Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12]
7 sequences; 20,547,992 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq6 129 1e-24
seq5 98.7 2e-15
>seq6
Length=4002965
Score = 129 bits (142), Expect = 1e-24
Identities = 157/214 (73%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| || ||||| | || || || ||||| || || |||||||| || |||| |||||
Sbjct 1337565 AGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCGGCCGTCC 1337506
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| || || || || || || || || | ||| || || || || ||||| || || |||
Sbjct 1337505 TCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCC 1337446
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527
|| ||||| | || || || || | ||| ||| || || ||||| || || ||||||
Sbjct 1337445 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTC 1337386
Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATTT 104561
||||| ||||| || || ||||| ||||||||||
Sbjct 1337385 TTACCGGTAAGGGTCTTGACAAAAATCTGCATTT 1337352
>seq5
Length=4198534
Score = 98.7 bits (108), Expect = 2e-15
Identities = 148/207 (71%), Gaps = 4/207 (2%)
Strand=Plus/Minus
Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG-ATAGAGTTCTACCGTCTTCTAG 104412
||||| | || || |||| |||||| || ||||| | | |||||| ||| || || ||
Sbjct 2276751 AGATGGAGAGTGGACTCTT-CTGAATGTTTTAGTCCGGAAAGAGTTGGACCATCCTCGAG 2276693
Query 104413 TTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAAT 104472
|| || ||||| ||||| || | ||| || || || || || | || || ||||||||
Sbjct 2276692 CTGCTTACCAGCGAAAATCAGTCGCTGCTGGTCCGGGGGAATCC--TCCTTGTCCTGAAT 2276635
Query 104473 CTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACC 104532
||| ||| ||| || | ||| ||| || || ||||| || || || ||||| ||
Sbjct 2276634 CTTGACTTGACAATTGTCGATGGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTTTCC 2276575
Query 104533 AGTAAGTGTTTTTACAAATATCTGCAT 104559
||| || || || || || ||||||||
Sbjct 2276574 AGTCAGAGTCTTGACGAAAATCTGCAT 2276548
Score = 96.9 bits (106), Expect = 8e-15
Identities = 145/200 (73%), Gaps = 6/200 (3%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGA-GTTCTACCGTCTTCT-AGTTGTTTTC 104420
|| || || |||||||| || ||||| || ||| |||| ||| || || || || || |
Sbjct 2277405 GTGGACTCCTTCTGAATGTTGTAGTCGGAAAGAAGTTCGACCATCCTCGGAGCTGCTTAC 2277346
Query 104421 CAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTT 104480
|||| ||||| || | ||| || || || || ||||| || || ||||||||||| | |
Sbjct 2277345 CAGCGAAAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGAATCTTGGACT 2277286
Query 104481 TTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC-TTACCAGTAAGT 104539
||| ||| || | ||| ||| || || ||||| | | || ||| || ||||| ||
Sbjct 2277285 TTA-ATTGTCGATGGTGTCGGAAGACTCAACCTCGAAGG--ATGGTCTTTTCCAGTCAGA 2277229
Query 104540 GTTTTTACAAATATCTGCAT 104559
|| || || || ||||||||
Sbjct 2277228 GTCTTGACGAAAATCTGCAT 2277209
Score = 89.7 bits (98), Expect = 1e-12
Identities = 118/161 (73%), Gaps = 2/161 (1%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || |||| || | || || ||||| | || || || |||||||| || ||||||
Sbjct 2277210 ATACCACCTCGGAGTCGGAGAACGAGATGGAGAGTGGACTCCTTCTGAATGTTGTAGTCA 2277151
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| ||||||| || || || || || || ||||||||||| || | ||| || | ||
Sbjct 2277150 GA-AGAGTTCGGCCATCCTCGAGCTGCTTACCAGCAAAAATCAGTCGCTGCTGGTTCGG- 2277093
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTC 104490
|| || ||||| || ||||||||||| | || ||||| ||
Sbjct 2277092 GGGATCCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTC 2277052
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151398296733956
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |