Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12]
7 sequences; 20,547,992 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq6 123 3e-23
seq5 86.0 7e-12
>seq6
Length=4002965
Score = 123 bits (136), Expect = 3e-23
Identities = 165/227 (73%), Gaps = 2/227 (1%)
Strand=Plus/Minus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
||||||| | |||| || | ||| | ||| |||||| || || ||||| || |
Sbjct 1219246 CCTCCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAA 1219187
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
||||| || |||| || ||||||||||| ||||| || |||||||||||||| | ||
Sbjct 1219186 AGAGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGG 1219127
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 43135
| | |||||||||| ||| || |||| ||| | | | ||||| || |||||
Sbjct 1219126 ATTCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCAATGGTGTCAGAGGACTCCAC 1219068
Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCA 43182
|||| ||||| || ||||| || || ||||| |||||||||||||
Sbjct 1219067 CTCGAGGGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 1219021
Score = 116 bits (128), Expect = 4e-21
Identities = 158/218 (72%), Gaps = 2/218 (1%)
Strand=Plus/Minus
Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028
|||| || | ||| | ||| |||||| || || ||||| |||| || || || ||
Sbjct 1337568 CGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCGGCCG 1337509
Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088
|| || ||||||||||| ||||| || |||||||||||||| | || | | |||||||
Sbjct 1337508 TCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTG 1337449
Query 43089 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147
||| ||| || |||| ||| | | | |||||| || ||||| |||| |||||
Sbjct 1337448 TCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGAT 1337390
Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTT 43185
|| || || || || ||||| ||||| || |||||||
Sbjct 1337389 AGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATTT 1337352
>seq5
Length=4198534
Score = 86.0 bits (94), Expect = 7e-12
Identities = 142/197 (72%), Gaps = 10/197 (5%)
Strand=Plus/Minus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGA-GTCCGCTCGTCATCT-AGCTGCTTACCAGCG 43049
|||||| ||||| ||||| || | ||| || || | || || |||||||||||||||
Sbjct 2277400 CTCCTTCTGAATGTTGTAGTCGGAAAGAAGTTCGACCATCCTCGGAGCTGCTTACCAGCG 2277341
Query 43050 AATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG--TTTGA 43107
|| || |||||||||||||| | || | | |||||||||| ||| | || | ||| |
Sbjct 2277340 AAAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCC-TGAATCTTGGACTTTAA 2277282
Query 43108 GCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT-TTTGCCCGTTAGCGTC 43166
|||| | |||||| || || || |||| |||||| ||| || || || |||
Sbjct 2277281 TTGTCG--ATGGTGTCGGAAGACTCAACCTCGA--AGGATGGTCTTTTCCAGTCAGAGTC 2277226
Query 43167 TTTACAAAGATTTGCAT 43183
|| || || || |||||
Sbjct 2277225 TTGACGAAAATCTGCAT 2277209
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571817549965960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |