Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31] 29 sequences; 20,308,363 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq3 178 1e-39 seq4 104 2e-17 >seq3 Length=3339761 Score = 178 bits (196), Expect = 1e-39 Identities = 399/595 (67%), Gaps = 21/595 (4%) Strand=Plus/Minus Query 27148 TCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCT 27207 |||||||||||| ||| || || |||||||||| |||||| | | |||||| || Sbjct 1502279 TCCACGTGATCCTTGTACACATGGGCGTCTCCCATGGTGTGAATGAGCTCTCCACAGTCC 1502220 Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 | ||||||| || || ||||| ||||| |||| |||| ||| ||||| ||||| Sbjct 1502219 AAATCGGTGACCTGGGCAATCATTCGGGTGAGCAGAGCGTAGGAGGCAATGTTGAAGGGG 1502160 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCT- 27326 || || || |||| ||| | || | ||| || ||||||||||| || ||| ||| | Sbjct 1502159 ACTCCAAGACCCAGGTCACATGATCGCTGATACAGCTGACACGACAGACGTCC-TCGTTC 1502101 Query 27327 ----------TACG-----TAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 |||| |||||||| || | ||| || |||||||| ||||| Sbjct 1502100 CGAGTTTTTGTACGACACATAAAACTGGCAAAACATGTGACAGGGAGGAAGCGCCATCTT 1502041 Query 27372 GCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCT 27431 | || ||||||||| || ||| ||||| || | ||| | |||||| | || Sbjct 1502040 TGGGAGATCGGCGGGGTTCCATGCAGACAGAATGATTCGACGGTCGTGAGGGTTGGTTCT 1501981 Query 27432 GATGAG-GTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCA 27490 || ||| || | | | || ||||| ||||| || || | ||| || ||| Sbjct 1501980 GA-GAGTGTGTATCACCTGTTTGAGCTGGTCCACGCCTTGGCCAGTGTAATCCGTG-TCA 1501923 Query 27491 TG-TCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCT 27549 | | ||||||| ||||||||||| | ||||||||| || || ||||||||||||||| Sbjct 1501922 CAATTCTTGTACTCGGCTCCGAAATGGCGCCATTGGAAGCCATAGACCGGTCCCAGGTCT 1501863 Query 27550 CCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCC 27609 |||||| ||||| | | || ||| |||| || || | || || || ||||| Sbjct 1501862 CCCTCTCGTCTGTGGCCCAGCCCGGCCTTTTCCAGGAACTCCTTAGATCCATTTCCGTCC 1501803 Query 27610 CAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCAC 27669 ||||| | | |||||| || | |||| || ||| | || || |||||| Sbjct 1501802 CAGATGTGAATGTTTTTCTCGCTCAGTTTTTTGCCGTCGGTGCATCCAGCCACAAACCAC 1501743 Query 27670 AGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAA 27724 | |||||||||| ||| | | ||||| | |||||| ||||| ||||||| Sbjct 1501742 AAAAGCTCCTCCAGAACGCCTCGGTAGAAGACTCGCTTGGTGGTGAGCAGGGGAA 1501688 >seq4 Length=3654803 Score = 104 bits (114), Expect = 2e-17 Identities = 136/184 (74%), Gaps = 6/184 (3%) Strand=Plus/Plus Query 48509 TCGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGTGACAAGTTTGCGTC-C 48567 |||| |||||| | || | ||| ||| | ||| |||| || |||||||||||||| | Sbjct 443595 TCGTTAAGGTGCGAATGCGAACCACCAAGATCCCCCAGATTGGAGACAAGTTTGCGTCGC 443654 Query 48568 TTCACGGCGCAAAAGGGGACATGTGGAGC--CGTCCTGACCCAGGAGGACATGCCCTTCG 48625 |||||| || ||||| || ||| | ||| | ||| | ||||||||||| ||| Sbjct 443655 GTCACGGA-CAGAAGGGTACCATTGGTGTGACGTACCGAC--ATGAGGACATGCCGTTCT 443711 Query 48626 ACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGA 48685 | || || ||||| ||||| |||||||||||||||||||| |||| || | |||| Sbjct 443712 CCGCCGAGGGAGTGGTCCCCGATATCATCATCAACCCCCACGCCATTCCTTCGCGTATGA 443771 Query 48686 CCGT 48689 |||| Sbjct 443772 CCGT 443775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369507069402299