Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31]
29 sequences; 20,308,363 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq3 178 1e-39
seq4 104 2e-17
>seq3
Length=3339761
Score = 178 bits (196), Expect = 1e-39
Identities = 399/595 (67%), Gaps = 21/595 (4%)
Strand=Plus/Minus
Query 27148 TCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCT 27207
|||||||||||| ||| || || |||||||||| |||||| | | |||||| ||
Sbjct 1502279 TCCACGTGATCCTTGTACACATGGGCGTCTCCCATGGTGTGAATGAGCTCTCCACAGTCC 1502220
Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267
| ||||||| || || ||||| ||||| |||| |||| ||| ||||| |||||
Sbjct 1502219 AAATCGGTGACCTGGGCAATCATTCGGGTGAGCAGAGCGTAGGAGGCAATGTTGAAGGGG 1502160
Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCT- 27326
|| || || |||| ||| | || | ||| || ||||||||||| || ||| ||| |
Sbjct 1502159 ACTCCAAGACCCAGGTCACATGATCGCTGATACAGCTGACACGACAGACGTCC-TCGTTC 1502101
Query 27327 ----------TACG-----TAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371
|||| |||||||| || | ||| || |||||||| |||||
Sbjct 1502100 CGAGTTTTTGTACGACACATAAAACTGGCAAAACATGTGACAGGGAGGAAGCGCCATCTT 1502041
Query 27372 GCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCT 27431
| || ||||||||| || ||| ||||| || | ||| | |||||| | ||
Sbjct 1502040 TGGGAGATCGGCGGGGTTCCATGCAGACAGAATGATTCGACGGTCGTGAGGGTTGGTTCT 1501981
Query 27432 GATGAG-GTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCA 27490
|| ||| || | | | || ||||| ||||| || || | ||| || |||
Sbjct 1501980 GA-GAGTGTGTATCACCTGTTTGAGCTGGTCCACGCCTTGGCCAGTGTAATCCGTG-TCA 1501923
Query 27491 TG-TCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCT 27549
| | ||||||| ||||||||||| | ||||||||| || || |||||||||||||||
Sbjct 1501922 CAATTCTTGTACTCGGCTCCGAAATGGCGCCATTGGAAGCCATAGACCGGTCCCAGGTCT 1501863
Query 27550 CCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCC 27609
|||||| ||||| | | || ||| |||| || || | || || || |||||
Sbjct 1501862 CCCTCTCGTCTGTGGCCCAGCCCGGCCTTTTCCAGGAACTCCTTAGATCCATTTCCGTCC 1501803
Query 27610 CAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCAC 27669
||||| | | |||||| || | |||| || ||| | || || ||||||
Sbjct 1501802 CAGATGTGAATGTTTTTCTCGCTCAGTTTTTTGCCGTCGGTGCATCCAGCCACAAACCAC 1501743
Query 27670 AGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAA 27724
| |||||||||| ||| | | ||||| | |||||| ||||| |||||||
Sbjct 1501742 AAAAGCTCCTCCAGAACGCCTCGGTAGAAGACTCGCTTGGTGGTGAGCAGGGGAA 1501688
>seq4
Length=3654803
Score = 104 bits (114), Expect = 2e-17
Identities = 136/184 (74%), Gaps = 6/184 (3%)
Strand=Plus/Plus
Query 48509 TCGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGTGACAAGTTTGCGTC-C 48567
|||| |||||| | || | ||| ||| | ||| |||| || |||||||||||||| |
Sbjct 443595 TCGTTAAGGTGCGAATGCGAACCACCAAGATCCCCCAGATTGGAGACAAGTTTGCGTCGC 443654
Query 48568 TTCACGGCGCAAAAGGGGACATGTGGAGC--CGTCCTGACCCAGGAGGACATGCCCTTCG 48625
|||||| || ||||| || ||| | ||| | ||| | ||||||||||| |||
Sbjct 443655 GTCACGGA-CAGAAGGGTACCATTGGTGTGACGTACCGAC--ATGAGGACATGCCGTTCT 443711
Query 48626 ACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGA 48685
| || || ||||| ||||| |||||||||||||||||||| |||| || | ||||
Sbjct 443712 CCGCCGAGGGAGTGGTCCCCGATATCATCATCAACCCCCACGCCATTCCTTCGCGTATGA 443771
Query 48686 CCGT 48689
||||
Sbjct 443772 CCGT 443775
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369507069402299
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |