Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31]
29 sequences; 20,308,363 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq6 167 5e-36
seq5 127 4e-24
seq2 105 1e-17
>seq6
Length=3777980
Score = 167 bits (184), Expect = 5e-36
Identities = 175/230 (76%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||| || || || || || ||||| | ||| || || ||||||||||||||||
Sbjct 1363902 ACCACCTCGAAGTCGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 1363843
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| || ||||| ||||| || || || ||||| ||||| | || || ||||| ||
Sbjct 1363842 AAGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGG 1363783
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| ||||||||||| |||||||| | || ||| | ||||| ||||| |||| || ||
Sbjct 1363782 AATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 1363723
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTT 283101
||||| ||||| |||||||| || | ||||| || || ||||||||||
Sbjct 1363722 CTCGAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATTT 1363673
Score = 131 bits (144), Expect = 4e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| || || || || || || ||||| | ||| || || |||||||||||||| |
Sbjct 1245211 ACCTCCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGA 1245152
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| || ||||| ||||| || || || ||||| ||||| | || || ||||| ||
Sbjct 1245151 AAGAGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGG 1245092
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| ||||||||||| |||||||| | || ||| | || || ||||| || | || ||
Sbjct 1245091 GATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCCAC 1245032
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCA 283098
||||| ||||| ||||| || || | ||||| || || || ||||
Sbjct 1245031 CTCGAGGGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 1244985
>seq5
Length=4047401
Score = 127 bits (140), Expect = 4e-24
Identities = 123/158 (78%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001
|||||||| || || || || ||||| |||| || || ||||| ||||| ||||||
Sbjct 2184220 CCATCCTCGAGCTGCTTACCAGCAAAAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCC 2184161
Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061
||||| || ||||| | || || |||| |||||||| |||| || || |||||||||
Sbjct 2184160 TTGTCCTGAATCTTGGACTTGACATTATCAATAGTGTCAGAAGACTCAACCTCGAGAGTG 2184101
Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| ||||| || |||| |||||| ||||| ||||||||
Sbjct 2184100 ATGGTCTTTCCAGTCAGAGTCTTGACGAAAATCTGCAT 2184063
Score = 116 bits (128), Expect = 8e-21
Identities = 135/182 (74%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 317020 TCCTTCGTCGGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTG 317079
|||| || ||||| || || | ||||||||| |||| || | |||||| || |||||
Sbjct 1593201 TCCTGGGTGGGGAAACCCTCGACCTGACCGTTGGCAATGGCTCGCATCAGGGTGGACTTA 1593142
Query 317080 CCAGCACCATTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTG 317139
|||||||| || || || || ||||| || || || ||| || | ||||
Sbjct 1593141 CCAGCACCGTTAGGACCACAGAGACCGTATCGTCGGCCTCGCTTGAGTCGCAGCTGGGTT 1593082
Query 317140 TTGTTCAGAAGAATCTTACCACCATATGCCAGAGAGAACTCACAATCACACAGGTCCTCG 317199
|||||| ||||||||| |||| || ||||||||||||||||| | |||||| ||||||
Sbjct 1593081 CGGTTCAGCAGAATCTTAGCACCGTAAGCCAGAGAGAACTCACAGTTACACAGATCCTCG 1593022
Query 317200 CC 317201
||
Sbjct 1593021 CC 1593020
Score = 113 bits (124), Expect = 9e-20
Identities = 133/180 (74%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||| || || || || || ||||| | ||| || || || |||||||||||||
Sbjct 2184062 ACCACCTCGGAGTCGGAGAACGAGATGGAGAGTGGACTCCTTCTGAATGTTGTAGTCAGA 2184003
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || ||||||||||| || || || ||||| || |||| || || ||||| ||
Sbjct 2184002 CAGGGTTCGGCCATCCTCGAGCTGCTTACCGGCGAAAATCAGTCGCTGCTGGTCCGGAGG 2183943
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| ||||||||||| || ||||| | || ||| | ||||| ||||| || | |||||
Sbjct 2183942 AATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAGGACTCGAC 2183883
Score = 105 bits (116), Expect = 1e-17
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||| || || ||||| || ||||| | ||| || || |||||||||||||| | |
Sbjct 2184463 CCACCTCGGAGTCGAAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAA 2184404
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| || ||||||||||| || || || || ||||| |||| || || ||||| |||
Sbjct 2184403 AGAGTTCGGCCATCCTCGAGCTGCTTACCAGCAAAAATCAGTCGCTGCTGGTCCGGGGGA 2184344
Query 282993 ATACCCTCCTTGTCTTGGATCTT 283015
|| ||||||||||| || |||||
Sbjct 2184343 ATTCCCTCCTTGTCCTGAATCTT 2184321
Score = 87.8 bits (96), Expect = 4e-12
Identities = 111/152 (73%), Gaps = 2/152 (1%)
Strand=Plus/Minus
Query 315708 GAGACTCTCGCGGTCCACAAAGTTGGTCGGCTCATCAAGAACGATGACGTGGGGTTGTTG 315767
|||| ||||| |||| | ||||||| ||||||||||| ||||| | |||||| | ||
Sbjct 1594541 GAGAGTCTCGA--TCCAGATAGTTGGTAGGCTCATCAAGGACGATAAGATGGGGTCGCTG 1594484
Query 315768 CCATAGAGCGGCGCCGATAACGAGCTTTAGTTTTTGCCCACCAGACAGTCCACGGATGCG 315827
||| | |||| | | || ||||| | || || ||||||||||| || ||||| ||
Sbjct 1594483 CCAGGTACAGGCGGCAAGCACAAGCTTGACCTTCTGACCACCAGACAGACCTCGGATTCG 1594424
Query 315828 AGAATGAGTGGTAAATTCTGGGTCAAGGCCAA 315859
||| |||| | || || || || || ||||
Sbjct 1594423 AGAGTGAGAGACAAGCTCGGGCTCGAGACCAA 1594392
>seq2
Length=3052417
Score = 105 bits (116), Expect = 1e-17
Identities = 566/889 (64%), Gaps = 23/889 (3%)
Strand=Plus/Minus
Query 229535 CTTCCCTATTCAATACCCCGACCTCTGGGATATGTATAAGAAGGCGGTGGCAACCTTTTG 229594
|||||| || || |||| ||| ||||| | ||||| |||||||| | ||| | || ||
Sbjct 507461 CTTCCCCATCCAGTACCACGAAATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTG 507402
Query 229595 GACCACGGAGGAAGTCCCCCTA--AATGCAGACGTCGTCGACTGGCGCGAGAA---ACTC 229649
||| | ||||| | || || | ||| | | |||||| ||||| ||||
Sbjct 507401 GACAGCTGAGGAGATTGATCTTGGAAAG--GACATGGGTGACTGG---GAGAACAGACTC 507347
Query 229650 AACGACGATGAACGCCATTTCATCAAGCACATTCTCGGGTTTTTTGCAGGTTCCGACGGT 229709
||| ||||||| || |||||| ||| |||||| || ||||| | |||||||||
Sbjct 507346 AACAACGATGAGCGGTTCTTCATCTCCCACGTTCTCGCATTCTTTGCTGCCTCCGACGGT 507287
Query 229710 ATCGTGATGGAAAACTTGCA-GACTAACTTCAGCGTCGAAGTAACGGTCCCAGAGGCACG 229768
||||| | || ||| || || | ||| || ||| || || ||| |||||
Sbjct 507286 ATCGTTAACGAGAACCTGGTTGAGCGA-TTCTCCGGCGAGGTGCAGGCCCCCGAGGCCAA 507228
Query 229769 GCAGTTTTACGCATACCAGACGTTCAATGAATCTGTTCATTCGGAACAGTATGCCCTTCT 229828
| || |||| | ||||| | | || | || || || || | || ||
Sbjct 507227 GTGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCGCTGCT 507168
Query 229829 TATTGACGCGCTCATTTCCGACGAGCGAGAGCGTGCCGAACTGTTCGACGCCATCGAAAA 229888
|| ||| | ||| ||| |||||| || | |||||| |||||||||| |
Sbjct 507167 GATCGACACATACATCAAGGACCCCAAAGAGCGAACCTACCTGTTCAACGCCATCGAGAC 507108
Query 229889 CATCCCGGCGGTCCATAACAAAGCGCGTTGGGCTCAGAAGTGG--CTGGAACCCAG--TA 229944
|||||| || | || || || ||||| | |||||| || || || |
Sbjct 507107 CATCCCCTGCATCAAGAAAAAGGCCGACTGGGCCCTCAAGTGGATCTCCGACGAAGAGTC 507048
Query 229945 AATCGTTTGCAGAGCGTCTCGTCGCGTGGGTGTGCGTTGAGGGTATTCTGTTCTCCGGGA 230004
| | |||| |||||| ||| | || | | ||| ||||| || | ||||||||
Sbjct 507047 CACC-TTTGGAGAGCGACTCATTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCT 506989
Query 230005 GTTTCTGCGCCATCTTTTGGCT-ACGCAACAAGGGCGTCATGCCCGGGCTCGGTCTGTCG 230063
|||| | ||||||| ||||| | | | | ||| | ||||||| || ||| | ||
Sbjct 506988 CTTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTC-TCATGCCTGGCCTCACCTTCTCC 506930
Query 230064 AACGAATTCATCAGCAGGGACGAAGGTCTTCACCAGCAATTTGGCGAGGTCTTGTATTCG 230123
||||| ||||| | | ||||| ||||| ||| | |||| | | | | |||
Sbjct 506929 AACGAGCTCATCTCCCGAGACGAGGGTCTGCACACTGACTTTGCCTGCCTGCTTTTCTCG 506870
Query 230124 AAGCTAAATAACAAACTACCTTTC-GAA-ACGGTGAAACAAATCGTCACAGAAGTAGTTG 230181
| || | ||| || ||| ||| | || | | || | || | ||||
Sbjct 506869 CACCTTGAGAACCGAC--CCTCAAAGAAGATTGTTGAGGACGTCATTGTCGAGGCTGTTG 506812
Query 230182 CAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTG 230241
| || |||||||| || |||||| | || || |||| | || ||||| ||
Sbjct 506811 GCATCGAGCAGGAGTTCCTTACTGACGCTCTGCCCTGTGGTCTGCTTGGTATGAACGCCA 506752
Query 230242 ATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACG 230301
| || ||| | || || ||||| || || ||||| ||| | | || || || || ||
Sbjct 506751 AGCTGATGTGCCAGTACATCGAGTTTGTCGCTGACCGTCTGCTAGTTGCTCTCGGTAACT 506692
Query 230302 AGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGA 230361
|| ||||||||||||| |||||||||| || |||||| ||| || || || |
Sbjct 506691 CCAAGGTGTATAACTCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTGGCCGGCA 506632
Query 230362 AAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCGGTGT 230410
| || ||||| ||||| ||||| || ||| || || | | |||||||
Sbjct 506631 AGACCAACTTTTTCGAGAAGCGAGTGTCCGACTACCAGAAGGCCGGTGT 506583
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046738811070966
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