TGGTGAATTCCAGATTGTCAACCCCTGGCTGCTCAAGGACCTGGTTGAGGTTGGCCTGTG 3776569 Query 55657 GAACCCGCAGATCAAGA-CGGATATTGT-GCGGAACGGGGGGTCCGTCCAGAATCTGG-- 55712 |||| | || |||| | || ||||| || || | || ||||| ||||| | Sbjct 3776570 GAACGAGACCATGAAGAACCGA-ATTGTTGCTGA-CAACGGATCCGTGCAGAACATCCCC 3776627 Query 55713 -AGATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGT 55771 | ||||| | | ||||||| | ||| ||| |||||||||||| | |||||| | Sbjct 3776628 AACATTCCCCAGGAAATCAAGGACCTGTACAAGACCGTGTGGGAGATTTCTCAGAAGCGA 3776687 Query 55772 CTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATC 55831 | ||||| ||| ||||| || | | ||| |||||||| ||||| || ||||| Sbjct 3776688 ATCATTGAGATGGCCGCTGACCGATCCCCCTTCATTGACCAGTCTCAGTCCCTCAACATT 3776747 Query 55832 TTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAG 55891 ||| || | ||| | ||| |||| | | ||| |||||||| ||||| ||||||||| Sbjct 3776748 CACATCAAGGACCCTACCATGGGCAAGCTCACCTCCATGCACTTCTACGGCTGGAAGAAG 3776807 Query 55892 GGACTCAAGACGGGTATGTACTATCTGCGGACC 55924 || |||||||| ||||||||||| ||||| ||| Sbjct 3776808 GGTCTCAAGACAGGTATGTACTACCTGCGAACC 3776840 >seq4 Length=3654803 Score = 147 bits (162), Expect = 2e-30 Identities = 274/397 (69%), Gaps = 4/397 (1%) Strand=Plus/Minus Query 53332 CTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGA 53391 ||| ||||||||||| ||| | ||||| ||||||||||||||||| |||||||| Sbjct 398410 CTGTTTCCTGGTGGCCATGGCAGCAGACTCCATCGACGGCATCTACGACACGCTCAAAAC 398351 Query 53392 GTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACGTCCGTGC 53451 ||||||||| |||||||| | || |||||||| | || | ||| | | || Sbjct 398350 GTGTGCCCAAATCTCCAAAACCGCCGGAGGTATCGGCTTGCATATCCACAACATTAGAGC 398291 Query 53452 GAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCG 53511 || || | | || | ||| | | || || |||||||| ||||||||| | Sbjct 398290 CAAGGGAGCTCTCATTACTGGGTCTCAAGGAAGATCCTCCGGAATCGTTCCTATGCTCAG 398231 Query 53512 CGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCG-CAAGGGGTCGT 53570 || ||||||||||| || |||||||| |||| || || || || | ||| | ||| Sbjct 398230 AGTGTTCAACAACACTGCTCGGTACGTGGACCAAGGAGGAAACAAACGTCCAGGAG-CGT 398172 Query 53571 TCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGA 53630 | || | || | ||||| ||||| || |||||| |||| || || | ||||| | Sbjct 398171 TTGCAGTGTATTTGGAGCCCTGGCATGCAGACATTTTGGATTTCCTGAATCTGCGCAAAA 398112 Query 53631 ATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGGAC 53689 | || |||| ||| || | || ||||||||| || ||| || | ||| | || ||| Sbjct 398111 ACCATGGTGCCGAGGAAAATCGAGCCCGTGACCTCTTCTAC-GCCTTATGGGTGCCTGAC 398053 Query 53690 CTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGT 53726 || || |||| || || ||||| | ||| |||||| Sbjct 398052 CTGTTTATGCGCAAAGTCGAGAATGGCGAAAAGTGGT 398016 >seq2 Length=3052417 Score = 98.7 bits (108), Expect = 1e-15 Identities = 354/546 (65%), Gaps = 12/546 (2%) Strand=Plus/Plus Query 74730 AGGTGAGAGTAAAGC-GTCACGGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAA 74788 ||||| ||| ||||| | || |||||| || ||| || || |||| | || | Sbjct 506865 AGGTGCGAGAAAAGCAGGCA-GGCAAAGTCAGTGTGCAGACCCTCGTCTCGGGAGATGAG 506923 Query 74789 TTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACA 74848 || || || || | ||||||||||| || || |||||||| | ||| ||||||| Sbjct 506924 CTCGTTGGAGAAGGTGAGGCCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGC 506983 Query 74849 GAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908 ||| || || |||||||||||| ||||| |||||||| | || || | | | || Sbjct 506984 GAAAGAGCCGGAGAAGAAGATGCCCTCGACGGCGGCAAAGGCAATGAGTCGCT-CTCCAA 507042 Query 74909 CGGTG----CATCGGAAGTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCA- 74963 |||| | ||| | ||||| | | ||||| || || ||| |||| ||| Sbjct 507043 AGGTGGACTCTTCGTCGGAGATCCACTTGAGGGCCCAGTCGGCCTTTTTCTTGA-TGCAG 507101 Query 74964 GGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTG 75023 |||| || ||||| || | ||| ||| | ||||| ||| ||||||| | || Sbjct 507102 GGGATGGTCTCGATGGCGTTGAACAGGTAGGTTCGCTCTTTGGGGTCCTTGATGTATGTG 507161 Query 75024 TCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAG 75083 || |||| || ||||| ||||| || || || ||| | | |||| | ||||| Sbjct 507162 TCGATCAGCAGCGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAG 507221 Query 75084 AAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATG 75143 || || ||||| | ||| || || || || | | | ||||| | Sbjct 507222 AAGCACTTGGCCTCGGGGGCCTGCACCTCGCCGGAGAATCGCTCAACCAGGTTCTCGTTA 507281 Query 75144 ACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCG 75203 ||||| ||||| ||||| || || || || || || ||| ||| ||||||||| Sbjct 507282 ACGATACCGTCGGAGGCAGCAAAGAATGCGAGAACGTGGGAGATGAAGAACCGCTCATCG 507341 Query 75204 TCAGTGAGT---TTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTC 75260 | ||||| || ||||| || || |||| | | |||||||||||| | ||| Sbjct 507342 TTGTTGAGTCTGTTCTCCCAGTCACCCATGTCCTTTCCAAGATCAATCTCCTCAGCTGTC 507401 Query 75261 CAGAAA 75266 |||||| Sbjct 507402 CAGAAA 507407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215801634200