Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31] 29 sequences; 20,308,363 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq6 206 4e-48 seq2 141 1e-28 >seq6 Length=3777980 Score = 206 bits (228), Expect = 4e-48 Identities = 1173/1864 (63%), Gaps = 25/1864 (1%) Strand=Plus/Minus Query 75377 GTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGA 75436 |||||||| ||||| | | || | | || || || ||||||||||| || || ||| Sbjct 3776869 GTGAACTGGATGGGGGCAGCAGCAGCCATGGTTCGCAGGTAGTACATACCTGTCTTGAGA 3776810 Query 75437 CCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATA 75496 ||| |||| |||||||| |||||| || || ||| | || || || Sbjct 3776809 CCCTTCTTCCAGCCGTAGAAGTGCATGGAGGTGAGCTTGCCCATGGTAGGGTCCTTGATG 3776750 Query 75497 TGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATA 75556 ||||| || | |||||| || || ||||| | || ||||| ||||| | || Sbjct 3776749 TGAATGTTGAGGGACTGAGACTGGTCAATGAAGGGGGATCGGTCAGCGGCCATCTCAATG 3776690 Query 75557 ATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGA 75616 || ||| |||| ||| ||||| | || ||| | | | ||||| || | |||| Sbjct 3776689 ATTCGCTTCTGAGAAATCTCCCACACGGTCTTGTACAGGTCCTTGATTTCCTGGGGAATG 3776630 Query 75617 TTTG---TATTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTGATCTCATCATTC 75673 || | | || || | ||||||| |||| | |||| ||||| || || ||| Sbjct 3776629 TTGGGGATGTTCTGCACGGATCCGTTGTCAGCAACAATTCGGTTCTTCATGGTCTCGTTC 3776570 Query 75674 CACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCA 75733 |||| ||| | | | || || || || ||||| || ||||| ||| Sbjct 3776569 CACAGGCCAACCTCAACCAGGTCCTTGAGCAGCCAGGGGTTGACAATCTGGAATTCACCA 3776510 Query 75734 GACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCC 75793 | | |||| ||||| |||||| || || || || || | | |||||| || Sbjct 3776509 GCAAGAACTCGTCGAGAGTAAATGTTGGAAGTGTAGGGCTCGAAGCACTCATTGAAACCA 3776450 Query 75794 AAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCA 75853 | ||| || | ||| || ||||| ||||| || || ||||| | |||| | |||| Sbjct 3776449 AGAATCTGGGAAGTGGAGGCAGTGGGCATGGGAGCGACCAACAGCGAGTTTCGCATACCA 3776390 Query 75854 TGTGTTC-TGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATC 75912 || ||| |||| || | || |||| | ||| ||||| || || || || || | Sbjct 3776389 -GTCTTCATGATCTTGGCCTTGAGATCGTCCCACTCCCACAGCTCGGAAGGAGTCACGTT 3776331 Query 75913 CCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGT 75972 |||||||||| | || || || ||| ||| || || | | || ||||| | Sbjct 3776330 CCAGAGATCGAACTGGAGGTCACCCTTGGAGGCAGGGGAGCCCTGGAAGGTCTCGTAGGC 3776271 Query 75973 CCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAA 76032 ||||||| ||| | ||| || || || | || |||| || || || ||||| Sbjct 3776270 ACCGTCCTCAAGAGCCATCTCGTAAGAGGCTTCGACAGCTCCGTGGTAGATGGTCTCGAA 3776211 Query 76033 AATCTTCTTATTAAGAT-CTTGCGCTTCAAG-ACTATCAAAAGGATAATGTAAAAGAATA 76090 |||| | || || | |||| || | | ||| |||| || ||| | || Sbjct 3776210 GATCTGGATGTTGAGCTTCTTGGCCTCCTCGGACT--CAAATGGGAGTCGTAGAGCCATG 3776153 Query 76091 AATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATT 76150 || | || || || ||||| || || | | |||| |||| |||| | | || || | Sbjct 3776152 AAGGTGTCGGCCAGACCCTGGACACCCAGAGCAATGGGTCGGTGTCGCATGTTAGACTTC 3776093 Query 76151 TCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACT 76210 | || || || | ||||| || || || || || ||||| |||| |||| Sbjct 3776092 TTGGCCTCGGGGACCGGGTAGTAGTTTCGGTCGATGATAGCGTTGAGGTTTCGCACAATG 3776033 Query 76211 ACTTTAACCACGTCCTTTAGTTT---GA----GAAAATCAAATT--TTCCATCTA---TC 76258 || || | | ||| | || || || | | | | | || | | ||| | Sbjct 3776032 ACCTTGGCAATGTCGTGCAGCTTCTTGAAGTCGTAGAACGAGTTGGTGTCGTCTCGAGTA 3775973 Query 76259 ACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCA 76318 ||||| | ||||| || || || || || || || || ||||||| || | | Sbjct 3775972 ACAAAAGTGGGCAGAGCGATGGAAGCCAGGTTGCAGACAGCGACCTCATCAGGAGAAGAG 3775913 Query 76319 TATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTG 76378 || | || ||||| ||| || ||| | |||| || ||||| || || | |||||| Sbjct 3775912 TACTCTACAATCTCACAGCACAGGTTAGAAGACTTAATTGTTCCGAGGTTCTTCTGGTTG 3775853 Query 76379 CTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGAT 76438 |||| ||| || |||||||| || || | || || | || | || |||| | Sbjct 3775852 GACTTTCGGTTGCAGGAGTCCTTGTACAGCATGAAGGGGTTGCCGGACTCGGTCTGGCAG 3775793 Query 76439 TCGATAATAGATTTCCAGACGACTCTAG-CTTTTATTATAGATTTGTATCGCTTCTCTCT 76497 |||| ||| | ||| | | ||| | | || | | | ||| ||| | Sbjct 3775792 TCGAGAATGTGGTACCACA-GCTTCTGGGCAGGGATGGTTCGTCGGCCTCGGCCCTCCTT 3775734 Query 76498 TTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACA 76557 || || || || | | | | ||| ||||| || | || || || | ||| || || Sbjct 3775733 CTCGTACTGCTCGTACAGCTGCTTAAACTCATCACCATAGACGTCGTCAAGACCGGGGCA 3775674 Query 76558 TTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATC 76617 || || || ||||||| | ||| ||| | | | || || || | ||| || || || Sbjct 3775673 CTCGTTGGGGCACATCAGGGTCCATTCAGCGTTCTGCTCGACTCGCTCCATGAACAGGTC 3775614 Query 76618 AGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTT 76677 || ||||| ||||| | || || ||||||| || | ||||| ||||| ||||| Sbjct 3775613 GGGGATCCACAGAGCCAGGAACAGGTCTCGGGCTCGAATCTCTTCCTTTCCGTGGTTCTT 3775554 Query 76678 TTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAAC 76737 | || || |||||| | ||||| ||||| || || || || || || | | Sbjct 3775553 TCGCAGCTCGCAGAACTCGAAGATATCGTCGTGCCAGGGCTCAAGGTACATTGCAAAGGC 3775494 Query 76738 ACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAA 76797 ||| ||||| || || ||||||||||| | |||| ||| ||||| ||||| || | || Sbjct 3775493 ACCAGGTCGCTTGTTGCCTCCCTGATCAACGTATCGGGCGGTGTTGTTATAGACACGCAG 3775434 Query 76798 CATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACG 76857 ||| || | || ||||| || || || || ||||||| ||| || ||| || || Sbjct 3775433 CATGGGCACGATACCGTTGGAGGTTCCGTTAGTTCCAGCAATGTAGGAGCCAGTAGCTCG 3775374 Query 76858 AATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTT 76917 || || ||||| || || || || || || || || || ||||||||| ||| Sbjct 3775373 GATGTTGTGGATAGACAGACCGATACCGCCGGCAGACTTGGAAATCAGAGCACAGGTTTT 3775314 Query 76918 CAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGA 76977 | || || |||||||| || || || ||| ||||||| | ||| ||||| || Sbjct 3775313 GAGGGTATCGTAGATGCCGTCGATGGAGTCGTCCTTCATGTTGACAAGGAAACACGACGA 3775254 Query 76978 CATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTT 