Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31] 29 sequences; 20,308,363 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq6 127 5e-24 seq5 86.0 1e-11 >seq6 Length=3777980 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| || || ||||| ||||| ||||| || ||||||||||| |||| | ||||| Sbjct 1245202 GAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTTCG 1245143 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || || || |||||||||||||| | ||||||||||| | |||||| || Sbjct 1245142 GCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGGATTCCCTC 1245083 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || ||||| | || | | |||| || ||| || || || || Sbjct 1245082 CTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCCACCTCGAGGGT 1245023 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCA 152103 ||||| ||||| || || ||||| || |||| |||| Sbjct 1245022 GATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 1244985 Score = 122 bits (134), Expect = 2e-22 Identities = 159/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| ||||| ||||| ||||| ||||| || ||||||||||| || | | |||| Sbjct 1363892 AGTCGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCGG 1363833 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 || || || || || |||||||||||||| | ||||||||||| | ||||| ||| Sbjct 1363832 CCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCC 1363773 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || ||||| | || | | |||| ||| ||| || || || || Sbjct 1363772 TTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTG 1363713 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTT 152106 ||||| || || || || ||||| || || | |||||||| Sbjct 1363712 ATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATTT 1363673 >seq5 Length=4047401 Score = 86.0 bits (94), Expect = 1e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| ||| || ||||| ||||| ||||| || || |||||||| || | | |||| Sbjct 2184053 GAGTCGGAGAACGAGATGGAGAGTGGACTCCTTCTGAATGTTGTAGTCAGACAGGGTTCG 2183994 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || |||||||| || || | ||||||||||| | ||||| || Sbjct 2183993 GCCATCCTCGAGCTGCTTACCGGCGAAAATCAGTCGCTGCTGGTCCGGAGGAATTCCCTC 2183934 Query 152006 CTTTTCTTGAATTTT 152020 ||| || ||||| || Sbjct 2183933 CTTGTCCTGAATCTT 2183919 Score = 86.0 bits (94), Expect = 1e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| || || ||||| ||||| ||||| || ||||||||||| |||| | ||||| Sbjct 2184455 GAGTCGAAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTTCG 2184396 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || || || || || || | ||||||||||| | ||||| || Sbjct 2184395 GCCATCCTCGAGCTGCTTACCAGCAAAAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTC 2184336 Query 152006 CTTTTCTTGAATTTT 152020 ||| || ||||| || Sbjct 2184335 CTTGTCCTGAATCTT 2184321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153820371283459