Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31]
29 sequences; 20,308,363 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq6 127 5e-24
seq5 86.0 1e-11
>seq6
Length=3777980
Score = 127 bits (140), Expect = 5e-24
Identities = 159/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||||| || || ||||| ||||| ||||| || ||||||||||| |||| | |||||
Sbjct 1245202 GAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTTCG 1245143
Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005
|| || || || || |||||||||||||| | ||||||||||| | |||||| ||
Sbjct 1245142 GCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGGATTCCCTC 1245083
Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065
||| || || || || ||||| | || | | |||| || ||| || || || ||
Sbjct 1245082 CTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCCACCTCGAGGGT 1245023
Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCA 152103
||||| ||||| || || ||||| || |||| ||||
Sbjct 1245022 GATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 1244985
Score = 122 bits (134), Expect = 2e-22
Identities = 159/220 (72%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946
|||| ||||| ||||| ||||| ||||| || ||||||||||| || | | ||||
Sbjct 1363892 AGTCGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCGG 1363833
Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006
|| || || || || |||||||||||||| | ||||||||||| | ||||| |||
Sbjct 1363832 CCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCC 1363773
Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066
|| || || || || ||||| | || | | |||| ||| ||| || || || ||
Sbjct 1363772 TTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTG 1363713
Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTT 152106
||||| || || || || ||||| || || | ||||||||
Sbjct 1363712 ATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATTT 1363673
>seq5
Length=4047401
Score = 86.0 bits (94), Expect = 1e-11
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||||| ||| || ||||| ||||| ||||| || || |||||||| || | | ||||
Sbjct 2184053 GAGTCGGAGAACGAGATGGAGAGTGGACTCCTTCTGAATGTTGTAGTCAGACAGGGTTCG 2183994
Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005
||||| || || || |||||||| || || | ||||||||||| | ||||| ||
Sbjct 2183993 GCCATCCTCGAGCTGCTTACCGGCGAAAATCAGTCGCTGCTGGTCCGGAGGAATTCCCTC 2183934
Query 152006 CTTTTCTTGAATTTT 152020
||| || ||||| ||
Sbjct 2183933 CTTGTCCTGAATCTT 2183919
Score = 86.0 bits (94), Expect = 1e-11
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||||| || || ||||| ||||| ||||| || ||||||||||| |||| | |||||
Sbjct 2184455 GAGTCGAAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTTCG 2184396
Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005
||||| || || || || || || || || | ||||||||||| | ||||| ||
Sbjct 2184395 GCCATCCTCGAGCTGCTTACCAGCAAAAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTC 2184336
Query 152006 CTTTTCTTGAATTTT 152020
||| || ||||| ||
Sbjct 2184335 CTTGTCCTGAATCTT 2184321
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153820371283459
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |