Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31]
29 sequences; 20,308,363 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq3 125 6e-24
seq4 89.7 4e-13
>seq3
Length=3339761
Score = 125 bits (138), Expect = 6e-24
Identities = 383/596 (64%), Gaps = 23/596 (4%)
Strand=Plus/Minus
Query 29654 TCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCT 29713
|||||||| || ||| || || || ||||||| |||||| | | |||||| ||
Sbjct 1502279 TCCACGTGATCCTTGTACACATGGGCGTCTCCCATGGTGTGAATGAGCTCTCCACAGTCC 1502220
Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773
| ||||||| || || ||||| ||||| |||| |||| ||| ||||| |||||
Sbjct 1502219 AAATCGGTGACCTGGGCAATCATTCGGGTGAGCAGAGCGTAGGAGGCAATGTTGAAGGGG 1502160
Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAG-----CTC--TCC 29826
|| || || |||| ||| | ||| | ||| || ||||| ||||| || ||| |||
Sbjct 1502159 ACTCCAAGACCCAGGTCACATGATCGCTGATACAGCTGACACGACAGACGTCCTCGTTCC 1502100
Query 29827 GTCGCT--------CACGTAAAACTGACA---CATGGCATGGCACGGAGGAAGGGCCATG 29875
| | ||| |||||||| || |||| || || |||||||| |||||
Sbjct 1502099 GAGTTTTTGTACGACACATAAAACTGGCAAAACATG---TGACAGGGAGGAAGCGCCATC 1502043
Query 29876 AGACCCAAGTCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTC 29935
| || ||||||||| ||| ||| ||||| || | ||| | |||||| |
Sbjct 1502042 TTTGGGAGATCGGCGGGGTTCCATGCAGACAGAATGATTCGACGGTCGTGAGGGTTGGTT 1501983
Query 29936 CTGATGAG-GTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNN 29994
|||| ||| || | | | || ||||| ||||| || || | ||| || |
Sbjct 1501982 CTGA-GAGTGTGTATCACCTGTTTGAGCTGGTCCACGCCTTGGCCAGTGTAATCCGTGTC 1501924
Query 29995 NNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30054
||||||| | ||| ||||| || || ||||||||||||||
Sbjct 1501923 ACAATTCTTGTACTCGGCTCCGAAATGGCGCCATTGGAAGCCATAGACCGGTCCCAGGTC 1501864
Query 30055 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30114
||||||| ||||| | | || ||| |||| || || | || || || ||||
Sbjct 1501863 TCCCTCTCGTCTGTGGCCCAGCCCGGCCTTTTCCAGGAACTCCTTAGATCCATTTCCGTC 1501804
Query 30115 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCA 30174
|||||| | | |||||| || | |||| || ||| | || || |||||
Sbjct 1501803 CCAGATGTGAATGTTTTTCTCGCTCAGTTTTTTGCCGTCGGTGCATCCAGCCACAAACCA 1501744
Query 30175 CAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAA 30230
|| |||||||||| ||| | | ||||| | |||||| ||||| |||||||
Sbjct 1501743 CAAAAGCTCCTCCAGAACGCCTCGGTAGAAGACTCGCTTGGTGGTGAGCAGGGGAA 1501688
>seq4
Length=3654803
Score = 89.7 bits (98), Expect = 4e-13
Identities = 133/184 (72%), Gaps = 6/184 (3%)
Strand=Plus/Plus
Query 53493 TCGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCATC-C 53551
|||| |||||| | || | ||| ||| | ||| |||| || ||||||||||| || |
Sbjct 443595 TCGTTAAGGTGCGAATGCGAACCACCAAGATCCCCCAGATTGGAGACAAGTTTGCGTCGC 443654
Query 53552 TTCACGGCGCAAAAGGGGACATGCGGAGCG--GTCCTGACTCAGGAGGACATGCCCTTCG 53609
|||||| || ||||| || || | | || | ||| | ||||||||||| |||
Sbjct 443655 GTCACGGA-CAGAAGGGTACCATTGGTGTGACGTACCGAC--ATGAGGACATGCCGTTCT 443711
Query 53610 ACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGA 53669
| || || ||||| ||||| |||||||||||||||||||| |||| || | ||||
Sbjct 443712 CCGCCGAGGGAGTGGTCCCCGATATCATCATCAACCCCCACGCCATTCCTTCGCGTATGA 443771
Query 53670 CGGT 53673
| ||
Sbjct 443772 CCGT 443775
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406163056446694
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |