Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31]
29 sequences; 20,308,363 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq6 197 2e-45
seq2 161 1e-34
>seq6
Length=3777980
Score = 197 bits (218), Expect = 2e-45
Identities = 380/558 (68%), Gaps = 2/558 (0%)
Strand=Plus/Minus
Query 77916 TATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCAC 77975
|| ||| | | ||| ||||| || | || || || | || ||||| || || ||||||
Sbjct 3775720 TACAGCTGCTTAAACTCATCACCATAGACGTCGTCAAGACCGGGGCACTCGTTGGGGCAC 3775661
Query 77976 ATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGA 78035
|||| | ||| ||| | | | || ||||| | ||| || || || || ||||| |||
Sbjct 3775660 ATCAGGGTCCATTCAGCGTTCTGCTCGACTCGCTCCATGAACAGGTCGGGGATCCACAGA 3775601
Query 78036 GCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGA 78095
|| | || || ||||||| || | ||||| ||||| |||||| || |||
Sbjct 3775600 GCCAGGAACAGGTCTCGGGCTCGAATCTCTTCCTTTCCGTGGTTCTTTCGCAGCTCGCAG 3775541
Query 78096 AACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTA 78155
||||| | ||||| ||||| || || || || ||||| | | |||||||| ||
Sbjct 3775540 AACTCGAAGATATCGTCGTGCCAGGGCTCAAGGTACATTGCAAAGGCACCAGGTCGCTTG 3775481
Query 78156 TTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 78215
|| ||||||||||| | |||| ||||||||| ||||| || | || ||| || | |||
Sbjct 3775480 TTGCCTCCCTGATCAACGTATCGGGCGGTGTTGTTATAGACACGCAGCATGGGCACGATA 3775421
Query 78216 CCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATG 78275
||||| || ||||| || ||||||| ||| || ||| | || || || || ||
Sbjct 3775420 CCGTTGGAGGTTCCGTTAGTTCCAGCAATGTAGGAGCCAGTAGCTCGGATGTTGTGGATA 3775361
Query 78276 GATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAG 78335
|| | || || || || || ||| || || ||||| || ||| | |||||||||
Sbjct 3775360 GACAGACCGATACCGCCGGCAGACTTGGAAATCAGAGCACAGGTTTTGAGGGTATCGTAG 3775301
Query 78336 ATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGA 78395
|| || || || ||| ||| ||||||| | ||| ||||| ||||| ||| | ||
Sbjct 3775300 ATGCCGTCGATGGAGTCGTCCTTCATGTTGACAAGGAAACACGACGACATCTGAGGCTGG 3775241
Query 78396 ACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGA-AAGTAG 78454
|||||| || || | | || || || || || || || | || | ||| | |||
Sbjct 3775240 GGAGTTCCGGCGTTGTAGAGAGTGGGGGAAGCGTGAGTGAAGTACTTCTGAGACATATAG 3775181
Query 78455 ATTGTATGTTTCAATAGC 78472
||||| || ||||| ||
Sbjct 3775180 -TTGTAGGTCTCAATGGC 3775164
>seq2
Length=3052417
Score = 161 bits (178), Expect = 1e-34
Identities = 391/588 (66%), Gaps = 8/588 (1%)
Strand=Plus/Plus
Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200
|| ||||| ||| || ||||| || |||| || | ||||| || || |||||
Sbjct 506883 CAGGCAAAGTCAGTGTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTGAGG 506942
Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAAT 48260
|| ||||| || || || || |||||||| || || | |||||||| || || |||||
Sbjct 506943 CCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCGGAGAAGAAG 507002
Query 48261 ATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGG---CTTCGTTGTGT 48317
||||| || ||||| ||||| || | |||| |||||| | ||| |||||| |
Sbjct 507003 ATGCCCTCGACGGCGGCAAAGGCAATGAGTCGCTCTCCAAAGGTGGACTCTTCGTCGGAG 507062
Query 48318 ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 48377
|||||| | ||||| || ||||| ||||| | || || || || || || || ||
Sbjct 507063 ATCCACTTGAGGGCCCAGTCGGCCTTTTTCTTGATGCAGGGGATGGTCTCGATGGCGTTG 507122
Query 48378 AAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATT 48437
|| || || || || ||| || || | ||| || || || | || || |
Sbjct 507123 AACAGGTAGGTTCGCTCTTTGGGGTCCTTGATGTATGTGTCGATCAGCAGCGAGTAGGTC 507182
Query 48438 TCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATC 48497
|||||||| || || || || ||||| || ||||| || || | || || | | |
Sbjct 507183 TCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCCTCGGGGGCC 507242
Query 48498 TGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCA 48557
|| ||||| | ||||| ||| ||| ||||| || || || || || ||||||
Sbjct 507243 TGCACCTCGCCGGAGAATCGCTCAACCAGGTTCTCGTTAACGATACCGTCGGAGGCAGCA 507302
Query 48558 AAAAATGCTAATACATGTTTAATAAAATAT---TTTTCGTTGGA-AGTCAGTTTATTCCA 48613
|| ||||| | || || || || | | |||||| |||| ||| | |||
Sbjct 507303 AAGAATGCGAGAACGTGGGAGATGAAGAACCGCTCATCGTTGTTGAGTCTGTTC-TCCCA 507361
Query 48614 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTT 48673
|||| || || ||| | ||| | || ||||||||||| || || ||||| || ||
Sbjct 507362 GTCACCCATGTCCTTTCCAAGATCAATCTCCTCAGCTGTCCAGAAAGAGGCCTCGGCCTT 507421
Query 48674 TTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAA 48721
|| ||||| | ||| || || ||| ||||| ||||| | |||||
Sbjct 507422 CTTGTACATCTGCCAGATTTCGTGGTACTGGATGGGGAAGAGCACAAA 507469
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694668548182560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |