Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001307795.1_202016-05-31]
29 sequences; 20,308,363 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq6 150 2e-31
seq5 113 4e-20
>seq6
Length=3777980
Score = 150 bits (166), Expect = 2e-31
Identities = 174/232 (75%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691
||| || || || || || | || ||||| || ||| ||||||||| ||||| |||||
Sbjct 1363905 ACCACCACCTCGAAGTCGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTC 1363846
Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751
|| ||||| || |||| ||||||||||| |||||||| || || ||||| |||||||
Sbjct 1363845 AGAAAGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGG 1363786
Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACT 41810
||||| | |||||||||| ||| || ||| ||| | | | |||||| ||||
Sbjct 1363785 GGGAATTCCCTCCTTGTCCTGGATCTTGGACTT-GACGTTGTCGATGGTGTCGGAAGACT 1363727
Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||||| | || || || ||||| || || ||||| || |||||||||||
Sbjct 1363726 CCACCTCGAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCAT 1363675
Score = 123 bits (136), Expect = 2e-23
Identities = 165/227 (73%), Gaps = 2/227 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | || ||||| || ||| ||||||||| ||||| ||||||||
Sbjct 1245210 CCTCCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAA 1245151
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || |||| ||||||||||| |||||||| || || ||||| ||||||| |||
Sbjct 1245150 AGAGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGG 1245091
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | |||||||||| ||| || ||| ||| | | | ||||| ||||||||
Sbjct 1245090 ATTCCCTCCTTGTCCTGGATCTTGGACTT-GACGTTGTCAATGGTGTCAGAGGACTCCAC 1245032
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCA 41861
||| | || || || || || || || ||||| || || || ||||
Sbjct 1245031 CTCGAGGGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 1244985
>seq5
Length=4047401
Score = 113 bits (124), Expect = 4e-20
Identities = 106/135 (79%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | || ||||| || ||| ||||||||||||||| ||||| ||
Sbjct 2184061 CCACCTCGGAGTCGGAGAACGAGATGGAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAC 2184002
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| || | || ||||||||||| |||||||| ||||| ||||| ||||||| |||
Sbjct 2184001 AGGGTTCGGCCATCCTCGAGCTGCTTACCGGCGAAAATCAGTCGCTGCTGGTCCGGAGGA 2183942
Query 41756 ACGCTCTCCTTGTCC 41770
| | ||||||||||
Sbjct 2183941 ATTCCCTCCTTGTCC 2183927
Score = 105 bits (116), Expect = 6e-18
Identities = 105/136 (77%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || || || | || ||||| || ||| ||||||||| ||||| ||||||||
Sbjct 2184464 GCCACCTCGGAGTCGAAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGA 2184405
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| || || | || ||||||||||| || || || ||||| ||||| ||||||| |||
Sbjct 2184404 AAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCAAAAATCAGTCGCTGCTGGTCCGGGGG 2184345
Query 41755 AACGCTCTCCTTGTCC 41770
|| | ||||||||||
Sbjct 2184344 AATTCCCTCCTTGTCC 2184329
Score = 93.3 bits (102), Expect = 4e-14
Identities = 118/157 (75%), Gaps = 4/157 (3%)
Strand=Plus/Minus
Query 41708 TCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTG 41767
|| ||||||||||| || || || ||||| ||||| ||||||| ||||| | |||||||
Sbjct 2184217 TCCTCGAGCTGCTTACCAGCAAAAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTG 2184158
Query 41768 TCCATGATTTTTTG-CTTCA-ACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTA 41825
||| ||| | || | ||| | | | | | |||||| ||||| ||||| | || |
Sbjct 2184157 TCC-TGAATCTTGGACTTGACATTATCA-ATAGTGTCAGAAGACTCAACCTCGAGAGTGA 2184100
Query 41826 TCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
| || || || ||||| ||||| ||||||||||||||
Sbjct 2184099 TGGTCTTTCCAGTCAGAGTCTTGACGAAAATCTGCAT 2184063
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462303832414800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |