Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12] 7 sequences; 20,547,992 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2 150 2e-31 seq6 141 1e-28 seq4 87.8 2e-12 >seq2 Length=3044971 Score = 150 bits (166), Expect = 2e-31 Identities = 381/574 (66%), Gaps = 8/574 (1%) Strand=Plus/Plus Query 24149 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 24208 ||| ||||||||||||| || | |||||||| || ||||| || ||||| || || Sbjct 506405 GTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCAGGCATGAGACC 506464 Query 24209 ACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 24268 ||||| || ||||| || ||||| || || || || || ||||| || || || || || Sbjct 506465 TCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCGGAGAAGAAGATGCCCTCGACGGC 506524 Query 24269 CGCAAAGGCAATAAGTCTTTCTCCATAACCGG-CGCT--GTCATGTATCCACTTTTGAGC 24325 ||||||||||| |||| |||||| | || | || ||| |||||||| | || Sbjct 506525 GGCAAAGGCAATGAGTCGCTCTCCAAAGGTGGACTCTTCGTCGGAGATCCACTTGAGGGC 506584 Query 24326 CCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttttt 24385 ||| |||||||| || || | || || || ||||| || || || || || ||| || Sbjct 506585 CCAGTCGGCCTTTTTCTTGATGCAGGGGATGGTCTCGATGGCGTTGAACAGGTAGGTTCG 506644 Query 24386 ttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTT 24445 || || || || | ||||| || |||| || || | || || || ||||| Sbjct 506645 CTCTTTGGGGTCCTTGATGTATGTGTCGATCAGCAGCGAGTAGGTCTCGGAGTGGATGTT 506704 Query 24446 TTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACA 24505 || || || || || |||||||| || | ||||||| ||| || || | Sbjct 506705 CTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCCTCGGGGGCCTGCACCTCGCCGGA 506764 Query 24506 AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 24565 ||||| || | | || || || || || ||||| ||| ||||| || || | || Sbjct 506765 GAATCGCTCAACCAGGTTCTCGTTAACGATACCGTCGGAGGCAGCAAAGAATGCGAGAAC 506824 Query 24566 ATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGT---TTATTCCAATCATTGATATCTT 24621 || || || | || || | |||| ||| || | ||| ||| || || | Sbjct 506825 GTGGGAGATGAAGAACCGCTCATC-GTTGTTGAGTCTGTTCTCCCAGTCACCCATGTCCT 506883 Query 24622 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 24681 | | ||| | || || ||||||| || || ||||| ||||| || ||||| | || Sbjct 506884 TTCCAAGATCAATCTCCTCAGCTGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATCTGCC 506943 Query 24682 AGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 |||| || || || || || || || | ||||| Sbjct 506944 AGATTTCGTGGTACTGGATGGGGAAGAGCACAAA 506977 >seq6 Length=4002965 Score = 141 bits (156), Expect = 1e-28 Identities = 453/700 (65%), Gaps = 2/700 (0%) Strand=Plus/Minus Query 53953 AAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCA 54012 |||||| || || | || | ||| | || || || || | || ||||||| | ||| Sbjct 3934138 AAACTCATCACCATAGACGTCGTCAAGACCGGGGCACTCGTTGGGGCACATCAGGGTCCA 3934079 Query 54013 CTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAG 54072 || ||| | || ||||| | ||| || || || || ||||| ||||| | || || Sbjct 3934078 TTCAGCGTTCTGCTCGACTCGCTCCATGAACAGGTCGGGGATCCACAGAGCCAGGAACAG 3934019 Query 54073 ATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAAT 54132 |||| || || | || || ||||| |||||| || ||| |||| | | || Sbjct 3934018 GTCTCGGGCTCGAATCTCTTCCTTTCCGTGGTTCTTTCGCAGCTCGCAGAACTCGAAGAT 3933959 Query 54133 ATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTG 54192 ||| ||||| || || | ||| || | | | ||||| || ||||| |||||||| Sbjct 3933958 ATCGTCGTGCCAGGGCTCAAGGTACATTGCAAAGGCACCAGGTCGCTTGTTGCCTCCCTG 3933899 Query 54193 ATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGC 54252 ||| | ||||| |||||||| ||||| || | || ||| || | ||||| ||||| | Sbjct 3933898 ATCAACGTATCGGGCGGTGTTGTTATAGACACGCAGCATGGGCACGATACCGTTGGAGGT 3933839 Query 54253 ACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTAT 54312 || || || || | || ||| ||| | || || || || || || ||||| || Sbjct 3933838 TCCGTTAGTTCCAGCAATGTAGGAGCCAGTAGCTCGGATGTTGTGGATAGACAGACCGAT 3933779 Query 54313 CCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTAT 54372 || || || || || || | || || ||| | ||||| |||||||| || || Sbjct 3933778 ACCGCCGGCAGACTTGGAAATCAGAGCACAGGTTTTGAGGGTATCGTAGATGCCGTCGAT 3933719 Query 54373 ACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGC 54432 || ||| ||||||| | || ||||| ||||| || | | |||||| || Sbjct 3933718 GGAGTCGTCCTTCATGTTGACAAGGAAACACGACGACATCTGAGGCTGGGGAGTTCCGGC 3933659 Query 54433 ATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCT 54491 || | | || || |||||||| || || | || | ||| | ||| ||||| |||| Sbjct 3933658 GTTGTAGAGAGTGGGGGAAGCGTGAGTGAAGTACTTCTGAGACATATAG-TTGTAGGTCT 3933600 Query 54492 CGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCT 54551 | || || | | || | || || || || | ||| ||||| | ||| || | Sbjct 3933599 CAATGGCCCGGGCAATGTTGTCGCCGTGGATACCGACAGAGACTCGCATGATCATCTGTT 3933540 Query 54552 GAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAA 54611 | |||| || | | ||| | | ||||| ||| | | |||| || || | Sbjct 3933539 GGGGTCGCTCGGCAACAGCACCGTTGACTCGCAGCAGGTATGCTCGCTCCAGGGTCTTGA 3933480 Query 54612 AACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 | ||||| |||||||| | |||||||| ||||| | ||| Sbjct 3933479 AGCCAAAGTAGTTGTAGGTGAAGTCTCGGTCGTAGAGAAT 3933440 >seq4 Length=3629463 Score = 87.8 bits (96), Expect = 2e-12 Identities = 458/713 (64%), Gaps = 30/713 (4%) Strand=Plus/Plus Query 53948 CGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGA-CATTCATCCGGACACATCAA 54006 || || || || ||||||||||||| | ||| || || | || | ||||| | | Sbjct 425066 CGGTCGAATTCCTCTCCCCAAACATCGGCCAGACCTGGGGCCTTTCTG-GGACAGAAAAG 425124 Query 54007 CGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 54066 ||||||| | || ||| || ||| |||||| || ||||| | ||| | || Sbjct 425125 AGACCACTTTTCGCCATTCTCGACTTTGCGCATAAACAGGTCAGGCACCCATAAGGCGTA 425184 Query 54067 AAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTA---AGATCGAGGAA 54123 || || || | || || || ||||||| || || ||||| |||| ||||| Sbjct 425185 GAAGAGGTCACGGGCTCGATTTTCCTCGGCACC---ATGGTTTTTGCGCAGATTCAGGAA 425241 Query 54124 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTT 54183 ||| ||| || | |||||| || ||||| || | | | |||| || |||||||| Sbjct 425242 ATCCAAAATGTCTGCATGCCAGGGCTCCAAATACACTGCAAACGCTCCTGGACGTTTGTT 425301 Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 |||||| || || | ||| | ||| ||||| || | ||||| | ||| |||| || || Sbjct 425302 TCCTCCTTGGTCCACGTACCGAGCAGTGTTGTTGAACACTCTGAGCATAGGAACGATTCC 425361 Query 54244 ATTGGATGCACCATTGGTCCCGGAGAT-ATAGCTTCCACTGGCACGAATATTACTAAT-T 54301 |||| || | | ||| | || | ||| ||| |||| | ||| || || | Sbjct 425362 GGAGGATCTTCCTTGAGACCCAGTAATGAGAGC-TCCCTTGGCTCTAATGTTGTGGATAT 425420 Query 54302 GATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT-AACGTATCATA 54360 | || || || || || || |||| |||||| || || |||||| | ||| || || Sbjct 425421 GCAAG-CCGATACCTCCGGCGGTTTTGGAGATTTGGGCACA-CGTTTTGAGCGTGTCGTA 425478 Query 54361 GATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 54420 |||||| || || || | |||| | || |||||| || | |||| | Sbjct 425479 GATGCCGTCGATGGAGTCTGCTGCCATGGCCACCAGGAAACAGGACGAAAGTTGGCCCTG 425538 Query 54421 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG-TA 54479 ||||| ||||| || || |||||||| || || || || ||||| || | | Sbjct 425539 GGGGGTTCCTGCATTGAACAAAGTAGGAGACGCATGTGTGAA----TTTTCTGAGCGACA 425594 Query 54480 GA---TTGTACGTCTCGATAGC--TGAGTCTAT-ATC-CCATTGATGAATTCCTACTGCG 54532 || | ||| || ||| | ||| ||| ||| |||| |||| || | || Sbjct 425595 GAGCCTGGTAGGTTTCGCGCACCTTGAAAATATCATCTCCATGGATG----CCCAGGGCC 425650 Query 54533 ACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAG 54592 || ||||| ||||| || ||||||| || || | || | | | ||| ||||| Sbjct 425651 ACTCGCATCAACATATGTTGAGGTCGCTCCACCACGTTTCCGCCAACTCTCAATAAGTAT 425710 Query 54593 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 54645 || || |||| || || || ||||| ||| ||| | | |||||| | ||| Sbjct 425711 GACTTCTCCAGGGTCTTGAATCCAAAGTAGGAGTAAGTCATGTCTCGGTAGTA 425763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721548049360