Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31] 29 sequences; 20,308,363 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq6 167 5e-36 seq5 127 4e-24 seq2 105 1e-17 >seq6 Length=3777980 Score = 167 bits (184), Expect = 5e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || || || || ||||| | ||| || || |||||||||||||||| Sbjct 1363902 ACCACCTCGAAGTCGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 1363843 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || ||||| ||||| || || || ||||| ||||| | || || ||||| || Sbjct 1363842 AAGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGG 1363783 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| | || ||| | ||||| ||||| |||| || || Sbjct 1363782 AATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 1363723 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTT 283101 ||||| ||||| |||||||| || | ||||| || || |||||||||| Sbjct 1363722 CTCGAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATTT 1363673 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || || || || || || ||||| | ||| || || |||||||||||||| | Sbjct 1245211 ACCTCCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGA 1245152 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || ||||| ||||| || || || ||||| ||||| | || || ||||| || Sbjct 1245151 AAGAGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGG 1245092 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| | || ||| | || || ||||| || | || || Sbjct 1245091 GATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCCAC 1245032 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCA 283098 ||||| ||||| ||||| || || | ||||| || || || |||| Sbjct 1245031 CTCGAGGGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 1244985 >seq5 Length=4047401 Score = 127 bits (140), Expect = 4e-24 Identities = 123/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 |||||||| || || || || ||||| |||| || || ||||| ||||| |||||| Sbjct 2184220 CCATCCTCGAGCTGCTTACCAGCAAAAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCC 2184161 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 ||||| || ||||| | || || |||| |||||||| |||| || || ||||||||| Sbjct 2184160 TTGTCCTGAATCTTGGACTTGACATTATCAATAGTGTCAGAAGACTCAACCTCGAGAGTG 2184101 Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| || |||| |||||| ||||| |||||||| Sbjct 2184100 ATGGTCTTTCCAGTCAGAGTCTTGACGAAAATCTGCAT 2184063 Score = 116 bits (128), Expect = 8e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 317020 TCCTTCGTCGGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTG 317079 |||| || ||||| || || | ||||||||| |||| || | |||||| || ||||| Sbjct 1593201 TCCTGGGTGGGGAAACCCTCGACCTGACCGTTGGCAATGGCTCGCATCAGGGTGGACTTA 1593142 Query 317080 CCAGCACCATTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTG 317139 |||||||| || || || || ||||| || || || ||| || | |||| Sbjct 1593141 CCAGCACCGTTAGGACCACAGAGACCGTATCGTCGGCCTCGCTTGAGTCGCAGCTGGGTT 1593082 Query 317140 TTGTTCAGAAGAATCTTACCACCATATGCCAGAGAGAACTCACAATCACACAGGTCCTCG 317199 |||||| ||||||||| |||| || ||||||||||||||||| | |||||| |||||| Sbjct 1593081 CGGTTCAGCAGAATCTTAGCACCGTAAGCCAGAGAGAACTCACAGTTACACAGATCCTCG 1593022 Query 317200 CC 317201 || Sbjct 1593021 CC 1593020 Score = 113 bits (124), Expect = 9e-20 Identities = 133/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || || || || ||||| | ||| || || || ||||||||||||| Sbjct 2184062 ACCACCTCGGAGTCGGAGAACGAGATGGAGAGTGGACTCCTTCTGAATGTTGTAGTCAGA 2184003 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||||||||| || || || ||||| || |||| || || ||||| || Sbjct 2184002 CAGGGTTCGGCCATCCTCGAGCTGCTTACCGGCGAAAATCAGTCGCTGCTGGTCCGGAGG 2183943 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| || ||||| | || ||| | ||||| ||||| || | ||||| Sbjct 2183942 AATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAGGACTCGAC 2183883 Score = 105 bits (116), Expect = 1e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || || ||||| || ||||| | ||| || || |||||||||||||| | | Sbjct 2184463 CCACCTCGGAGTCGAAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAA 2184404 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||||||||| || || || || ||||| |||| || || ||||| ||| Sbjct 2184403 AGAGTTCGGCCATCCTCGAGCTGCTTACCAGCAAAAATCAGTCGCTGCTGGTCCGGGGGA 2184344 Query 282993 ATACCCTCCTTGTCTTGGATCTT 283015 || ||||||||||| || ||||| Sbjct 2184343 ATTCCCTCCTTGTCCTGAATCTT 2184321 Score = 87.8 bits (96), Expect = 4e-12 Identities = 111/152 (73%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 315708 GAGACTCTCGCGGTCCACAAAGTTGGTCGGCTCATCAAGAACGATGACGTGGGGTTGTTG 315767 |||| ||||| |||| | ||||||| ||||||||||| ||||| | |||||| | || Sbjct 1594541 GAGAGTCTCGA--TCCAGATAGTTGGTAGGCTCATCAAGGACGATAAGATGGGGTCGCTG 1594484 Query 315768 CCATAGAGCGGCGCCGATAACGAGCTTTAGTTTTTGCCCACCAGACAGTCCACGGATGCG 315827 ||| | |||| | | || ||||| | || || ||||||||||| || ||||| || Sbjct 1594483 CCAGGTACAGGCGGCAAGCACAAGCTTGACCTTCTGACCACCAGACAGACCTCGGATTCG 1594424 Query 315828 AGAATGAGTGGTAAATTCTGGGTCAAGGCCAA 315859 ||| |||| | || || || || || |||| Sbjct 1594423 AGAGTGAGAGACAAGCTCGGGCTCGAGACCAA 1594392 >seq2 Length=3052417 Score = 105 bits (116), Expect = 1e-17 Identities = 566/889 (64%), Gaps = 23/889 (3%) Strand=Plus/Minus Query 229535 CTTCCCTATTCAATACCCCGACCTCTGGGATATGTATAAGAAGGCGGTGGCAACCTTTTG 229594 |||||| || || |||| ||| ||||| | ||||| |||||||| | ||| | || || Sbjct 507461 CTTCCCCATCCAGTACCACGAAATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTG 507402 Query 229595 GACCACGGAGGAAGTCCCCCTA--AATGCAGACGTCGTCGACTGGCGCGAGAA---ACTC 229649 ||| | ||||| | || || | ||| | | |||||| ||||| |||| Sbjct 507401 GACAGCTGAGGAGATTGATCTTGGAAAG--GACATGGGTGACTGG---GAGAACAGACTC 507347 Query 229650 AACGACGATGAACGCCATTTCATCAAGCACATTCTCGGGTTTTTTGCAGGTTCCGACGGT 229709 ||| ||||||| || |||||| ||| |||||| || ||||| | ||||||||| Sbjct 507346 AACAACGATGAGCGGTTCTTCATCTCCCACGTTCTCGCATTCTTTGCTGCCTCCGACGGT 507287 Query 229710 ATCGTGATGGAAAACTTGCA-GACTAACTTCAGCGTCGAAGTAACGGTCCCAGAGGCACG 229768 ||||| | || ||| || || | ||| || ||| || || ||| ||||| Sbjct 507286 ATCGTTAACGAGAACCTGGTTGAGCGA-TTCTCCGGCGAGGTGCAGGCCCCCGAGGCCAA 507228 Query 229769 GCAGTTTTACGCATACCAGACGTTCAATGAATCTGTTCATTCGGAACAGTATGCCCTTCT 229828 | || |||| | ||||| | | || | || || || || | || || Sbjct 507227 GTGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCGCTGCT 507168 Query 229829 TATTGACGCGCTCATTTCCGACGAGCGAGAGCGTGCCGAACTGTTCGACGCCATCGAAAA 229888 || ||| | ||| ||| |||||| || | |||||| |||||||||| | Sbjct 507167 GATCGACACATACATCAAGGACCCCAAAGAGCGAACCTACCTGTTCAACGCCATCGAGAC 507108 Query 229889 CATCCCGGCGGTCCATAACAAAGCGCGTTGGGCTCAGAAGTGG--CTGGAACCCAG--TA 229944 |||||| || | || || || ||||| | |||||| || || || | Sbjct 507107 CATCCCCTGCATCAAGAAAAAGGCCGACTGGGCCCTCAAGTGGATCTCCGACGAAGAGTC 507048 Query 229945 AATCGTTTGCAGAGCGTCTCGTCGCGTGGGTGTGCGTTGAGGGTATTCTGTTCTCCGGGA 230004 | | |||| |||||| ||| | || | | ||| ||||| || | |||||||| Sbjct 507047 CACC-TTTGGAGAGCGACTCATTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCT 506989 Query 230005 GTTTCTGCGCCATCTTTTGGCT-ACGCAACAAGGGCGTCATGCCCGGGCTCGGTCTGTCG 230063 |||| | ||||||| ||||| | | | | ||| | ||||||| || ||| | || Sbjct 506988 CTTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTC-TCATGCCTGGCCTCACCTTCTCC 506930 Query 230064 AACGAATTCATCAGCAGGGACGAAGGTCTTCACCAGCAATTTGGCGAGGTCTTGTATTCG 230123 ||||| ||||| | | ||||| ||||| ||| | |||| | | | | ||| Sbjct 506929 AACGAGCTCATCTCCCGAGACGAGGGTCTGCACACTGACTTTGCCTGCCTGCTTTTCTCG 506870 Query 230124 AAGCTAAATAACAAACTACCTTTC-GAA-ACGGTGAAACAAATCGTCACAGAAGTAGTTG 230181 | || | ||| || ||| ||| | || | | || | || | |||| Sbjct 506869 CACCTTGAGAACCGAC--CCTCAAAGAAGATTGTTGAGGACGTCATTGTCGAGGCTGTTG 506812 Query 230182 CAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTG 230241 | || |||||||| || |||||| | || || |||| | || ||||| || Sbjct 506811 GCATCGAGCAGGAGTTCCTTACTGACGCTCTGCCCTGTGGTCTGCTTGGTATGAACGCCA 506752 Query 230242 ATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACG 230301 | || ||| | || || ||||| || || ||||| ||| | | || || || || || Sbjct 506751 AGCTGATGTGCCAGTACATCGAGTTTGTCGCTGACCGTCTGCTAGTTGCTCTCGGTAACT 506692 Query 230302 AGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGA 230361 || ||||||||||||| |||||||||| || |||||| ||| || || || | Sbjct 506691 CCAAGGTGTATAACTCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTGGCCGGCA 506632 Query 230362 AAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCGGTGT 230410 | || ||||| ||||| ||||| || ||| || || | | ||||||| Sbjct 506631 AGACCAACTTTTTCGAGAAGCGAGTGTCCGACTACCAGAAGGCCGGTGT 506583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738811070966