Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12] 7 sequences; 20,547,992 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq6 107 2e-18 seq5 96.9 3e-15 seq2 91.5 1e-13 seq4 84.2 2e-11 >seq6 Length=4002965 Score = 107 bits (118), Expect = 2e-18 Identities = 166/236 (70%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| || | || || || | |||| || ||||| || || |||||||| ||| Sbjct 1219248 TACCTCCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGG 1219189 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || ||||||||||| || || ||| |||| || |||||||| || || | Sbjct 1219188 AAAGAGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGG 1219129 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || ||||||||||| || || || || | || | |||||| | | ||| | Sbjct 1219128 GGATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCCA 1219069 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCA-TGGCTTA 118744 |||||| ||| | || ||||| || || || || ||||| || |||| ||| ||| Sbjct 1219068 CCTCGAGGGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCACTGGGTTA 1219013 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || ||||| || || |||||||| || | || || ||||||||||| Sbjct 1337556 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCGGCCGTCCTCGAGCTGC 1337497 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || || ||| |||| || |||||||| || || || || ||||||||||| || || Sbjct 1337496 TTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTG 1337437 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 || || | |||| |||||| | ||| ||||||| ||| | || || ||||| Sbjct 1337436 GACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTACCGGTA 1337377 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 || || || |||||||||||||| Sbjct 1337376 AGGGTCTTGACAAAAATCTGCAT 1337354 >seq5 Length=4198534 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/200 (73%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATA-GTGCGCGTATCCTCG-AGCTGTTTTC 118599 || ||||| || ||||||||||| ||| | | || || ||||||| ||||| || | Sbjct 2277405 GTGGACTCCTTCTGAATGTTGTAGTCGGAAAGAAGTTCGACCATCCTCGGAGCTGCTTAC 2277346 Query 118600 CAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTT 118659 ||||| | || || |||||||| || || || || ||||||||||| ||| || | Sbjct 2277345 CAGCGAAAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGAATCTTGGACT 2277286 Query 118660 TAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT-TTTGCCGGTCAGA 118718 | | || |||| |||||| | ||| ||||||| || | || ||| || |||||| Sbjct 2277285 TTAATTG-TCGATGGTGTCGGAAGACTCAACCTCGAAGG--ATGGTCTTTTCCAGTCAGA 2277229 Query 118719 GTTTTTACAAAAATCTGCAT 118738 || || || ||||||||||| Sbjct 2277228 GTCTTGACGAAAATCTGCAT 2277209 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/204 (71%), Gaps = 4/204 (2%) Strand=Plus/Minus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATC-GCTCATAGTGCGCGTATCCTCGAGCTG 118594 |||| || ||||||| | ||||||| || || | | ||| | |||||||||||| Sbjct 2276748 TGGAGAGTGGACTCTTCT-GAATGTTTTAGTCCGGAAAGAGTTGGACCATCCTCGAGCTG 2276690 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || |||||| | || || |||||||| || || || || |||||||||| ||| || Sbjct 2276689 CTTACCAGCGAAAATCAGTCGCTGCTGGTCCGGGGGAAT--CCTCCTTGTCCTGAATCTT 2276632 