Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12] 7 sequences; 20,547,992 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2 181 1e-40 seq6 141 1e-28 seq4 109 7e-19 >seq2 Length=3044971 Score = 181 bits (200), Expect = 1e-40 Identities = 388/574 (68%), Gaps = 8/574 (1%) Strand=Plus/Plus Query 33596 GTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCC 33655 ||||||||||||||||| || | ||||| || || ||||| || ||||| || || Sbjct 506405 GTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCAGGCATGAGACC 506464 Query 33656 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGC 33715 ||||| || ||||| || ||||| ||||| || ||||| |||||||| || || || || Sbjct 506465 TCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCGGAGAAGAAGATGCCCTCGACGGC 506524 Query 33716 AGCAAAGGCAATAAGTCTCTCTCCATAACCGG-CGCT--GTCATGTATCCACTTTTGAGC 33772 ||||||||||| |||| ||||||| | || | || ||| |||||||| | || Sbjct 506525 GGCAAAGGCAATGAGTCGCTCTCCAAAGGTGGACTCTTCGTCGGAGATCCACTTGAGGGC 506584 Query 33773 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt 33832 ||| |||||||| || || | || || || || || ||||| || || || ||| || Sbjct 506585 CCAGTCGGCCTTTTTCTTGATGCAGGGGATGGTCTCGATGGCGTTGAACAGGTAGGTTCG 506644 Query 33833 ttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 33892 || || || || | || || ||||||| || || | || || || ||||| Sbjct 506645 CTCTTTGGGGTCCTTGATGTATGTGTCGATCAGCAGCGAGTAGGTCTCGGAGTGGATGTT 506704 Query 33893 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACA 33952 || || ||||| || |||||||| || | ||||||| |||||| || | Sbjct 506705 CTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCCTCGGGGGCCTGCACCTCGCCGGA 506764 Query 33953 AAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATAC 34012 ||||| || | | || || || || || || || ||| ||||| || || | || Sbjct 506765 GAATCGCTCAACCAGGTTCTCGTTAACGATACCGTCGGAGGCAGCAAAGAATGCGAGAAC 506824 Query 34013 ATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGT---TTATTCCAATCATTGATATCTT 34068 || || || | || || | |||| ||| || | ||| ||| || || | Sbjct 506825 GTGGGAGATGAAGAACCGCTCATC-GTTGTTGAGTCTGTTCTCCCAGTCACCCATGTCCT 506883 Query 34069 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 34128 | | ||| | || || ||||||| || || ||||| ||||| || ||||| | || Sbjct 506884 TTCCAAGATCAATCTCCTCAGCTGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATCTGCC 506943 Query 34129 AGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 |||| || || || ||||| ||||| | ||||| Sbjct 506944 AGATTTCGTGGTACTGGATGGGGAAGAGCACAAA 506977 >seq6 Length=4002965 Score = 141 bits (156), Expect = 1e-28 Identities = 427/657 (65%), Gaps = 2/657 (0%) Strand=Plus/Minus Query 63234 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63293 || ||||||| | ||| || ||| | || ||||| | ||| || || || || ||| Sbjct 3934095 GGGCACATCAGGGTCCATTCAGCGTTCTGCTCGACTCGCTCCATGAACAGGTCGGGGATC 3934036 Query 63294 CAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63353 || ||||| | || || |||| | || | || || ||||| |||||| || Sbjct 3934035 CACAGAGCCAGGAACAGGTCTCGGGCTCGAATCTCTTCCTTTCCGTGGTTCTTTCGCAGC 3933976 Query 63354 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63413 ||| |||| | | ||||| ||||| || || | ||| || || | | ||||| Sbjct 3933975 TCGCAGAACTCGAAGATATCGTCGTGCCAGGGCTCAAGGTACATTGCAAAGGCACCAGGT 3933916 Query 63414 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63473 || ||||| ||||||||||| | ||||| |||||||| ||||| || | || ||| || Sbjct 3933915 CGCTTGTTGCCTCCCTGATCAACGTATCGGGCGGTGTTGTTATAGACACGCAGCATGGGC 3933856 Query 63474 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTA 63533 | |||||||| || | || || || || | || ||| ||| | || || || || Sbjct 3933855 ACGATACCGTTGGAGGTTCCGTTAGTTCCAGCAATGTAGGAGCCAGTAGCTCGGATGTTG 3933796 Query 63534 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTG 63593 || || ||||| || || || || || || || | || || ||| | || Sbjct 3933795 