Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31] 29 sequences; 20,308,363 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq6 188 2e-42 seq5 132 1e-25 >seq6 Length=3777980 Score = 188 bits (208), Expect = 2e-42 Identities = 173/219 (79%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || || || || || || ||||||||||||||||| ||| ||| Sbjct 1244987 CAAATCTTTGTCAAGACCCTTACTGGCAAGACTATCACCCTCGAGGTGGAGTCCTCTGAC 1245046 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| ||||| |||||||| || |||||||| ||||||||||| Sbjct 1245047 ACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCGGACCAGCAG 1245106 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||||||||| || |||||||| || || | |||||| |||| || ||| || Sbjct 1245107 CGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACTCTTTCCGACTACAACATC 1245166 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || || || || || ||||| ||| || ||||| || Sbjct 1245167 CAGAAGGAGTCCACTCTCCATCTCGTTCTGCGACTCCGA 1245205 Score = 167 bits (184), Expect = 6e-36 Identities = 166/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || || || || || || || ||||||||||||||||| || ||| Sbjct 1363678 CAGATTTTTGTCAAGACCCTTACCGGTAAGACTATCACCCTCGAGGTGGAGTCTTCCGAC 1363737 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || ||||| || ||||||||||| Sbjct 1363738 ACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAGCAG 1363797 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||||||||| || |||||||| || || | || ||| | || || ||| || Sbjct 1363798 CGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACCCTTTCTGACTACAACATC 1363857 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || || || || || || ||||| || || |||| Sbjct 1363858 CAGAAGGAGTCCACTCTCCATCTCGTCCTGCGACT 1363892 >seq5 Length=4047401 Score = 132 bits (146), Expect = 1e-25 Identities = 129/166 (78%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 177977 CTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGA 178036 ||| ||||||||||| |||||||| |||||||||||||| || ||||| |||||||| Sbjct 2183891 CTCCGACACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCGGA 2183950 Query 178037 CCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096 |||||| ||||| || |||||||| || |||||||| ||||| | || || | || || Sbjct 2183951 CCAGCAGCGACTGATTTTCGCCGGTAAGCAGCTCGAGGATGGCCGAACCCTGTCTGACTA 2184010 Query 178097 TAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||| | || || || || || || ||||| ||| | ||||| || Sbjct 2184011 CAACATTCAGAAGGAGTCCACTCTCCATCTCGTTCTCCGACTCCGA 2184056 Score = 127 bits (140), Expect = 5e-24 Identities = 121/155 (78%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || ||||| || ||||| || ||||| |||||||| || || ||| Sbjct 2184066 CAGATTTTCGTCAAGACTCTGACTGGAAAGACCATCACTCTCGAGGTTGAGTCTTCTGAC 2184125 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| |||||||||||||| || ||||| || ||||||||||| Sbjct 2184126 ACTATTGATAATGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCCCCGGACCAGCAG 2184185 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 ||||| || || || || || |||||||| ||||| Sbjct 2184186 CGACTGATTTTTGCTGGTAAGCAGCTCGAGGATGG 2184220 Score = 114 bits (126), Expect = 3e-20 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 |||||||||||||| || ||||| || ||||||||||| ||||| || || || || || Sbjct 2184321 AAGATTCAGGACAAGGAGGGAATTCCCCCGGACCAGCAGCGACTGATTTTTGCTGGTAAG 2184380 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 |||||||| ||||| | |||||| |||| || ||| |||| || || || || || ||| Sbjct 2184381 CAGCTCGAGGATGGCCGAACTCTTTCCGACTACAACATCCAGAAGGAGTCCACTCTCCAT 2184440 Query 178125 CTTGTTTTGAGACTCAGA 178142 || ||| | ||||| || Sbjct 2184441 CTCGTTCTTCGACTCCGA 2184458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730752738626