Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31] 29 sequences; 20,308,363 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq6 217 2e-51 seq5 158 1e-33 >seq6 Length=3777980 Score = 217 bits (240), Expect = 2e-51 Identities = 689/1059 (65%), Gaps = 33/1059 (3%) Strand=Plus/Minus Query 80715 CATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA 80774 |||||| ||| ||||| ||||| || || | || || || ||||| ||| |||| || Sbjct 3776156 CATGAAGGTGTCGGCCAGACCCTGGACACCCAGAGCAATGGGTCGGTGTCGCATGTTAGA 3776097 Query 80775 TCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGT 80834 || |||||| || | ||||| |||| ||||||| ||| ||||| || Sbjct 3776096 CTTCTTGGCCTCGGGGACCGGGTAGTAGTTTCGGTCGATGATAGCGTTGAGGTTTCGCAC 3776037 Query 80835 AACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAA-------TTGGT-TCCCCT-- 80884 || ||| | || || || || |||| |||||| | ||||| || || Sbjct 3776036 AATGACCTTGGCAATGTCGTGCAGCTTCTTGAAGTCGTAGAACGAGTTGGTGTCGTCTCG 3775977 Query 80885 --TCACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATC 80942 | ||||| | || || | ||| ||||| ||||| || || ||||| |||| | Sbjct 3775976 AGTAACAAAAGTGGGCAGAGCGATGGAAGCCAGGTTGCAGACAGCGACCTCATCAGGAGA 3775917 Query 80943 TGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTG 81002 | |||| || || || ||||| ||||||||||||||||| || ||||| ||||| Sbjct 3775916 AGAGTACTCTACAATCTCACAGCACAGGTTAGAAGACTTAATTGTTCCGAGGTTCTTCTG 3775857 Query 81003 GTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTG 81062 ||| ||||| |||||| | ||||||||| |||| | ||| | |||| |||| ||| Sbjct 3775856 GTTGGACTTTCGGTTGCAGGAGTCCTTGTACAGCATGAAGGGGTTGCCGGACTCGGTCTG 3775797 Query 81063 TGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTC 81122 | | ||| ||| || ||| | || | || || ||| | ||| || Sbjct 3775796 GCAGTCGAGAATGTGGTACCACAGCTTCTGGGCAGGGATGGTTCGTCGGCCTCGGCCCTC 3775737 Query 81123 GGCCACATACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGT-GAAGT--TCAGTGAGGT 81178 | | |||| |||| |||| | | |||| |||| | || || ||| || Sbjct 3775736 CTTCTCGTACTGCTCGTACAGCTGCTTA-AACTCATCACCATAGACGTCGTCA---AGAC 3775681 Query 81179 CTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGA 81238 | ||||||||||| |||||||||||| ||| || | || | ||| || || ||||| Sbjct 3775680 CGGGGCACTCGTTGGGGCACATCAGGGTCCATTCAGCGTTCTGCTCGACTCGCTCCATGA 3775621 Query 81239 AAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCT 81298 | ||| |||||||| || || ||||||||| ||| || ||| || | || | Sbjct 3775620 ACAGGTCGGGGATCCACAGAGCCAGGAACAGGTCTCGGGCTCGAATCTCTTCCTTTCCGT 3775561 Query 81299 GGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGG 81358 |||| |||| |||| || || | ||| || | ||||| ||||| || |||| | Sbjct 3775560 GGTTCTTTCGCAGCTCGCAGAACTCGAAGATATCGTCGTGCCAGGGCTCAAGGTACATTG 3775501 Query 81359 CGATCGACCC------CTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAA 81412 | | | || |||| ||| ||||| | ||||| ||||| || |||| Sbjct 3775500 CAAAGGCACCAGGTCGCTTGTT---GCCTCCCTGATCAACGTATCGGGCGGTGTTGTTAT 3775444 Query 81413 ATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACC 81472 | ||||||| ||| || | |||||| | || ||||| || || | || || | Sbjct 3775443 AGACACGCAGCATGGGCACGATACCGTTGGAGGTTCCGTTAGTTCCAGCAATGTAGGAGC 3775384 Query 81473 CCTTGGCGCGCACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAG 81532 | | || || | ||| ||| || |||||||| || || | |||| |||||| ||| Sbjct 3775383 CAGTAGCTCGGATGTTGTGGATAGACAGACCGATACCGCCGGCAGACTTGGAAATCAGAG 3775324 Query 81533 CACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGA 81592 |||| || | ||| || || || || |||||| || | ||||||| | | || Sbjct 3775323 CACAGGTTTTGAGGGTATCGTAGATGCCGTCGATGGAGTCGTCCTTCATGTTGACAAGGA 3775264 Query 81593 AACAGCTTGACATCTGAGGGCTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTG 81650 |||| ||||||||||| | ||| ||||| ||| | || || |||| ||||| Sbjct 3775263 AACACGACGACATCTGAGG--CTGGGGAGTTCCGGCGTTGTAGAGAGTGGGGGAAGCGTG 3775206 Query 81651 AATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACC 81710 | |||| || | ||||| || ||||| || || | || | ||| | ||| || Sbjct 3775205 AGTGAAGTACTTCTGAGACATATAGTTGTAGGTCTCAATGGCCCGGGCAATGTTGTCGCC 3775146 Query 81711 GTGAATACCGATAGCTACACGCATAAACATGTACTGGGG 81749 ||| ||||||| || || ||||| | ||| | ||||| Sbjct 3775145 GTGGATACCGACAGAGACTCGCATGATCATCTGTTGGGG 3775107 Score = 190 bits (210), Expect = 2e-43 Identities = 