Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12]
7 sequences; 20,547,992 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq2 417 8e-112
seq6 141 1e-28
seq5 82.4 8e-11
>seq2
Length=3044971
Score = 417 bits (462), Expect = 8e-112
Identities = 615/861 (71%), Gaps = 11/861 (1%)
Strand=Plus/Minus
Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635
||||| ||||| ||||||| || ||||| ||| | |||||||| || |||| ||
Sbjct 507007 GAGCCTCTGCTCAAGGAGAACCATCGACGGTTTGTGCTCTTCCCCATCCAGTACCACGAA 506948
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||||||||| || |||||||| | |||||| | || ||
Sbjct 506947 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACAGCTGAGGAGATTGATCTT 506888
Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAAG 116752
||||||| | | ||||||||| | | ||| || | ||||| ||||||
Sbjct 506887 GGAAAGGACATGGGTGACTGGGAGAACAGACTCAACAACGATGAGCGGTTCTTCATCTCC 506828
Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812
||||| || || || || || ||| |||||| ||||| |||||||| ||||| |||||
Sbjct 506827 CACGTTCTCGCATTCTTTGCTGCCTCCGACGGTATCGTTAACGAGAACCTGGTTGAGCGA 506768
Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872
||| | |||||||||| ||||||| ||||||||||||||| |||||| |||
Sbjct 506767 TTCTCCGGCGAGGTGCAGGCCCCCGAGGCCAAGTGCTTCTACGGCTTCCAGATCATGATG 506708
Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGC-GCTCTTCGGA 116931
|||||| | ||||| || | || ||| || |||||||| ||| | | | | |
Sbjct 506707 GAGAACATCCACTCCGAGACCTACTCGCTGCTGATCGACACATACATCAAGGACCCCAAA 506648
Query 116932 G-GAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCG 116990
| | ||| || | | ||| |||||||||||||| || || ||| |||| | |||||||
Sbjct 506647 GAGCGAACCTACCT--GTTCAACGCCATCGAGACCATCCCCTGCATCAAGAAAAAGGCCG 506590
Query 116991 AGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCT 117050
| ||||| || |||||| ||| | |||| || |||| || ||||| || | ||||
Sbjct 506589 ACTGGGCCCTCAAGTGGATCTCCGACGAAGAGTCCACCTTTGGAGAGCGACTCATTGCCT 506530
Query 117051 TCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGA 117110
| || |||||||||||| ||||||| || ||| ||||||| |||| || ||||||||||
Sbjct 506529 TTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCTTTCGCCTCCATCTTCTGGCTCAAGA 506470
Query 117111 AACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTC 117170
| || || |||||||| ||||| || ||| |||||||||||||||| | ||||||||||
Sbjct 506469 AGCGAGGTCTCATGCCTGGCCTCACCTTCTCCAACGAGCTCATCTCCCGAGACGAGGGTC 506410
Query 117171 TGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGC 117230
|||| ||||||||||| |||| ||| ||| | | | | ||||| | |
Sbjct 506409 TGCACACTGACTTTGCCTGCCTGCTTTTCTCGCACCTTGAGAACCGACCCTCAAAGAAGA 506350
Query 117231 GCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGC 117290
|| ||| || | ||| || || | |||||||||| ||||| || || || |
Sbjct 506349 TTGTTGAGGACGTCATTGTCGAGGCTGTTGGCATCGAGCAGGAGTTCCTTACTGACGCTC 506290
Query 117291 TG-CCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTCGT 117348
|| || ||| ||||||| || | || || || | ||||| || ||||||||||| ||
Sbjct 506289 TGCCCTGTG-GTCTGCTTGGTATGAA-CGCCAAGCTGATGTGCCAGTACATCGAGTTTGT 506232
Query 117349 CGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCT 117408
||| ||| | ||||| | | || | | ||||| || ||| | ||||||| |
Sbjct 506231 CGCTGACCGTCTGCTAGTTGCTCTCGGTAACTCCAAGGTGTATAACTCCACCAACCCCTT 506172
Query 117409 GGACTTTATGAACCTCATCTC 117429
||||| ||| | ||||||
Sbjct 506171 CGACTTCATGGAGAACATCTC 506151
>seq6
Length=4002965
Score = 141 bits (156), Expect = 1e-28
Identities = 162/215 (75%), Gaps = 2/215 (1%)
Strand=Plus/Plus
Query 40691 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCG 40750
||||||| || || || || || || ||||| || |||||| |||| || || || | |
Sbjct 1219021 TGCAAATCTTTGTCAAGACCCTTACTGGCAAGACTATCACCCTCGAGGTGGAGTCCTCTG 1219080
Query 40751 ACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
||| | | | |||| ||||| || || | ||||| ||||| |||||| ||||||||
Sbjct 1219081 ACACCATTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCGGACCAG 1219139
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| ||||| |||| ||| || || ||||| || |||| || || || ||||||||||
Sbjct 1219140 CAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACTCTTTCCGACTACAAC 1219199
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
|||||||||||| |||| || ||||| || ||||
Sbjct 1219200 ATCCAGAAGGAGTCCACTCTCCATCTCGTTCTGCG 1219234
Score = 134 bits (148), Expect = 1e-26
Identities = 162/218 (74%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 40688 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA 40747
||||||| || || || || || || || || || || |||||| |||| || || |
Sbjct 1337352 AAATGCAGATTTTTGTCAAGACCCTTACCGGTAAGACTATCACCCTCGAGGTGGAGTCTT 1337411
Query 40748 CCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
|||||| | | | |||| ||||| || || | ||||| ||||| || ||| |||||
Sbjct 1337412 CCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGAC 1337470
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
||||| ||||| |||| ||| || || ||||| || |||| || ||||| ||||||
Sbjct 1337471 CAGCAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACCCTTTCTGACTAC 1337530
Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
||||||||||||||| |||| || ||||| || ||||
Sbjct 1337531 AACATCCAGAAGGAGTCCACTCTCCATCTCGTCCTGCG 1337568
>seq5
Length=4198534
Score = 82.4 bits (90), Expect = 8e-11
Identities = 142/200 (71%), Gaps = 6/200 (3%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAA-ACCATCACCGTCGACGTCGAAGCCAC 40748
||||| || ||||| || || || || || ||| |||||| | |||| || || | |
Sbjct 2277209 ATGCAGATTTTCGTCAAGACTCTGACTGGAAAAGACCATC--CTTCGAGGTTGAGTCTTC 2277266
Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
||||| | | | | | ||| || |||| ||||| ||||| || ||| |||||||
Sbjct 2277267 CGACACCATCGACAAT-TAAAGTCCAAGATTCAGGACAAGGAGGGAATTCCCCCGGACCA 2277325
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTG-GACGACGAGCGCACC-CTCAACGACTAC 40866
||| ||||| || | ||| || || ||||| || || | || || || |||||||
Sbjct 2277326 GCAGCGACTGATTTTCGCTGGTAAGCAGCTCCGAGGATGGTCGAACTTCTTTCCGACTAC 2277385
Query 40867 AACATCCAGAAGGAGGCCAC 40886
||||| ||||||||| ||||
Sbjct 2277386 AACATTCAGAAGGAGTCCAC 2277405
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515219154918320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |