Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31]
29 sequences; 20,308,363 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq6 217 2e-51
seq5 158 1e-33
>seq6
Length=3777980
Score = 217 bits (240), Expect = 2e-51
Identities = 689/1059 (65%), Gaps = 33/1059 (3%)
Strand=Plus/Minus
Query 80715 CATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA 80774
|||||| ||| ||||| ||||| || || | || || || ||||| ||| |||| ||
Sbjct 3776156 CATGAAGGTGTCGGCCAGACCCTGGACACCCAGAGCAATGGGTCGGTGTCGCATGTTAGA 3776097
Query 80775 TCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGT 80834
|| |||||| || | ||||| |||| ||||||| ||| ||||| ||
Sbjct 3776096 CTTCTTGGCCTCGGGGACCGGGTAGTAGTTTCGGTCGATGATAGCGTTGAGGTTTCGCAC 3776037
Query 80835 AACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAA-------TTGGT-TCCCCT-- 80884
|| ||| | || || || || |||| |||||| | ||||| || ||
Sbjct 3776036 AATGACCTTGGCAATGTCGTGCAGCTTCTTGAAGTCGTAGAACGAGTTGGTGTCGTCTCG 3775977
Query 80885 --TCACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATC 80942
| ||||| | || || | ||| ||||| ||||| || || ||||| |||| |
Sbjct 3775976 AGTAACAAAAGTGGGCAGAGCGATGGAAGCCAGGTTGCAGACAGCGACCTCATCAGGAGA 3775917
Query 80943 TGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTG 81002
| |||| || || || ||||| ||||||||||||||||| || ||||| |||||
Sbjct 3775916 AGAGTACTCTACAATCTCACAGCACAGGTTAGAAGACTTAATTGTTCCGAGGTTCTTCTG 3775857
Query 81003 GTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTG 81062
||| ||||| |||||| | ||||||||| |||| | ||| | |||| |||| |||
Sbjct 3775856 GTTGGACTTTCGGTTGCAGGAGTCCTTGTACAGCATGAAGGGGTTGCCGGACTCGGTCTG 3775797
Query 81063 TGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTC 81122
| | ||| ||| || ||| | || | || || ||| | ||| ||
Sbjct 3775796 GCAGTCGAGAATGTGGTACCACAGCTTCTGGGCAGGGATGGTTCGTCGGCCTCGGCCCTC 3775737
Query 81123 GGCCACATACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGT-GAAGT--TCAGTGAGGT 81178
| | |||| |||| |||| | | |||| |||| | || || ||| ||
Sbjct 3775736 CTTCTCGTACTGCTCGTACAGCTGCTTA-AACTCATCACCATAGACGTCGTCA---AGAC 3775681
Query 81179 CTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGA 81238
| ||||||||||| |||||||||||| ||| || | || | ||| || || |||||
Sbjct 3775680 CGGGGCACTCGTTGGGGCACATCAGGGTCCATTCAGCGTTCTGCTCGACTCGCTCCATGA 3775621
Query 81239 AAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCT 81298
| ||| |||||||| || || ||||||||| ||| || ||| || | || |
Sbjct 3775620 ACAGGTCGGGGATCCACAGAGCCAGGAACAGGTCTCGGGCTCGAATCTCTTCCTTTCCGT 3775561
Query 81299 GGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGG 81358
|||| |||| |||| || || | ||| || | ||||| ||||| || |||| |
Sbjct 3775560 GGTTCTTTCGCAGCTCGCAGAACTCGAAGATATCGTCGTGCCAGGGCTCAAGGTACATTG 3775501
Query 81359 CGATCGACCC------CTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAA 81412
| | | || |||| ||| ||||| | ||||| ||||| || ||||
Sbjct 3775500 CAAAGGCACCAGGTCGCTTGTT---GCCTCCCTGATCAACGTATCGGGCGGTGTTGTTAT 3775444
Query 81413 ATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACC 81472
| ||||||| ||| || | |||||| | || ||||| || || | || || |
Sbjct 3775443 AGACACGCAGCATGGGCACGATACCGTTGGAGGTTCCGTTAGTTCCAGCAATGTAGGAGC 3775384
Query 81473 CCTTGGCGCGCACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAG 81532
| | || || | ||| ||| || |||||||| || || | |||| |||||| |||
Sbjct 3775383 CAGTAGCTCGGATGTTGTGGATAGACAGACCGATACCGCCGGCAGACTTGGAAATCAGAG 3775324
Query 81533 CACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGA 81592
|||| || | ||| || || || || |||||| || | ||||||| | | ||
Sbjct 3775323 CACAGGTTTTGAGGGTATCGTAGATGCCGTCGATGGAGTCGTCCTTCATGTTGACAAGGA 3775264
Query 81593 AACAGCTTGACATCTGAGGGCTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTG 81650
|||| ||||||||||| | ||| ||||| ||| | || || |||| |||||
Sbjct 3775263 AACACGACGACATCTGAGG--CTGGGGAGTTCCGGCGTTGTAGAGAGTGGGGGAAGCGTG 3775206
Query 81651 AATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACC 81710
| |||| || | ||||| || ||||| || || | || | ||| | ||| ||
Sbjct 3775205 AGTGAAGTACTTCTGAGACATATAGTTGTAGGTCTCAATGGCCCGGGCAATGTTGTCGCC 3775146
Query 81711 GTGAATACCGATAGCTACACGCATAAACATGTACTGGGG 81749
||| ||||||| || || ||||| | ||| | |||||
Sbjct 3775145 GTGGATACCGACAGAGACTCGCATGATCATCTGTTGGGG 3775107
Score = 190 bits (210), Expect = 2e-43
Identities = 179/228 (79%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| || ||||||||||| |||||||| |||||||| || || ||||| |||||