77037 ||| ||| | || |||||| || || | | || || || || |||||||| | || Sbjct 3775253 CATCTGAGGCTGGGGAGTTCCGGCGTTGTAGAGAGTGGGGGAAGCGTGAGTGAAGTACTT 3775194 Query 77038 TTCAGA-AAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTA 77096 | ||| | ||| ||||| || ||||| | | || | || || || | Sbjct 3775193 CTGAGACATATAG-TTGTAGGTCTCAATGGCCCGGGCAATGTTGTCGCCGTGGATACCGA 3775135 Query 77097 CAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACA 77156 ||| ||| ||||| | ||| || || ||||| || || | || | | || || Sbjct 3775134 CAGAGACTCGCATGATCATCTGTTGGGGTCGCTCGGCAACAGCACCGTTGACTCGCAGCA 3775075 Query 77157 AGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAA 77216 ||||| | |||| || || || ||||| |||||||| | ||||||| ||||| | Sbjct 3775074 GGTATGCTCGCTCCAGGGTCTTGAAGCCAAAGTAGTTGTAGGTGAAGTCTCGGTCGTAGA 3775015 Query 77217 TAAT 77220 ||| Sbjct 3775014 GAAT 3775011 >seq2 Length=3052417 Score = 141 bits (156), Expect = 1e-28 Identities = 360/545 (66%), Gaps = 6/545 (1%) Strand=Plus/Plus Query 46672 TCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCG 46731 ||||| || || ||||| |||||||| || || ||||| |||||||| || || | ||| Sbjct 506925 TCGTTGGAGAAGGTGAGGCCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCG 506984 Query 46732 AAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAA 46791 ||||| || || ||||| ||||| || || || || || || | |||| |||||| | Sbjct 506985 AAAGAGCCGGAGAAGAAGATGCCCTCGACGGCGGCAAAGGCAATGAGTCGCTCTCCAAAG 507044 Query 46792 CTGGCATCATTAT--GA-ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGC 46848 ||| || | | || |||||| | | ||||| || ||||||||||| | || || Sbjct 507045 GTGGACTCTTCGTCGGAGATCCACTTGAGGGCCCAGTCGGCCTTTTTCTTGATGCAGGGG 507104 Query 46849 ATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCT 46908 || || || || || || || || || || || | || || | ||||| || Sbjct 507105 ATGGTCTCGATGGCGTTGAACAGGTAGGTTCGCTCTTTGGGGTCCTTGATGTATGTGTCG 507164 Query 46909 ATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAA 46968 || | || || | || || || ||||| || || ||||| || ||||| || Sbjct 507165 ATCAGCAGCGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAG 507224 Query 46969 CATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACT 47028 || | || || | ||| ||||| | ||||| ||| || ||||| || || Sbjct 507225 CACTTGGCCTCGGGGGCCTGCACCTCGCCGGAGAATCGCTCAACCAGGTTCTCGTTAACG 507284 Query 47029 ATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTA 47088 || || || |||||||| ||||| | || || || || | |||||| | Sbjct 507285 ATACCGTCGGAGGCAGCAAAGAATGCGAGAACGTGGGAGATGAAGAACCGCTCATCGTTG 507344 Query 47089 GTCAGTTTATTC---CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAG 47145 | ||| | ||| |||||| || || ||| | ||| | || |||||||||||| Sbjct 507345 TTGAGTCTGTTCTCCCAGTCACCCATGTCCTTTCCAAGATCAATCTCCTCAGCTGTCCAG 507404 Query 47146 AATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATA 47205 || || ||||| || || || ||||| | ||| || || | || ||||| || || | Sbjct 507405 AAAGAGGCCTCGGCCTTCTTGTACATCTGCCAGATTTCGTGGTACTGGATGGGGAAGAGC 507464 Query 47206 ACAAA 47210 ||||| Sbjct 507465 ACAAA 507469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712934141561280