Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31] 29 sequences; 20,308,363 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq3 125 6e-24 seq4 89.7 4e-13 >seq3 Length=3339761 Score = 125 bits (138), Expect = 6e-24 Identities = 383/596 (64%), Gaps = 23/596 (4%) Strand=Plus/Minus Query 29654 TCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCT 29713 |||||||| || ||| || || || ||||||| |||||| | | |||||| || Sbjct 1502279 TCCACGTGATCCTTGTACACATGGGCGTCTCCCATGGTGTGAATGAGCTCTCCACAGTCC 1502220 Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 | ||||||| || || ||||| ||||| |||| |||| ||| ||||| ||||| Sbjct 1502219 AAATCGGTGACCTGGGCAATCATTCGGGTGAGCAGAGCGTAGGAGGCAATGTTGAAGGGG 1502160 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAG-----CTC--TCC 29826 || || || |||| ||| | ||| | ||| || ||||| ||||| || ||| ||| Sbjct 1502159 ACTCCAAGACCCAGGTCACATGATCGCTGATACAGCTGACACGACAGACGTCCTCGTTCC 1502100 Query 29827 GTCGCT--------CACGTAAAACTGACA---CATGGCATGGCACGGAGGAAGGGCCATG 29875 | | ||| |||||||| || |||| || || |||||||| ||||| Sbjct 1502099 GAGTTTTTGTACGACACATAAAACTGGCAAAACATG---TGACAGGGAGGAAGCGCCATC 1502043 Query 29876 AGACCCAAGTCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTC 29935 | || ||||||||| ||| ||| ||||| || | ||| | |||||| | Sbjct 1502042 TTTGGGAGATCGGCGGGGTTCCATGCAGACAGAATGATTCGACGGTCGTGAGGGTTGGTT 1501983 Query 29936 CTGATGAG-GTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNN 29994 |||| ||| || | | | || ||||| ||||| || || | ||| || | Sbjct 1501982 CTGA-GAGTGTGTATCACCTGTTTGAGCTGGTCCACGCCTTGGCCAGTGTAATCCGTGTC 1501924 Query 29995 NNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30054 ||||||| | ||| ||||| || || |||||||||||||| Sbjct 1501923 ACAATTCTTGTACTCGGCTCCGAAATGGCGCCATTGGAAGCCATAGACCGGTCCCAGGTC 1501864 Query 30055 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30114 ||||||| ||||| | | || ||| |||| || || | || || || |||| Sbjct 1501863 TCCCTCTCGTCTGTGGCCCAGCCCGGCCTTTTCCAGGAACTCCTTAGATCCATTTCCGTC 1501804 Query 30115 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCA 30174 |||||| | | |||||| || | |||| || ||| | || || ||||| Sbjct 1501803 CCAGATGTGAATGTTTTTCTCGCTCAGTTTTTTGCCGTCGGTGCATCCAGCCACAAACCA 1501744 Query 30175 CAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAA 30230 || |||||||||| ||| | | ||||| | |||||| ||||| ||||||| Sbjct 1501743 CAAAAGCTCCTCCAGAACGCCTCGGTAGAAGACTCGCTTGGTGGTGAGCAGGGGAA 1501688 >seq4 Length=3654803 Score = 89.7 bits (98), Expect = 4e-13 Identities = 133/184 (72%), Gaps = 6/184 (3%) Strand=Plus/Plus Query 53493 TCGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCATC-C 53551 |||| |||||| | || | ||| ||| | ||| |||| || ||||||||||| || | Sbjct 443595 TCGTTAAGGTGCGAATGCGAACCACCAAGATCCCCCAGATTGGAGACAAGTTTGCGTCGC 443654 Query 53552 TTCACGGCGCAAAAGGGGACATGCGGAGCG--GTCCTGACTCAGGAGGACATGCCCTTCG 53609 |||||| || ||||| || || | | || | ||| | ||||||||||| ||| Sbjct 443655 GTCACGGA-CAGAAGGGTACCATTGGTGTGACGTACCGAC--ATGAGGACATGCCGTTCT 443711 Query 53610 ACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGA 53669 | || || ||||| ||||| |||||||||||||||||||| |||| || | |||| Sbjct 443712 CCGCCGAGGGAGTGGTCCCCGATATCATCATCAACCCCCACGCCATTCCTTCGCGTATGA 443771 Query 53670 CGGT 53673 | || Sbjct 443772 CCGT 443775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406163056446694