Sbjct 1363674 AATGCAGATTTTTGTCAAGACCCTTACCGGTAAGACTATCACCCTCGAGGTGGAGTCTTC 1363733
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | ||| | || | ||| | || || |||||||||||||||||||| || |||||
Sbjct 1363734 CGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCA 1363793
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|||||| || || || || |||||||| |||||||| | || ||||| | ||||| ||
Sbjct 1363794 GCAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACCCTTTCTGACTACAA 1363853
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| |||||||| ||||| ||| |||| ||||| |||||
Sbjct 1363854 CATCCAGAAGGAGTCCACTCTCCATCTCGTCCTGCGACTTCGAGGTGG 1363901
Score = 183 bits (202), Expect = 3e-41
Identities = 176/226 (78%), Gaps = 0/226 (0%)
Strand=Plus/Plus
Query 27407 TGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTG 27466
||||||||||||||||||| ||||| ||||||||||| || || ||||| ||||| ||
Sbjct 1244985 TGCAAATCTTTGTCAAGACCCTTACTGGCAAGACTATCACCCTCGAGGTGGAGTCCTCTG 1245044
Query 27467 ATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGC 27526
| | ||||| || | ||| | || || ||||||||||||||||| || || |||||||
Sbjct 1245045 ACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCGGACCAGC 1245104
Query 27527 AGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATG 27586
|||| || || || || |||||||| |||||||| | || || || | ||||| ||
Sbjct 1245105 AGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACTCTTTCCGACTACAACA 1245164
Query 27587 TCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| |||||||| ||||| || |||| || || || ||
Sbjct 1245165 TCCAGAAGGAGTCCACTCTCCATCTCGTTCTGCGACTCCGAGGAGG 1245210
Score = 111 bits (122), Expect = 2e-19
Identities = 132/179 (74%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097
|| ||||| |||||||| || |||||||| ||||||||||||||||| | |||||| ||
Sbjct 3776839 GTTCGCAGGTAGTACATACCTGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGCATGGAG 3776780
Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157
||||||| | | || |||| || ||| ||||| || ||||||||||| |||
Sbjct 3776779 GTGAGCTTGCCCATGGTAGGGTCCTTGATGTGAATGTTGAGGGACTGAGACTGGTCAATG 3776720
Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGT 80216
|| | || || || ||||| ||||| ||| ||| || | ||| ||||| || ||
Sbjct 3776719 AAGGGGGATCGGTCAGCGGCCATCTCAATGATTCGCTTCTGAGAAATCTCCCACACGGT 3776661
>seq5
Length=4047401
Score = 158 bits (174), Expect = 1e-33
Identities = 129/157 (82%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || |||||||| || || || ||||| || ||||| ||||||||||| |
Sbjct 2184063 ATGCAGATTTTCGTCAAGACTCTGACTGGAAAGACCATCACTCTCGAGGTTGAGTCTTCT 2184122
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | |||| ||| | ||| | || ||||||||||||||||||||||| || ||||||
Sbjct 2184123 GACACTATTGATAATGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCCCCGGACCAG 2184182
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATG 27562
||||| || ||||||||||||||||| ||||||||||
Sbjct 2184183 CAGCGACTGATTTTTGCTGGTAAGCAGCTCGAGGATG 2184219
Score = 141 bits (156), Expect = 1e-28
Identities = 119/146 (82%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| ||||||||||||||||||||||| || ||||||||||| || |||||||||||||||
Sbjct 2184321 AAGATTCAGGACAAGGAGGGAATTCCCCCGGACCAGCAGCGACTGATTTTTGCTGGTAAG 2184380
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
|| |||||||||| || || || | ||||| || |||| ||||| |||||||| |||
Sbjct 2184381 CAGCTCGAGGATGGCCGAACTCTTTCCGACTACAACATCCAGAAGGAGTCCACTCTCCAT 2184440
Query 27610 CTAGTCTTGCGTCTTCGCGGTGGACA 27635
|| || | || || || ||||| ||
Sbjct 2184441 CTCGTTCTTCGACTCCGAGGTGGCCA 2184466
Score = 138 bits (152), Expect = 1e-27
Identities = 120/149 (81%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543
||| | || |||||||||||||||||||||||||| ||||||||||| || ||||| ||
Sbjct 2183913 AAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCGGACCAGCAGCGACTGATTTTCGCC 2183972
Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603
|||||||| |||||||||| || ||||| | ||||| || | || ||||| ||||||
Sbjct 2183973 GGTAAGCAGCTCGAGGATGGCCGAACCCTGTCTGACTACAACATTCAGAAGGAGTCCACT 2184032
Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| ||||| || | || || || |||||
Sbjct 2184033 CTCCATCTCGTTCTCCGACTCCGAGGTGG 2184061
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570310193262480
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