TGGATAGACAGACCGATACCGCCGGCAGACTTGGAAATCAGAGCACAGGTTTTGAGGGTA 3933736 Query 63594 TCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGG 63653 || |||||||| || ||| || || ||||||| | || ||||| ||||| || Sbjct 3933735 TCGTAGATGCCGTCGATGGAGTCGTCCTTCATGTTGACAAGGAAACACGACGACATCTGA 3933676 Query 63654 TGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA- 63712 | | | |||||| || || | | || || |||||||| || || | || | ||| Sbjct 3933675 GGCTGGGGAGTTCCGGCGTTGTAGAGAGTGGGGGAAGCGTGAGTGAAGTACTTCTGAGAC 3933616 Query 63713 AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGAC 63772 | ||| ||||| |||||||| || | | || | || || || || | ||| Sbjct 3933615 ATATAG-TTGTAGGTCTCAATGGCCCGGGCAATGTTGTCGCCGTGGATACCGACAGAGAC 3933557 Query 63773 ACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGA 63832 ||||| | ||| || || |||| || ||| ||| | | || || ||| | Sbjct 3933556 TCGCATGATCATCTGTTGGGGTCGCTCGGCAACAGCACCGTTGACTCGCAGCAGGTATGC 3933497 Query 63833 TTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 | |||| || || || ||||| |||||||| | |||||||| ||||| | ||| Sbjct 3933496 TCGCTCCAGGGTCTTGAAGCCAAAGTAGTTGTAGGTGAAGTCTCGGTCGTAGAGAAT 3933440 >seq4 Length=3629463 Score = 109 bits (120), Expect = 7e-19 Identities = 463/713 (65%), Gaps = 30/713 (4%) Strand=Plus/Plus Query 63186 CGTTCGAACTCGTCTCCCCAAACATTGTCCA-ATCTAGGACATTCATCCGGACACATCAA 63244 || ||||| || ||||||||||||| | ||| | || || | || | ||||| | | Sbjct 425066 CGGTCGAATTCCTCTCCCCAAACATCGGCCAGACCTGGGGCCTTTCTG-GGACAGAAAAG 425124 Query 63245 CGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 63304 ||||||| | || ||| || ||| |||||| || ||||| | ||| | || Sbjct 425125 AGACCACTTTTCGCCATTCTCGACTTTGCGCATAAACAGGTCAGGCACCCATAAGGCGTA 425184 Query 63305 AAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTA---AGATCGAGGAA 63361 || || || | | || || ||||||| || || ||||| |||| ||||| Sbjct 425185 GAAGAGGTCACGGGCTCGATTTTCCTCGGCACC---ATGGTTTTTGCGCAGATTCAGGAA 425241 Query 63362 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 63421 ||| ||| || | |||||| || ||||| || | || | |||| || |||||||| Sbjct 425242 ATCCAAAATGTCTGCATGCCAGGGCTCCAAATACACTGCAAACGCTCCTGGACGTTTGTT 425301 Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 |||||| || || | ||| | ||| ||||| || | ||||| | ||| |||| || || Sbjct 425302 TCCTCCTTGGTCCACGTACCGAGCAGTGTTGTTGAACACTCTGAGCATAGGAACGATTCC 425361 Query 63482 GTTTGATATACCATTGGTACCGGAGAT-ATAGCCTCCACTGGCACGAATATTACTAAT-T 63539 | ||| | || | | || | || | || |||| |||| | ||| || || | Sbjct 425362 GGAGGATCTTCCTTGAGACCCAGTAATGAGAG-CTCCCTTGGCTCTAATGTTGTGGATAT 425420 Query 63540 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT-AACGTGTCATA 63598 | || || || || || || |||| |||||| || || |||||| | |||||| || Sbjct 425421 GCAAG-CCGATACCTCCGGCGGTTTTGGAGATTTGGGCACA-CGTTTTGAGCGTGTCGTA 425478 Query 63599 GATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 63658 |||||| || ||| || | |||| | || |||||| || | |||| | Sbjct 425479 GATGCCGTCGATGGAGTCTGCTGCCATGGCCACCAGGAAACAGGACGAAAGTTGGCCCTG 425538 Query 63659 AGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG-TA 63717 | ||||| ||||| || || |||||||| || || || || ||||| || | | Sbjct 425539 GGGGGTTCCTGCATTGAACAAAGTAGGAGACGCATGTGTGAA----TTTTCTGAGCGACA 425594 Query 63718 GA---TTGTACGTCTCAATAGC--TGAGTCTAT-ATC-CCATTGATGAATTCCTACTGCG 63770 || | ||| || || | ||| ||| ||| |||| |||| || | || Sbjct 425595 GAGCCTGGTAGGTTTCGCGCACCTTGAAAATATCATCTCCATGGATG----CCCAGGGCC 425650 Query 63771 ACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAG 63830 || ||||| ||||| || ||||||| || || | || | | | |||| ||||| Sbjct 425651 ACTCGCATCAACATATGTTGAGGTCGCTCCACCACGTTTCCGCCAACTCTCAATAAGTAT 425710 Query 63831 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 63883 || || |||| || || || ||||| ||| ||| | | |||||| | ||| Sbjct 425711 GACTTCTCCAGGGTCTTGAATCCAAAGTAGGAGTAAGTCATGTCTCGGTAGTA 425763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817544890960