Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12] 7 sequences; 20,547,992 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2 190 3e-43 seq6 158 2e-33 seq4 93.3 6e-14 >seq2 Length=3044971 Score = 190 bits (210), Expect = 3e-43 Identities = 390/574 (68%), Gaps = 8/574 (1%) Strand=Plus/Plus Query 49974 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 50033 ||||||||||||||||| || || |||||||| || ||||| || ||||| || || Sbjct 506405 GTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCAGGCATGAGACC 506464 Query 50034 ACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGC 50093 ||||| || ||||| || ||||| || || || || || |||||||| || || || || Sbjct 506465 TCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCGGAGAAGAAGATGCCCTCGACGGC 506524 Query 50094 GGCAAAGGCAACAAGTCTCTCTCCATAACTGG-CGCT--GTCATGTATCCACTTTTGAGC 50150 ||||||||||| |||| ||||||| | ||| | || ||| |||||||| | || Sbjct 506525 GGCAAAGGCAATGAGTCGCTCTCCAAAGGTGGACTCTTCGTCGGAGATCCACTTGAGGGC 506584 Query 50151 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt 50210 ||| |||||||| || || | || || || || || ||||| || || || ||| || Sbjct 506585 CCAGTCGGCCTTTTTCTTGATGCAGGGGATGGTCTCGATGGCGTTGAACAGGTAGGTTCG 506644 Query 50211 ttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 50270 || || || || | || || ||||||| || || | || || || ||||| Sbjct 506645 CTCTTTGGGGTCCTTGATGTATGTGTCGATCAGCAGCGAGTAGGTCTCGGAGTGGATGTT 506704 Query 50271 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACA 50330 || || ||||| || |||||||| || | ||||||| |||||| || | Sbjct 506705 CTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCCTCGGGGGCCTGCACCTCGCCGGA 506764 Query 50331 AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 50390 ||||| ||| | | || || || || || ||||| ||| ||||| || || | || Sbjct 506765 GAATCGCTCAACCAGGTTCTCGTTAACGATACCGTCGGAGGCAGCAAAGAATGCGAGAAC 506824 Query 50391 ATG---TTTTATAAAATGTTTTTCGTTG-GGTGTTAGTTTATTCCAATCATTGATATCTT 50446 || | | || | | |||||| | || | || | ||| ||| || || | Sbjct 506825 GTGGGAGATGAAGAACCGCTCATCGTTGTTGAGTCTG-TTCTCCCAGTCACCCATGTCCT 506883 Query 50447 TAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 50506 | | ||| | || || ||||||| || || ||||| ||||| || ||||| | || Sbjct 506884 TTCCAAGATCAATCTCCTCAGCTGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATCTGCC 506943 Query 50507 AGATGTCATGATATTGGATTGGGAAAATAACAAA 50540 |||| || || || ||||| ||||| | ||||| Sbjct 506944 AGATTTCGTGGTACTGGATGGGGAAGAGCACAAA 506977 >seq6 Length=4002965 Score = 158 bits (174), Expect = 2e-33 Identities = 364/546 (67%), Gaps = 2/546 (0%) Strand=Plus/Minus Query 79864 AACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCAC 79923 ||||| || || | || ||||| | || || || |||| || ||||||| | ||| Sbjct 3934137 AACTCATCACCATAGACGTCGTCAAGACCGGGGCACTCGTTGGGGCACATCAGGGTCCAT 3934078 Query 79924 TCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGA 79983 || | | | || ||||| | ||| || || || || ||||| ||||| | || || Sbjct 3934077 TCAGCGTTCTGCTCGACTCGCTCCATGAACAGGTCGGGGATCCACAGAGCCAGGAACAGG 3934018 Query 79984 TCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATA 80043 |||| || || | ||| || ||||| |||||| || ||| |||| | | ||| Sbjct 3934017 TCTCGGGCTCGAATCTCTTCCTTTCCGTGGTTCTTTCGCAGCTCGCAGAACTCGAAGATA 3933958 Query 80044 TCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGA 80103 || ||||| || || | ||| || || | | || ||||| ||||| ||||||||| Sbjct 