Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31] 29 sequences; 20,308,363 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq6 197 2e-45 seq2 161 1e-34 >seq6 Length=3777980 Score = 197 bits (218), Expect = 2e-45 Identities = 380/558 (68%), Gaps = 2/558 (0%) Strand=Plus/Minus Query 77916 TATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCAC 77975 || ||| | | ||| ||||| || | || || || | || ||||| || || |||||| Sbjct 3775720 TACAGCTGCTTAAACTCATCACCATAGACGTCGTCAAGACCGGGGCACTCGTTGGGGCAC 3775661 Query 77976 ATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGA 78035 |||| | ||| ||| | | | || ||||| | ||| || || || || ||||| ||| Sbjct 3775660 ATCAGGGTCCATTCAGCGTTCTGCTCGACTCGCTCCATGAACAGGTCGGGGATCCACAGA 3775601 Query 78036 GCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGA 78095 || | || || ||||||| || | ||||| ||||| |||||| || ||| Sbjct 3775600 GCCAGGAACAGGTCTCGGGCTCGAATCTCTTCCTTTCCGTGGTTCTTTCGCAGCTCGCAG 3775541 Query 78096 AACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTA 78155 ||||| | ||||| ||||| || || || || ||||| | | |||||||| || Sbjct 3775540 AACTCGAAGATATCGTCGTGCCAGGGCTCAAGGTACATTGCAAAGGCACCAGGTCGCTTG 3775481 Query 78156 TTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 78215 || ||||||||||| | |||| ||||||||| ||||| || | || ||| || | ||| Sbjct 3775480 TTGCCTCCCTGATCAACGTATCGGGCGGTGTTGTTATAGACACGCAGCATGGGCACGATA 3775421 Query 78216 CCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATG 78275 ||||| || ||||| || ||||||| ||| || ||| | || || || || || Sbjct 3775420 CCGTTGGAGGTTCCGTTAGTTCCAGCAATGTAGGAGCCAGTAGCTCGGATGTTGTGGATA 3775361 Query 78276 GATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAG 78335 || | || || || || || ||| || || ||||| || ||| | ||||||||| Sbjct 3775360 GACAGACCGATACCGCCGGCAGACTTGGAAATCAGAGCACAGGTTTTGAGGGTATCGTAG 3775301 Query 78336 ATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGA 78395 || || || || ||| ||| ||||||| | ||| ||||| ||||| ||| | || Sbjct 3775300 ATGCCGTCGATGGAGTCGTCCTTCATGTTGACAAGGAAACACGACGACATCTGAGGCTGG 3775241 Query 78396 ACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGA-AAGTAG 78454 |||||| || || | | || || || || || || || | || | ||| | ||| Sbjct 3775240 GGAGTTCCGGCGTTGTAGAGAGTGGGGGAAGCGTGAGTGAAGTACTTCTGAGACATATAG 3775181 Query 78455 ATTGTATGTTTCAATAGC 78472 ||||| || ||||| || Sbjct 3775180 -TTGTAGGTCTCAATGGC 3775164 >seq2 Length=3052417 Score = 161 bits (178), Expect = 1e-34 Identities = 391/588 (66%), Gaps = 8/588 (1%) Strand=Plus/Plus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || ||||| ||| || ||||| || |||| || | ||||| || || ||||| Sbjct 506883 CAGGCAAAGTCAGTGTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTGAGG 506942 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAAT 48260 || ||||| || || || || |||||||| || || | |||||||| || || ||||| Sbjct 506943 CCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCGGAGAAGAAG 507002 Query 48261 ATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGG---CTTCGTTGTGT 48317 ||||| || ||||| ||||| || | |||| |||||| | ||| |||||| | Sbjct 507003 ATGCCCTCGACGGCGGCAAAGGCAATGAGTCGCTCTCCAAAGGTGGACTCTTCGTCGGAG 507062 Query 48318 ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 48377 |||||| | ||||| || ||||| ||||| | || || || || || || || || Sbjct 507063 ATCCACTTGAGGGCCCAGTCGGCCTTTTTCTTGATGCAGGGGATGGTCTCGATGGCGTTG 507122 Query 48378 AAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATT 48437 || || || || || ||| || || | ||| || || || | || || | Sbjct 507123 AACAGGTAGGTTCGCTCTTTGGGGTCCTTGATGTATGTGTCGATCAGCAGCGAGTAGGTC 507182 Query 48438 TCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATC 48497 |||||||| || || || || ||||| || ||||| || || | || || | | | Sbjct 507183 TCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCCTCGGGGGCC 507242 Query 48498 TGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCA 48557 || ||||| | ||||| ||| ||| ||||| || || || || || |||||| Sbjct 507243 TGCACCTCGCCGGAGAATCGCTCAACCAGGTTCTCGTTAACGATACCGTCGGAGGCAGCA 507302 Query 48558 AAAAATGCTAATACATGTTTAATAAAATAT---TTTTCGTTGGA-AGTCAGTTTATTCCA 48613 || ||||| | || || || || | | |||||| |||| ||| | ||| Sbjct 507303 AAGAATGCGAGAACGTGGGAGATGAAGAACCGCTCATCGTTGTTGAGTCTGTTC-TCCCA 507361 Query 48614 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTT 48673 |||| || || ||| | ||| | || ||||||||||| || || ||||| || || Sbjct 507362 GTCACCCATGTCCTTTCCAAGATCAATCTCCTCAGCTGTCCAGAAAGAGGCCTCGGCCTT 507421 Query 48674 TTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAA 48721 || ||||| | ||| || || ||| ||||| ||||| | ||||| Sbjct 507422 CTTGTACATCTGCCAGATTTCGTGGTACTGGATGGGGAAGAGCACAAA 507469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668548182560