Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12]
7 sequences; 20,547,992 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq6 107 2e-18
seq5 96.9 3e-15
seq2 91.5 1e-13
seq4 84.2 2e-11
>seq6
Length=4002965
Score = 107 bits (118), Expect = 2e-18
Identities = 166/236 (70%), Gaps = 1/236 (0%)
Strand=Plus/Minus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
||||||| || | || || || | |||| || ||||| || || |||||||| |||
Sbjct 1219248 TACCTCCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGG 1219189
Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
| ||| || ||||||||||| || || ||| |||| || |||||||| || || |
Sbjct 1219188 AAAGAGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGG 1219129
Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689
| || ||||||||||| || || || || | || | |||||| | | ||| |
Sbjct 1219128 GGATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCCA 1219069
Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCA-TGGCTTA 118744
|||||| ||| | || ||||| || || || || ||||| || |||| ||| |||
Sbjct 1219068 CCTCGAGGGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCACTGGGTTA 1219013
Score = 100 bits (110), Expect = 2e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595
|||| || ||||| || || |||||||| || | || || |||||||||||
Sbjct 1337556 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCGGCCGTCCTCGAGCTGC 1337497
Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655
|| || ||| |||| || |||||||| || || || || ||||||||||| || ||
Sbjct 1337496 TTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTG 1337437
Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715
|| || | |||| |||||| | ||| ||||||| ||| | || || |||||
Sbjct 1337436 GACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTACCGGTA 1337377
Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738
|| || || ||||||||||||||
Sbjct 1337376 AGGGTCTTGACAAAAATCTGCAT 1337354
>seq5
Length=4198534
Score = 96.9 bits (106), Expect = 3e-15
Identities = 145/200 (73%), Gaps = 6/200 (3%)
Strand=Plus/Minus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATA-GTGCGCGTATCCTCG-AGCTGTTTTC 118599
|| ||||| || ||||||||||| ||| | | || || ||||||| ||||| || |
Sbjct 2277405 GTGGACTCCTTCTGAATGTTGTAGTCGGAAAGAAGTTCGACCATCCTCGGAGCTGCTTAC 2277346
Query 118600 CAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTT 118659
||||| | || || |||||||| || || || || ||||||||||| ||| || |
Sbjct 2277345 CAGCGAAAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGAATCTTGGACT 2277286
Query 118660 TAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT-TTTGCCGGTCAGA 118718
| | || |||| |||||| | ||| ||||||| || | || ||| || ||||||
Sbjct 2277285 TTAATTG-TCGATGGTGTCGGAAGACTCAACCTCGAAGG--ATGGTCTTTTCCAGTCAGA 2277229
Query 118719 GTTTTTACAAAAATCTGCAT 118738
|| || || |||||||||||
Sbjct 2277228 GTCTTGACGAAAATCTGCAT 2277209
Score = 87.8 bits (96), Expect = 2e-12
Identities = 144/204 (71%), Gaps = 4/204 (2%)
Strand=Plus/Minus
Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATC-GCTCATAGTGCGCGTATCCTCGAGCTG 118594
|||| || ||||||| | ||||||| || || | | ||| | ||||||||||||
Sbjct 2276748 TGGAGAGTGGACTCTTCT-GAATGTTTTAGTCCGGAAAGAGTTGGACCATCCTCGAGCTG 2276690
Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654
|| |||||| | || || |||||||| || || || || |||||||||| ||| ||
Sbjct 2276689 CTTACCAGCGAAAATCAGTCGCTGCTGGTCCGGGGGAAT--CCTCCTTGTCCTGAATCTT 2276632
Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714
|| | | |||| |||||| | ||| ||||||| || | || || || ||
Sbjct 2276631 GACTTGACAATTGTCGATGGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTTTCCAGT 2276572
Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738
|||||| || || |||||||||||
Sbjct 2276571 CAGAGTCTTGACGAAAATCTGCAT 2276548
>seq2
Length=3044971
Score = 91.5 bits (100), Expect = 1e-13
Identities = 347/534 (65%), Gaps = 23/534 (4%)
Strand=Plus/Minus
Query 44778 TCGAGAATATGCCCTGCGTGCGCAGAAAGGCCGAATGGGCGATGAAGTATATTGACGATG 44837
|||||| || |||||| | | ||||||||| ||||| | |||| || ||| |
Sbjct 506622 TCGAGACCATCCCCTGCATCAAGAAAAAGGCCGACTGGGCCCTCAAGTGGATCTCCGACG 506563
Query 44838 AAAAGATAACTTTGGCCGAACGATTGGTCGCATTCGCCATTGTCGAAGGAGTGTTCTTTT 44897
|| || || || | || ||| | | || || ||| ||||| || | ||||| |
Sbjct 506562 AAGAGTCCACCTTTGGAGAGCGACTCATTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCT 506503
Query 44898 CGGGGAGTTTTGCGGCGATATTTTACATGAA-AACCAAGGGAGTGATGCCCGGACTGACG 44956
| || ||| || | || || | | || || | ||| | ||||| || || ||
Sbjct 506502 CCGGCTCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTC-TCATGCCTGGCCTCACC 506444
Query 44957 TTTAGCAACGAATTGATTTCGAGAGACGAAGGTCTGCACACCAACTTTGCCTGCCT-CTA 45015
|| |||||| | || || ||||||| ||||||||||| ||||||||||||| ||
Sbjct 506443 TTCTCCAACGAGCTCATCTCCCGAGACGAGGGTCTGCACACTGACTTTGCCTGCCTGCTT 506384
Query 45016 CTATAATAC---GAGAGTCGA---TCAAAAGTTGGACGCGCCCACCGTCAACGACATGTT 45069
| | || |||| ||| ||||| || | | || | ||| | |
Sbjct 506383 TTCTCGCACCTTGAGAACCGACCCTCAAA-----GAAG-----ATTGTTGAGGACGTCAT 506334
Query 45070 CTCCGAAGCCGTGGCCATCGAGATGGAATTTTTTGCTGAGGCTCTGCCCGAATCGT-TGG 45128
||| || || | ||||||| ||| || || |||| ||||||||| | || ||
Sbjct 506333 TGTCGAGGCTGTTGGCATCGAGCAGGAGTTCCTTACTGACGCTCTGCCCTG-TGGTCTGC 506275
Query 45129 TGGGAATGAACGCGAATATGATGAGAAAGTACATTGAGTTTGTCGCCGATCGTCTTCTCG 45188
| || |||||||| || ||||| | ||||||| ||||||||||| || ||||| || |
Sbjct 506274 TTGGTATGAACGCCAAGCTGATGTGCCAGTACATCGAGTTTGTCGCTGACCGTCTGCTAG 506215
Query 45189 TCCAGTTAAAGTATC-CCAAGATGTACTATACTGAGAACCCATTCGAGTTTATGAACAAT 45247
| | ||| | ||||| |||| | | ||||| ||||| || ||| | ||
Sbjct 506214 T-TGCTCTCGGTAACTCCAAGGTGTATAACTCCACCAACCCCTTCGACTTCATGGAGAAC 506156
Query 45248 ATTTCGTTGGAGGGCAAAACTAAtttttttGAGAAACGCGTCGGCGAATACAAG 45301
|| || ||| ||||| || || ||||| ||||| || || ||| ||| ||
Sbjct 506155 ATCTCTCTGGCCGGCAAGACCAACTTTTTCGAGAAGCGAGTGTCCGACTACCAG 506102
>seq4
Length=3629463
Score = 84.2 bits (92), Expect = 2e-11
Identities = 120/169 (71%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 133188 ATGTCGAGATCGATTAGCGCTTTGACGAGATACTGGTTGACCACTTGAAACTCGCCGGCG 133247
||| | || | |||||| |||| | || ||||||| ||||| ||||||| || ||
Sbjct 424214 ATGCCCAGTTTGATTAGATCTTTCATCAGCCACTGGTTCACCACGAGAAACTCACCAGCC 424273
Query 133248 AGAACGCGTCTGAGATATACATTCGACGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGT 133307
| || || | || || | || |||||| ||||||||||| | ||||||| ||| ||
Sbjct 424274 TGGACCCGACGAAGGTAAATGTTGGACGTGTACGGTTCGAAACACTCGTTGTGGCCCAGA 424333
Query 133308 ATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCACCAACAAAGAGTTTC 133356
||||||| || | || || |||||| || || | | ||||||||
Sbjct 424334 ATCTGCGATGTGGAAGCTGTAGGCATGGGGGCAACAAGTAGAGAGTTTC 424382
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433830362988844
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |