Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12] 7 sequences; 20,547,992 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq3 102 2e-16 seq6 96.9 7e-15 >seq3 Length=3366276 Score = 102 bits (112), Expect = 2e-16 Identities = 384/597 (64%), Gaps = 24/597 (4%) Strand=Plus/Plus Query 35150 GACGATAGAACTGGAACAGGAACTCTATCCATTTTTGGACCCC---AAATGAGGTTCTCT 35206 ||||| |||| || || || ||||| || | |||| |||| | | | ||| | Sbjct 1529770 GACGACCGAACCGGCACCGGGACTCTCTCTCTGTTTGCCCCCCCTCAGCTTCGATTCGAT 1529829 Query 35207 CT-TCGAGACGACACTATTCCAGTTCTCACTACCAAGAAAATTTTCTGGAGAGGAGTTGT 35265 || || | |||||| | |||| | ||||| |||||| | | |||| |||| ||| | Sbjct 1529830 CTGTCCA-ACGACATTCTTCCCCTGCTCACCACCAAGCGAGTCTTCTACCGAGGCGTTCT 1529888 Query 35266 GGAAGAACTCTCGTGGTTCATCAGGGGCAATACAGACGCCAAAGAATTGGCCAAGAAGAA 35325 ||| || || | |||||| | || || |||| |||| || || | |||| || Sbjct 1529889 GGAGGAGCTTTTGTGGTTTGTGGCTGGATGCACCGACGGCAAAAAACTGAGCGAGAAAAA 1529948 Query 35326 GATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGA 35385 || ||||||||| ||| ||||| || ||| || |||| | ||| | | | Sbjct 1529949 CATTCACATCTGGGACGGAAATGGATCTAAGGAGTTCCTGGAAAAGGCCGGGCTGGGCCA 1530008 Query 35386 TAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGA 35445 ||| ||||||||| ||||||| || || || ||||||||||| ||||| || || || Sbjct 1530009 CAGACGAGAGGGAGACCTGGGACCGGTCTATGGCTTCCAATGGCGCCATTTCGGAGCCGA 1530068 Query 35446 ATATGATACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATA--TA 35503 || | | ||| | ||||| ||||| | || | || || | | || | | Sbjct 1530069 GTACAAGAATTGTGACACGGATTACACTGGCCAAGGCGTGGACCAGCT--CAAACAGGTG 1530126 Query 35504 CTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCT 35563 || | || || ||| || || | || | | || ||| || | |||||||| || Sbjct 1530127 ATACACACTCTCAGAACCAACCCTCACGACCGTCGAATCATTCTGTCTGCATGGAACCCC 1530186 Query 35564 ATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGC- 35622 ||||| | ||||| |||||||| || |||||| | || ||||||||| | Sbjct 1530187 GCCGATCTCCCAAAGATGGCGCTTCCTCCCTGTCACATGTTTTGCCAGTTTTATGTGTCG 1530246 Query 35623 TA-----------ATGGAGAA---TTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTC 35668 || | ||| | ||||||| ||| ||||||||||| | || | Sbjct 1530247 TACAAAAACTCGGAACGAGGACGTCTGTCGTGTCAGCTGTATCAGCGATCATGTGACCTG 1530306 Query 35669 GGGTTGGGCGTGCCCTTCAATATTGCATCATACTCTCTTCTGACTCATCTGATGGCC 35725 || | || || |||||||| ||||| || ||| |||| || || | |||| ||| Sbjct 1530307 GGTCTTGGAGTCCCCTTCAACATTGCCTCCTACGCTCTGCTCACCCGAATGATTGCC 1530363 >seq6 Length=4002965 Score = 96.9 bits (106), Expect = 7e-15 Identities = 140/195 (72%), Gaps = 17/195 (9%) Strand=Plus/Minus Query 94407 CTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTCGGAAAGGCCAGGGCA 94466 ||| || | |||||||| | ||||||||| || |||| ||||||| ||| || ||||| Sbjct 3934162 CTCGTACTGCTCGTACAGCTGCTTAAACTCATCACCATAGACGTCGTCAAGACCGGGGCA 3934103 Query 94467 CTCGTGGGGGCACATCAGGGACCAATTCTTCCCAGCCTTC------ACTCTCTCCATGAA 94520 ||||| |||||||||||||| ||| | |||| ||| |||| ||||||||| Sbjct 3934102 CTCGTTGGGGCACATCAGGGTCCATT------CAGCGTTCTGCTCGACTCGCTCCATGAA 3934049 Query 94521 GAGATCAGATACCCAGATAGCTGGGAAAAGATCCCTCGTCCTCAAA--TCTTCATTACCG 94578 || || | | ||| | ||| |||| || | |||| ||| || ||||| || ||| Sbjct 3934048 CAGGTCGGGGATCCACAGAGCCAGGAACAGGT--CTCGGGCTCGAATCTCTTCCTTTCCG 3933991 Query 94579 GCATTCTTTCTGCAG 94593 ||||||| |||| Sbjct 3933990 TGGTTCTTTC-GCAG 3933977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989583911246685