Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31]
29 sequences; 20,308,363 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq3 165 7e-36
seq4 98.7 8e-16
>seq3
Length=3339761
Score = 165 bits (182), Expect = 7e-36
Identities = 396/594 (67%), Gaps = 19/594 (3%)
Strand=Plus/Minus
Query 29882 TCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCT 29941
||||||| |||| ||| || || |||||||||| | |||| | | |||||| ||
Sbjct 1502279 TCCACGTGATCCTTGTACACATGGGCGTCTCCCATGGTGTGAATGAGCTCTCCACAGTCC 1502220
Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001
| ||||||| || || ||||| ||||| |||| |||| ||| ||||| |||||
Sbjct 1502219 AAATCGGTGACCTGGGCAATCATTCGGGTGAGCAGAGCGTAGGAGGCAATGTTGAAGGGG 1502160
Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAG-----CTC--TCC 30054
|| || || |||| ||| | || | ||| || ||||||||||| || ||| |||
Sbjct 1502159 ACTCCAAGACCCAGGTCACATGATCGCTGATACAGCTGACACGACAGACGTCCTCGTTCC 1502100
Query 30055 GTCGCT--------CACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGG 30106
| | ||| |||||||| || | ||| || |||||||| |||||
Sbjct 1502099 GAGTTTTTGTACGACACATAAAACTGGCAAAACATGTGACAGGGAGGAAGCGCCATCTTT 1502040
Query 30107 CCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTG 30166
| || ||||||||| || ||| ||||| || | ||| | |||||| | |||
Sbjct 1502039 GGGAGATCGGCGGGGTTCCATGCAGACAGAATGATTCGACGGTCGTGAGGGTTGGTTCTG 1501980
Query 30167 ATGAG-GTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCAT 30225
| ||| || | | | || ||||| ||||| || || | ||| || | |||
Sbjct 1501979 A-GAGTGTGTATCACCTGTTTGAGCTGGTCCACGCCTTGGCCAGTGTAATCCGTG-TCAC 1501922
Query 30226 G-TCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTC 30284
| | ||||||| ||||||||||| | ||| ||||| || || ||||||||||||||||
Sbjct 1501921 AATTCTTGTACTCGGCTCCGAAATGGCGCCATTGGAAGCCATAGACCGGTCCCAGGTCTC 1501862
Query 30285 CCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCC 30344
||||| ||||| | | || ||| |||| || || | || || || ||||||
Sbjct 1501861 CCTCTCGTCTGTGGCCCAGCCCGGCCTTTTCCAGGAACTCCTTAGATCCATTTCCGTCCC 1501802
Query 30345 AGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACA 30404
|||| | | ||||| || | |||| || ||| | || || |||||||
Sbjct 1501801 AGATGTGAATGTTTTTCTCGCTCAGTTTTTTGCCGTCGGTGCATCCAGCCACAAACCACA 1501742
Query 30405 GCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAA 30458
|||||||||| ||| | | ||||| | |||||| ||||| |||||||
Sbjct 1501741 AAAGCTCCTCCAGAACGCCTCGGTAGAAGACTCGCTTGGTGGTGAGCAGGGGAA 1501688
>seq4
Length=3654803
Score = 98.7 bits (108), Expect = 8e-16
Identities = 135/184 (73%), Gaps = 6/184 (3%)
Strand=Plus/Plus
Query 52729 TCGTCAAGGTGAGGCTGAGGGCCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCGTCGT 52788
|||| |||||| | || | || ||| | ||| |||| || |||||||||||||||
Sbjct 443595 TCGTTAAGGTGCGAATGCGAACCACCAAGATCCCCCAGATTGGAGACAAGTTTGCGTCGC 443654
Query 52789 -TCACGGCGCAAAAGGGGACG--TGCGGAGCCGTCCTGACCCAGGAGGACATGCCCTTCG 52845
|||||| || ||||| || || | | ||| | ||| | ||||||||||| |||
Sbjct 443655 GTCACGGA-CAGAAGGGTACCATTGGTGTGACGTACCGAC--ATGAGGACATGCCGTTCT 443711
Query 52846 ACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGA 52905
| || || ||||| ||||| |||||||||||||||||||| |||| || | ||||
Sbjct 443712 CCGCCGAGGGAGTGGTCCCCGATATCATCATCAACCCCCACGCCATTCCTTCGCGTATGA 443771
Query 52906 CCGT 52909
||||
Sbjct 443772 CCGT 443775
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406310256394668
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |