Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12] 7 sequences; 20,547,992 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2 417 8e-112 seq6 141 1e-28 seq5 82.4 8e-11 >seq2 Length=3044971 Score = 417 bits (462), Expect = 8e-112 Identities = 615/861 (71%), Gaps = 11/861 (1%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| ||||| ||||||| || ||||| ||| | |||||||| || |||| || Sbjct 507007 GAGCCTCTGCTCAAGGAGAACCATCGACGGTTTGTGCTCTTCCCCATCCAGTACCACGAA 506948 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||| | |||||| | || || Sbjct 506947 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACAGCTGAGGAGATTGATCTT 506888 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||||| | | ||||||||| | | ||| || | ||||| |||||| Sbjct 506887 GGAAAGGACATGGGTGACTGGGAGAACAGACTCAACAACGATGAGCGGTTCTTCATCTCC 506828 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| || || || || || ||| |||||| ||||| |||||||| ||||| ||||| Sbjct 506827 CACGTTCTCGCATTCTTTGCTGCCTCCGACGGTATCGTTAACGAGAACCTGGTTGAGCGA 506768 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| | |||||||||| ||||||| ||||||||||||||| |||||| ||| Sbjct 506767 TTCTCCGGCGAGGTGCAGGCCCCCGAGGCCAAGTGCTTCTACGGCTTCCAGATCATGATG 506708 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGC-GCTCTTCGGA 116931 |||||| | ||||| || | || ||| || |||||||| ||| | | | | | Sbjct 506707 GAGAACATCCACTCCGAGACCTACTCGCTGCTGATCGACACATACATCAAGGACCCCAAA 506648 Query 116932 G-GAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCG 116990 | | ||| || | | ||| |||||||||||||| || || ||| |||| | ||||||| Sbjct 506647 GAGCGAACCTACCT--GTTCAACGCCATCGAGACCATCCCCTGCATCAAGAAAAAGGCCG 506590 Query 116991 AGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCT 117050 | ||||| || |||||| ||| | |||| || |||| || ||||| || | |||| Sbjct 506589 ACTGGGCCCTCAAGTGGATCTCCGACGAAGAGTCCACCTTTGGAGAGCGACTCATTGCCT 506530 Query 117051 TCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGA 117110 | || |||||||||||| ||||||| || ||| ||||||| |||| || |||||||||| Sbjct 506529 TTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCTTTCGCCTCCATCTTCTGGCTCAAGA 506470 Query 117111 AACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTC 117170 | || || |||||||| ||||| || ||| |||||||||||||||| | |||||||||| Sbjct 506469 AGCGAGGTCTCATGCCTGGCCTCACCTTCTCCAACGAGCTCATCTCCCGAGACGAGGGTC 506410 Query 117171 TGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGC 117230 |||| ||||||||||| |||| ||| ||| | | | | ||||| | | Sbjct 506409 TGCACACTGACTTTGCCTGCCTGCTTTTCTCGCACCTTGAGAACCGACCCTCAAAGAAGA 506350 Query 117231 GCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGC 117290 || ||| || | ||| || || | |||||||||| ||||| || || || | Sbjct 506349 TTGTTGAGGACGTCATTGTCGAGGCTGTTGGCATCGAGCAGGAGTTCCTTACTGACGCTC 506290 Query 117291 TG-CCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTCGT 117348 || || ||| ||||||| || | || || || | ||||| || ||||||||||| || Sbjct 506289 TGCCCTGTG-GTCTGCTTGGTATGAA-CGCCAAGCTGATGTGCCAGTACATCGAGTTTGT 506232 Query 117349 CGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCT 117408 ||| ||| | ||||| | | || | | ||||| || ||| | ||||||| | Sbjct 506231 CGCTGACCGTCTGCTAGTTGCTCTCGGTAACTCCAAGGTGTATAACTCCACCAACCCCTT 506172 Query 117409 GGACTTTATGAACCTCATCTC 117429 ||||| ||| | |||||| Sbjct 506171 CGACTTCATGGAGAACATCTC 506151 >seq6 Length=4002965 Score = 141 bits (156), Expect = 1e-28 Identities = 162/215 (75%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 40691 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCG 40750 ||||||| || || || || || || ||||| || |||||| |||| || || || | | Sbjct 1219021 TGCAAATCTTTGTCAAGACCCTTACTGGCAAGACTATCACCCTCGAGGTGGAGTCCTCTG 1219080 Query 40751 ACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||| | | | |||| ||||| || || | ||||| ||||| |||||| |||||||| Sbjct 1219081 ACACCATTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCGGACCAG 1219139 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||||| |||| ||| || || ||||| || |||| || || || |||||||||| Sbjct 1219140 CAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACTCTTTCCGACTACAAC 1219199 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| |||| || ||||| || |||| Sbjct 1219200 ATCCAGAAGGAGTCCACTCTCCATCTCGTTCTGCG 1219234 Score = 134 bits (148), Expect = 1e-26 Identities = 162/218 (74%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 40688 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA 40747 ||||||| || || || || || || || || || || |||||| |||| || || | Sbjct 1337352 AAATGCAGATTTTTGTCAAGACCCTTACCGGTAAGACTATCACCCTCGAGGTGGAGTCTT 1337411 Query 40748 CCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||||| | | | |||| ||||| || || | ||||| ||||| || ||| ||||| Sbjct 1337412 CCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGAC 1337470 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| ||||| |||| ||| || || ||||| || |||| || ||||| |||||| Sbjct 1337471 CAGCAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACCCTTTCTGACTAC 1337530 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||||| |||| || ||||| || |||| Sbjct 1337531 AACATCCAGAAGGAGTCCACTCTCCATCTCGTCCTGCG 1337568 >seq5 Length=4198534 Score = 82.4 bits (90), Expect = 8e-11 Identities = 142/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAA-ACCATCACCGTCGACGTCGAAGCCAC 40748 ||||| || ||||| || || || || || ||| |||||| | |||| || || | | Sbjct 2277209 ATGCAGATTTTCGTCAAGACTCTGACTGGAAAAGACCATC--CTTCGAGGTTGAGTCTTC 2277266 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||||| | | | | | ||| || |||| ||||| ||||| || ||| ||||||| Sbjct 2277267 CGACACCATCGACAAT-TAAAGTCCAAGATTCAGGACAAGGAGGGAATTCCCCCGGACCA 2277325 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTG-GACGACGAGCGCACC-CTCAACGACTAC 40866 ||| ||||| || | ||| || || ||||| || || | || || || ||||||| Sbjct 2277326 GCAGCGACTGATTTTCGCTGGTAAGCAGCTCCGAGGATGGTCGAACTTCTTTCCGACTAC 2277385 Query 40867 AACATCCAGAAGGAGGCCAC 40886 ||||| ||||||||| |||| Sbjct 2277386 AACATTCAGAAGGAGTCCAC 2277405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219154918320