Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31]
29 sequences; 20,308,363 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq6 188 2e-42
seq5 132 1e-25
>seq6
Length=3777980
Score = 188 bits (208), Expect = 2e-42
Identities = 173/219 (79%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| || || || || || || || || || ||||||||||||||||| ||| |||
Sbjct 1244987 CAAATCTTTGTCAAGACCCTTACTGGCAAGACTATCACCCTCGAGGTGGAGTCCTCTGAC 1245046
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || |||||||| ||||| |||||||| || |||||||| |||||||||||
Sbjct 1245047 ACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCGGACCAGCAG 1245106
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||||||||||||||||| || |||||||| || || | |||||| |||| || ||| ||
Sbjct 1245107 CGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACTCTTTCCGACTACAACATC 1245166
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|| || || || || || ||||| ||| || ||||| ||
Sbjct 1245167 CAGAAGGAGTCCACTCTCCATCTCGTTCTGCGACTCCGA 1245205
Score = 167 bits (184), Expect = 6e-36
Identities = 166/215 (77%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||| || || || || || || || || ||||||||||||||||| || |||
Sbjct 1363678 CAGATTTTTGTCAAGACCCTTACCGGTAAGACTATCACCCTCGAGGTGGAGTCTTCCGAC 1363737
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| |||||||| ||||| |||||||| || ||||| || |||||||||||
Sbjct 1363738 ACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAGCAG 1363797
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||||||||||||||||| || |||||||| || || | || ||| | || || ||| ||
Sbjct 1363798 CGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACCCTTTCTGACTACAACATC 1363857
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138
|| || || || || || ||||| || || ||||
Sbjct 1363858 CAGAAGGAGTCCACTCTCCATCTCGTCCTGCGACT 1363892
>seq5
Length=4047401
Score = 132 bits (146), Expect = 1e-25
Identities = 129/166 (78%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 177977 CTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGA 178036
||| ||||||||||| |||||||| |||||||||||||| || ||||| ||||||||
Sbjct 2183891 CTCCGACACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCGGA 2183950
Query 178037 CCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096
|||||| ||||| || |||||||| || |||||||| ||||| | || || | || ||
Sbjct 2183951 CCAGCAGCGACTGATTTTCGCCGGTAAGCAGCTCGAGGATGGCCGAACCCTGTCTGACTA 2184010
Query 178097 TAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
||| | || || || || || || ||||| ||| | ||||| ||
Sbjct 2184011 CAACATTCAGAAGGAGTCCACTCTCCATCTCGTTCTCCGACTCCGA 2184056
Score = 127 bits (140), Expect = 5e-24
Identities = 121/155 (78%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || ||||| || ||||| || ||||| |||||||| || || |||
Sbjct 2184066 CAGATTTTCGTCAAGACTCTGACTGGAAAGACCATCACTCTCGAGGTTGAGTCTTCTGAC 2184125
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || ||||| |||||||||||||| || ||||| || |||||||||||
Sbjct 2184126 ACTATTGATAATGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCCCCGGACCAGCAG 2184185
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078
||||| || || || || || |||||||| |||||
Sbjct 2184186 CGACTGATTTTTGCTGGTAAGCAGCTCGAGGATGG 2184220
Score = 114 bits (126), Expect = 3e-20
Identities = 108/138 (78%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064
|||||||||||||| || ||||| || ||||||||||| ||||| || || || || ||
Sbjct 2184321 AAGATTCAGGACAAGGAGGGAATTCCCCCGGACCAGCAGCGACTGATTTTTGCTGGTAAG 2184380
Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124
|||||||| ||||| | |||||| |||| || ||| |||| || || || || || |||
Sbjct 2184381 CAGCTCGAGGATGGCCGAACTCTTTCCGACTACAACATCCAGAAGGAGTCCACTCTCCAT 2184440
Query 178125 CTTGTTTTGAGACTCAGA 178142
|| ||| | ||||| ||
Sbjct 2184441 CTCGTTCTTCGACTCCGA 2184458
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203730752738626
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |