Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12] 7 sequences; 20,547,992 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq6 129 1e-24 seq5 98.7 2e-15 >seq6 Length=4002965 Score = 129 bits (142), Expect = 1e-24 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || || ||||| || || |||||||| || |||| ||||| Sbjct 1337565 AGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCGGCCGTCC 1337506 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || || || || || || | ||| || || || || ||||| || || ||| Sbjct 1337505 TCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCC 1337446 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| | || || || || | ||| ||| || || ||||| || || |||||| Sbjct 1337445 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTC 1337386 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATTT 104561 ||||| ||||| || || ||||| |||||||||| Sbjct 1337385 TTACCGGTAAGGGTCTTGACAAAAATCTGCATTT 1337352 >seq5 Length=4198534 Score = 98.7 bits (108), Expect = 2e-15 Identities = 148/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG-ATAGAGTTCTACCGTCTTCTAG 104412 ||||| | || || |||| |||||| || ||||| | | |||||| ||| || || || Sbjct 2276751 AGATGGAGAGTGGACTCTT-CTGAATGTTTTAGTCCGGAAAGAGTTGGACCATCCTCGAG 2276693 Query 104413 TTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAAT 104472 || || ||||| ||||| || | ||| || || || || || | || || |||||||| Sbjct 2276692 CTGCTTACCAGCGAAAATCAGTCGCTGCTGGTCCGGGGGAATCC--TCCTTGTCCTGAAT 2276635 Query 104473 CTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACC 104532 ||| ||| ||| || | ||| ||| || || ||||| || || || ||||| || Sbjct 2276634 CTTGACTTGACAATTGTCGATGGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTTTCC 2276575 Query 104533 AGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || || || || || |||||||| Sbjct 2276574 AGTCAGAGTCTTGACGAAAATCTGCAT 2276548 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/200 (73%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGA-GTTCTACCGTCTTCT-AGTTGTTTTC 104420 || || || |||||||| || ||||| || ||| |||| ||| || || || || || | Sbjct 2277405 GTGGACTCCTTCTGAATGTTGTAGTCGGAAAGAAGTTCGACCATCCTCGGAGCTGCTTAC 2277346 Query 104421 CAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTT 104480 |||| ||||| || | ||| || || || || ||||| || || ||||||||||| | | Sbjct 2277345 CAGCGAAAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGAATCTTGGACT 2277286 Query 104481 TTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC-TTACCAGTAAGT 104539 ||| ||| || | ||| ||| || || ||||| | | || ||| || ||||| || Sbjct 2277285 TTA-ATTGTCGATGGTGTCGGAAGACTCAACCTCGAAGG--ATGGTCTTTTCCAGTCAGA 2277229 Query 104540 GTTTTTACAAATATCTGCAT 104559 || || || || |||||||| Sbjct 2277228 GTCTTGACGAAAATCTGCAT 2277209 Score = 89.7 bits (98), Expect = 1e-12 Identities = 118/161 (73%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| || | || || ||||| | || || || |||||||| || |||||| Sbjct 2277210 ATACCACCTCGGAGTCGGAGAACGAGATGGAGAGTGGACTCCTTCTGAATGTTGTAGTCA 2277151 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||||| || || || || || || ||||||||||| || | ||| || | || Sbjct 2277150 GA-AGAGTTCGGCCATCCTCGAGCTGCTTACCAGCAAAAATCAGTCGCTGCTGGTTCGG- 2277093 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTC 104490 || || ||||| || ||||||||||| | || ||||| || Sbjct 2277092 GGGATCCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTC 2277052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151398296733956