3933957 TCGTCGTGCCAGGGCTCAAGGTACATTGCAAAGGCACCAGGTCGCTTGTTGCCTCCCTGA 3933898 Query 80104 TCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTA 80163 || | ||||| |||||||| ||||| || | || ||| || | ||||| ||||| || Sbjct 3933897 TCAACGTATCGGGCGGTGTTGTTATAGACACGCAGCATGGGCACGATACCGTTGGAGGTT 3933838 Query 80164 CCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATT 80223 || || || || | || ||| ||| | || || || || || || ||||| || Sbjct 3933837 CCGTTAGTTCCAGCAATGTAGGAGCCAGTAGCTCGGATGTTGTGGATAGACAGACCGATA 3933778 Query 80224 CCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATG 80283 || || || || || || | || || ||| | ||||| |||||||| || ||| Sbjct 3933777 CCGCCGGCAGACTTGGAAATCAGAGCACAGGTTTTGAGGGTATCGTAGATGCCGTCGATG 3933718 Query 80284 CTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCA 80343 || || ||||||| | || ||||| ||||| || | | |||||| || Sbjct 3933717 GAGTCGTCCTTCATGTTGACAAGGAAACACGACGACATCTGAGGCTGGGGAGTTCCGGCG 3933658 Query 80344 TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA-GTAGATTGTACGTCTC 80402 || | | || || |||||||| || || | || | ||||| ||| ||||| ||||| Sbjct 3933657 TTGTAGAGAGTGGGGGAAGCGTGAGTGAAGTACTTCTGAGACATATAG-TTGTAGGTCTC 3933599 Query 80403 AATAGC 80408 ||| || Sbjct 3933598 AATGGC 3933593 >seq4 Length=3629463 Score = 93.3 bits (102), Expect = 6e-14 Identities = 341/522 (65%), Gaps = 14/522 (3%) Strand=Plus/Plus Query 79858 CGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGA-CATTCGTCAGGACACATCAA 79916 || ||||| || ||||||||||||||| | | || || | || | ||||| | | Sbjct 425066 CGGTCGAATTCCTCTCCCCAAACATCGGCCAGACCTGGGGCCTTTCTG-GGACAGAAAAG 425124 Query 79917 CGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 79976 ||||||| | | ||| || ||| |||||| || ||||| | ||| | || Sbjct 425125 AGACCACTTTTCGCCATTCTCGACTTTGCGCATAAACAGGTCAGGCACCCATAAGGCGTA 425184 Query 79977 AAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTA---AGATCGAGGAA 80033 || || || | || || || |||||| || || ||||| |||| ||||| Sbjct 425185 GAAGAGGTCACGGGCTCGATTTTCCTCGGCACC---ATGGTTTTTGCGCAGATTCAGGAA 425241 Query 80034 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTT 80093 ||| ||| || | |||||| || ||||| || | || | |||| || |||||||| Sbjct 425242 ATCCAAAATGTCTGCATGCCAGGGCTCCAAATACACTGCAAACGCTCCTGGACGTTTGTT 425301 Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| || || | ||| | ||| ||||| || | ||||| | ||| |||| || || Sbjct 425302 TCCTCCTTGGTCCACGTACCGAGCAGTGTTGTTGAACACTCTGAGCATAGGAACGATTCC 425361 Query 80154 ATTGGATGTACCATTGGTCCCGGAGAT-ATAGCTTCCACTGGCACGAATATTACTAAT-T 80211 |||| | || | | ||| | || | ||| ||| |||| | ||| || || | Sbjct 425362 GGAGGATCTTCCTTGAGACCCAGTAATGAGAGC-TCCCTTGGCTCTAATGTTGTGGATAT 425420 Query 80212 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT-AACGTATCATA 80270 | || || || || || || |||| |||||| || || |||||| | ||| || || Sbjct 425421 GCAAG-CCGATACCTCCGGCGGTTTTGGAGATTTGGGCACA-CGTTTTGAGCGTGTCGTA 425478 Query 80271 GATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 80330 |||||| || ||| || | |||| | || |||||| || | |||| | Sbjct 425479 GATGCCGTCGATGGAGTCTGCTGCCATGGCCACCAGGAAACAGGACGAAAGTTGGCCCTG 425538 Query 80331 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 80372 ||||| ||||| || || |||||||| || || || || Sbjct 425539 GGGGGTTCCTGCATTGAACAAAGTAGGAGACGCATGTGTGAA 425580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268737151480