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || | | |||| |||||| | ||| ||||||| || | || || || || Sbjct 2276631 GACTTGACAATTGTCGATGGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTTTCCAGT 2276572 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 |||||| || || ||||||||||| Sbjct 2276571 CAGAGTCTTGACGAAAATCTGCAT 2276548 >seq2 Length=3044971 Score = 91.5 bits (100), Expect = 1e-13 Identities = 347/534 (65%), Gaps = 23/534 (4%) Strand=Plus/Minus Query 44778 TCGAGAATATGCCCTGCGTGCGCAGAAAGGCCGAATGGGCGATGAAGTATATTGACGATG 44837 |||||| || |||||| | | ||||||||| ||||| | |||| || ||| | Sbjct 506622 TCGAGACCATCCCCTGCATCAAGAAAAAGGCCGACTGGGCCCTCAAGTGGATCTCCGACG 506563 Query 44838 AAAAGATAACTTTGGCCGAACGATTGGTCGCATTCGCCATTGTCGAAGGAGTGTTCTTTT 44897 || || || || | || ||| | | || || ||| ||||| || | ||||| | Sbjct 506562 AAGAGTCCACCTTTGGAGAGCGACTCATTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCT 506503 Query 44898 CGGGGAGTTTTGCGGCGATATTTTACATGAA-AACCAAGGGAGTGATGCCCGGACTGACG 44956 | || ||| || | || || | | || || | ||| | ||||| || || || Sbjct 506502 CCGGCTCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTC-TCATGCCTGGCCTCACC 506444 Query 44957 TTTAGCAACGAATTGATTTCGAGAGACGAAGGTCTGCACACCAACTTTGCCTGCCT-CTA 45015 || |||||| | || || ||||||| ||||||||||| ||||||||||||| || Sbjct 506443 TTCTCCAACGAGCTCATCTCCCGAGACGAGGGTCTGCACACTGACTTTGCCTGCCTGCTT 506384 Query 45016 CTATAATAC---GAGAGTCGA---TCAAAAGTTGGACGCGCCCACCGTCAACGACATGTT 45069 | | || |||| ||| ||||| || | | || | ||| | | Sbjct 506383 TTCTCGCACCTTGAGAACCGACCCTCAAA-----GAAG-----ATTGTTGAGGACGTCAT 506334 Query 45070 CTCCGAAGCCGTGGCCATCGAGATGGAATTTTTTGCTGAGGCTCTGCCCGAATCGT-TGG 45128 ||| || || | ||||||| ||| || || |||| ||||||||| | || || Sbjct 506333 TGTCGAGGCTGTTGGCATCGAGCAGGAGTTCCTTACTGACGCTCTGCCCTG-TGGTCTGC 506275 Query 45129 TGGGAATGAACGCGAATATGATGAGAAAGTACATTGAGTTTGTCGCCGATCGTCTTCTCG 45188 | || |||||||| || ||||| | ||||||| ||||||||||| || ||||| || | Sbjct 506274 TTGGTATGAACGCCAAGCTGATGTGCCAGTACATCGAGTTTGTCGCTGACCGTCTGCTAG 506215 Query 45189 TCCAGTTAAAGTATC-CCAAGATGTACTATACTGAGAACCCATTCGAGTTTATGAACAAT 45247 | | ||| | ||||| |||| | | ||||| ||||| || ||| | || Sbjct 506214 T-TGCTCTCGGTAACTCCAAGGTGTATAACTCCACCAACCCCTTCGACTTCATGGAGAAC 506156 Query 45248 ATTTCGTTGGAGGGCAAAACTAAtttttttGAGAAACGCGTCGGCGAATACAAG 45301 || || ||| ||||| || || ||||| ||||| || || ||| ||| || Sbjct 506155 ATCTCTCTGGCCGGCAAGACCAACTTTTTCGAGAAGCGAGTGTCCGACTACCAG 506102 >seq4 Length=3629463 Score = 84.2 bits (92), Expect = 2e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 133188 ATGTCGAGATCGATTAGCGCTTTGACGAGATACTGGTTGACCACTTGAAACTCGCCGGCG 133247 ||| | || | |||||| |||| | || ||||||| ||||| ||||||| || || Sbjct 424214 ATGCCCAGTTTGATTAGATCTTTCATCAGCCACTGGTTCACCACGAGAAACTCACCAGCC 424273 Query 133248 AGAACGCGTCTGAGATATACATTCGACGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGT 133307 | || || | || || | || |||||| ||||||||||| | ||||||| ||| || Sbjct 424274 TGGACCCGACGAAGGTAAATGTTGGACGTGTACGGTTCGAAACACTCGTTGTGGCCCAGA 424333 Query 133308 ATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCACCAACAAAGAGTTTC 133356 ||||||| || | || || |||||| || || | | |||||||| Sbjct 424334 ATCTGCGATGTGGAAGCTGTAGGCATGGGGGCAACAAGTAGAGAGTTTC 424382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830362988844