179/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||||||||| |||||||| |||||||| || || ||||| ||||| Sbjct 1363674 AATGCAGATTTTTGTCAAGACCCTTACCGGTAAGACTATCACCCTCGAGGTGGAGTCTTC 1363733 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | || | ||| | || || |||||||||||||||||||| || ||||| Sbjct 1363734 CGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCA 1363793 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| || || || || |||||||| |||||||| | || ||||| | ||||| || Sbjct 1363794 GCAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACCCTTTCTGACTACAA 1363853 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||||| ||||| ||| |||| ||||| ||||| Sbjct 1363854 CATCCAGAAGGAGTCCACTCTCCATCTCGTCCTGCGACTTCGAGGTGG 1363901 Score = 183 bits (202), Expect = 3e-41 Identities = 176/226 (78%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 27407 TGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTG 27466 ||||||||||||||||||| ||||| ||||||||||| || || ||||| ||||| || Sbjct 1244985 TGCAAATCTTTGTCAAGACCCTTACTGGCAAGACTATCACCCTCGAGGTGGAGTCCTCTG 1245044 Query 27467 ATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGC 27526 | | ||||| || | ||| | || || ||||||||||||||||| || || ||||||| Sbjct 1245045 ACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCGGACCAGC 1245104 Query 27527 AGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATG 27586 |||| || || || || |||||||| |||||||| | || || || | ||||| || Sbjct 1245105 AGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACTCTTTCCGACTACAACA 1245164 Query 27587 TCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||||| ||||| || |||| || || || || Sbjct 1245165 TCCAGAAGGAGTCCACTCTCCATCTCGTTCTGCGACTCCGAGGAGG 1245210 Score = 111 bits (122), Expect = 2e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || ||||| |||||||| || |||||||| ||||||||||||||||| | |||||| || Sbjct 3776839 GTTCGCAGGTAGTACATACCTGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGCATGGAG 3776780 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157 ||||||| | | || |||| || ||| ||||| || ||||||||||| ||| Sbjct 3776779 GTGAGCTTGCCCATGGTAGGGTCCTTGATGTGAATGTTGAGGGACTGAGACTGGTCAATG 3776720 Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGT 80216 || | || || || ||||| ||||| ||| ||| || | ||| ||||| || || Sbjct 3776719 AAGGGGGATCGGTCAGCGGCCATCTCAATGATTCGCTTCTGAGAAATCTCCCACACGGT 3776661 >seq5 Length=4047401 Score = 158 bits (174), Expect = 1e-33 Identities = 129/157 (82%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || || ||||| || ||||| ||||||||||| | Sbjct 2184063 ATGCAGATTTTCGTCAAGACTCTGACTGGAAAGACCATCACTCTCGAGGTTGAGTCTTCT 2184122 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | ||| | || ||||||||||||||||||||||| || |||||| Sbjct 2184123 GACACTATTGATAATGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCCCCGGACCAG 2184182 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATG 27562 ||||| || ||||||||||||||||| |||||||||| Sbjct 2184183 CAGCGACTGATTTTTGCTGGTAAGCAGCTCGAGGATG 2184219 Score = 141 bits (156), Expect = 1e-28 Identities = 119/146 (82%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || ||||||||||||||||||||||| || ||||||||||| || ||||||||||||||| Sbjct 2184321 AAGATTCAGGACAAGGAGGGAATTCCCCCGGACCAGCAGCGACTGATTTTTGCTGGTAAG 2184380 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || |||||||||| || || || | ||||| || |||| ||||| |||||||| ||| Sbjct 2184381 CAGCTCGAGGATGGCCGAACTCTTTCCGACTACAACATCCAGAAGGAGTCCACTCTCCAT 2184440 Query 27610 CTAGTCTTGCGTCTTCGCGGTGGACA 27635 || || | || || || ||||| || Sbjct 2184441 CTCGTTCTTCGACTCCGAGGTGGCCA 2184466 Score = 138 bits (152), Expect = 1e-27 Identities = 120/149 (81%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||| | || |||||||||||||||||||||||||| ||||||||||| || ||||| || Sbjct 2183913 AAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCGGACCAGCAGCGACTGATTTTCGCC 2183972 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 |||||||| |||||||||| || ||||| | ||||| || | || ||||| |||||| Sbjct 2183973 GGTAAGCAGCTCGAGGATGGCCGAACCCTGTCTGACTACAACATTCAGAAGGAGTCCACT 2184032 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || ||||| || | || || || ||||| Sbjct 2184033 CTCCATCTCGTTCTCCGACTCCGAGGTGG 2184061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310193262480